jgi.p|Nanoce1779_2|622239, mRNA_1639 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622239
Unique Name	mRNA_1639
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	960
Alignment location	scaffold_1:1137097..1138747 -

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Properties


Property Name	Value
TranscriptId	622325
Track	FilteredModels2
ProteinId	622239

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1137097..1138747 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622239	gene_1639	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622239	mRNA_1639-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1639	CDS_1639	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1137097..1138747-
coding sequence from alignment at scaffold_1:1137097..1138747-

mRNA sequence

>mRNA_1639 ID=mRNA_1639|Name=jgi.p|Nanoce1779_2|622239|organism=Nannochloropsis oceanica|type=mRNA|length=960bp
ATGCCCATCCCTGCCGCCGAGGAGAAAAAAAACTTGGGCAACCAGGCTTT
CAAGGCCGGGGACTACAAGAAGGCTATCGAGCACTACGGCGAAGCCCTTA
AAATTGATCCATCCGCACACACCTACTGGTCGAATCGCAGTGCTTCATAT
GCGGGGTTGGGTGACTGGGAGAATGCAGCGAATGACGCGAGTGAATGCTT
GAAGGCCAATAAAAATTTTGTGAAGGGCTATTTCCGCCTTGCTCTGGCCC
AGAAGAACCTGCAGCGGTATGAGCAGGCGTTGGAGACGATCACACGGGGG
TTGCAAGTGGATTTTGGGAATAATGATCTGAAGTCGATGAGGAAGGAAGT
GGAGGATGGGGTGAGACTGCAAAAGGTGGCCAGTTACATCGACACAGCCA
AGCAGCAGTTTATGAATAAGGAGTACAGTGCATGCTTGAGCACCATTGAC
AGTGGGCTGAGGATCGACGCGGGCAACTCGTCCCTGGTGGACTTACAGAA
AAAGGTGCAGCCCATGTGGGAGAAAGAGGAGAGGACCCGGAAGGCGGGTT
TGAGCCCAGTGGAGAAGATGAAGGAGGAGGGGGATGCGTACTATAAGAGT
GCGAATTTCGAGGCGGCCATTCAGCAGTACACGAAAACGTTGAACAAGAT
TGATGATAAGAGCTCGGAAATCGCCCTCAAGGTATTCTCGAATCGCGCAG
CCTGCTACAAGCAGCTCTCCAACTTTGACGGGGTCATCTCCGATTGCACC
AGCGTCATGGAAGTCAAGCCCGATGATGTCAAATCCCTCCTGAGGAGGGC
GCAAGCTTTCGAGGCCGTGGAAAGGTACAAGATGGCACTGCAGGATGTGA
GGACGCTGTTGGCCTTGCCTATGGACGTGGTAGGCCCATCGAACACGTCG
ATCGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCCAAAAGTTGCG
AGAAGGGTAA

protein sequence of jgi.p|Nanoce1779_2|622239

>mRNA_1639-protein ID=mRNA_1639-protein|Name=jgi.p|Nanoce1779_2|622239|organism=Nannochloropsis oceanica|type=polypeptide|length=320bp
MPIPAAEEKKNLGNQAFKAGDYKKAIEHYGEALKIDPSAHTYWSNRSASY
AGLGDWENAANDASECLKANKNFVKGYFRLALAQKNLQRYEQALETITRG
LQVDFGNNDLKSMRKEVEDGVRLQKVASYIDTAKQQFMNKEYSACLSTID
SGLRIDAGNSSLVDLQKKVQPMWEKEERTRKAGLSPVEKMKEEGDAYYKS
ANFEAAIQQYTKTLNKIDDKSSEIALKVFSNRAACYKQLSNFDGVISDCT
SVMEVKPDDVKSLLRRAQAFEAVERYKMALQDVRTLLALPMDVVGPSNTS
IANGLQHRLNRVIQKLREG*

