jgi.p|Nanoce1779_2|12906, mRNA_1640 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|12906
Unique NamemRNA_1640
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length455
Alignment locationscaffold_1:1138784..1139238 +

Link to JBrowse

Properties
Property NameValue
TranscriptId12992
TrackFilteredModels2
ProteinId12906
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1138784..1139238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|12906gene_1640Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|12906mRNA_1640-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1640CDS_1640Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1640 ID=mRNA_1640|Name=jgi.p|Nanoce1779_2|12906|organism=Nannochloropsis oceanica|type=mRNA|length=455bp
AAAGTCCTGTGCGGGGGGCATACGTCGAAGAAAGATGGAGAGCGATGAGT
GGGTGAGGCATGAGTGAGGGCTAGCAGTTAGAGCGAGCAAACCGCCAGCT
TTCAGCAGCAACAAGAGGCGGAAATGGCAATCTTGCAAAATCTGCCTGCG
TGCTTCGTCCTTCTTGCTAGCACGGTAGTCGCAGGCGCACCAAAAACGTG
TGTTCTGGAAACTGAAAGAAGACGGCGGGTGCCTGAGTCGTCATCACGAT
CGCCCTGTTTGGCTATGGCAGTCTCGCCAAAACAGTGGCCGATTAGAGGC
TGTGTTCGCAACCCCTCAAAAAGCGATTCTTCTCTCCCTTTTCGACCACT
TCCTTCTTGAGGGGTCTGCAAACCCCTAATACATTGGTAGCTCTTTTTGA
AGGGTCCCATCTCAAACCCCTCAAAAAGCATCGAACACACATCGACAAAC
CCCTC
back to top

protein sequence of jgi.p|Nanoce1779_2|12906

>mRNA_1640-protein ID=mRNA_1640-protein|Name=jgi.p|Nanoce1779_2|12906|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
MAILQNLPACFVLLASTVVAGAPKTCVLETERRRRVPESSSRSPCLAMAV
SPKQWPIRGCVRNPSKSDSSLPFRPLPS*
back to top

mRNA from alignment at scaffold_1:1138784..1139238+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1640 ID=mRNA_1640|Name=jgi.p|Nanoce1779_2|12906|organism=Nannochloropsis oceanica|type=mRNA|length=455bp|location=Sequence derived from alignment at scaffold_1:1138784..1139238+ (Nannochloropsis oceanica)
AAAGTCCTGTGCGGGGGGCATACGTCGAAGAAAGATGGAGAGCGATGAGT
GGGTGAGGCATGAGTGAGGGCTAGCAGTTAGAGCGAGCAAACCGCCAGCT
TTCAGCAGCAACAAGAGGCGGAAATGGCAATCTTGCAAAATCTGCCTGCG
TGCTTCGTCCTTCTTGCTAGCACGGTAGTCGCAGGCGCACCAAAAACGTG
TGTTCTGGAAACTGAAAGAAGACGGCGGGTGCCTGAGTCGTCATCACGAT
CGCCCTGTTTGGCTATGGCAGTCTCGCCAAAACAGTGGCCGATTAGAGGC
TGTGTTCGCAACCCCTCAAAAAGCGATTCTTCTCTCCCTTTTCGACCACT
TCCTTCTTGAGGGGTCTGCAAACCCCTAATACATTGGTAGCTCTTTTTGA
AGGGTCCCATCTCAAACCCCTCAAAAAGCATCGAACACACATCGACAAAC
CCCTC
back to top

Coding sequence (CDS) from alignment at scaffold_1:1138784..1139238+

>mRNA_1640 ID=mRNA_1640|Name=jgi.p|Nanoce1779_2|12906|organism=Nannochloropsis oceanica|type=CDS|length=237bp|location=Sequence derived from alignment at scaffold_1:1138784..1139238+ (Nannochloropsis oceanica)
ATGGCAATCTTGCAAAATCTGCCTGCGTGCTTCGTCCTTCTTGCTAGCAC
GGTAGTCGCAGGCGCACCAAAAACGTGTGTTCTGGAAACTGAAAGAAGAC
GGCGGGTGCCTGAGTCGTCATCACGATCGCCCTGTTTGGCTATGGCAGTC
TCGCCAAAACAGTGGCCGATTAGAGGCTGTGTTCGCAACCCCTCAAAAAG
CGATTCTTCTCTCCCTTTTCGACCACTTCCTTCTTGA
back to top
Synonyms
Publications