mRNA from alignment at scaffold_1:1137097..1138747-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1639 ID=mRNA_1639|Name=jgi.p|Nanoce1779_2|622239|organism=Nannochloropsis oceanica|type=mRNA|length=1651bp|location=Sequence derived from alignment at scaffold_1:1137097..1138747- (Nannochloropsis oceanica)
ATGCCCATCCCTGCCGCCGAGGAGAAAAAAAAGTAAGTAGAGTAGCAAAT
ACAAATATAACTTGGAGAAACGCGTTTGTGCGTGTAAGGAGAGTCTGCGG
ATCCCGTGCGTGCCGAGATCGTGGAGGCGCAGCAGCGGAGCCGATGTGAG
CAACCGCAATAAACTAGATAGACTTTGTTATGCAGGCGCCCATTTAACTG
TTATGCAGACCCCCACTTCTTCATGTATTATGGCTAACTGGCTCTATCGG
TAGTGAACGTACCTGGTGCTTAGCCTTCATGCACAAATTTACACGGACCG
AGGGCTACCAAACCAGCGCATGCCGTTTGTTTGTTGTCCATGCCGGGTGC
CCATATATTTACACATGAGCTCCTTGAAGTATGTACGACTTGTCTTTGTG
GATACAGCTTACCGCTTTCCCGTTATTATTGTCACCCCATCCTCCCTCGC
TCCTCTCCCTGCCTCCACCCCTCCCTCCTTCGCTTACTACACAGCTTGGG
CAACCAGGCTTTCAAGGCCGGGGACTACAAGAAGGCTATCGAGCACTACG
GCGAAGCCCTTAAAATTGATCCATCCGCACACACCTACTGGTCGAATCGC
AGTGCTTCATATGCGGGGTTGGGTGACTGGGAGAATGCAGCGAATGACGC
GAGTGAATGCTTGAAGGCCAATAAAAATTTTGTGAAGGGCTATTTCCGCC
TTGCTCTGGCCCAGAAGAACCTGCAGCGGTATGAGCAGGCGTTGGAGACG
ATCACACGGGGGTTGCAAGTGGATTTTGGGAATAATGATCTGAAGTCGAT
GAGGAAGGAAGTGGAGGATGGGGTGAGACTGCAAAAGGTGGCCAGTTACA
TCGACACAGCCAAGCAGCAGTTTATGAATAAGGAGTACAGTGCATGCTTG
AGCACCATTGACAGTGGGCTGAGGATCGACGCGGGCAACTCGTCCCTGGT
GGACTTACAGAAAAAGGTGCAGCCCATGTGGGAGAAAGAGGAGAGGACCC
GGAAGGCGGGTTTGAGCCCAGTGGAGAAGATGAAGGAGGAGGGGGATGCG
TACTATAAGAGTGCGAATTTCGAGGCGGCCATTCAGCAGTACACGAAAAC
GTTGAACAAGATTGATGATAAGAGTAAGAATAAGGGAGCGAGAGGAAGGG
GGGAGAGGGTGTTGGTGACGCTTTGTCACGAGGGGCAATGGGACATATCT
TCTGATTTCCTCGTTCCCTTCACAAAACAGGCTCGGAAATCGCCCTCAAG
GTATTCTCGAATCGCGCAGCCTGCTACAAGCAGCTCTCCAACTTTGACGG
GGTCATCTCCGATTGCACCAGCGTCATGGAAGTCAAGCCCGATGATGTCA
AATCCCTCCTGAGGAGGGCGCAAGCTTTCGAGGCCGTGGAAAGGTACAAG
ATGGCACTGCAGGATGTGAGGACGCTGTTGGCCTTGCCTATGGACGTGGT
AGGCCCATCGAACACGTCGGTAGGTGTTGAGAGAGGAAGGGGGATGGAGG
GAAAGGGGTGTCTACTCGTCTTGTTCATTATCTCGTCACGTTCGTGGTGC
TCACCATTTTGGCTTCCTCCACTTATTTCCACAATGCACAGATCGCCAAC
GGTCTGCAGCATCGCTTGAACCGCGTTATCCAAAAGTTGCGAGAAGGGTA
A

Coding sequence (CDS) from alignment at scaffold_1:1137097..1138747-

>mRNA_1639 ID=mRNA_1639|Name=jgi.p|Nanoce1779_2|622239|organism=Nannochloropsis oceanica|type=CDS|length=3840bp|location=Sequence derived from alignment at scaffold_1:1137097..1138747- (Nannochloropsis oceanica)
ATCGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCCAAAAGTTGCG
AGAAGGGTAAGCTCGGAAATCGCCCTCAAGGTATTCTCGAATCGCGCAGC
CTGCTACAAGCAGCTCTCCAACTTTGACGGGGTCATCTCCGATTGCACCA
GCGTCATGGAAGTCAAGCCCGATGATGTCAAATCCCTCCTGAGGAGGGCG
CAAGCTTTCGAGGCCGTGGAAAGGTACAAGATGGCACTGCAGGATGTGAG
GACGCTGTTGGCCTTGCCTATGGACGTGGTAGGCCCATCGAACACGTCGC
TTGGGCAACCAGGCTTTCAAGGCCGGGGACTACAAGAAGGCTATCGAGCA
CTACGGCGAAGCCCTTAAAATTGATCCATCCGCACACACCTACTGGTCGA
ATCGCAGTGCTTCATATGCGGGGTTGGGTGACTGGGAGAATGCAGCGAAT
GACGCGAGTGAATGCTTGAAGGCCAATAAAAATTTTGTGAAGGGCTATTT
CCGCCTTGCTCTGGCCCAGAAGAACCTGCAGCGGTATGAGCAGGCGTTGG
AGACGATCACACGGGGGTTGCAAGTGGATTTTGGGAATAATGATCTGAAG
TCGATGAGGAAGGAAGTGGAGGATGGGGTGAGACTGCAAAAGGTGGCCAG
TTACATCGACACAGCCAAGCAGCAGTTTATGAATAAGGAGTACAGTGCAT
GCTTGAGCACCATTGACAGTGGGCTGAGGATCGACGCGGGCAACTCGTCC
CTGGTGGACTTACAGAAAAAGGTGCAGCCCATGTGGGAGAAAGAGGAGAG
GACCCGGAAGGCGGGTTTGAGCCCAGTGGAGAAGATGAAGGAGGAGGGGG
ATGCGTACTATAAGAGTGCGAATTTCGAGGCGGCCATTCAGCAGTACACG
AAAACGTTGAACAAGATTGATGATAAGAATGCCCATCCCTGCCGCCGAGG
AGAAAAAAAAATCGCCAACGGTCTGCAGCATCGCTTGAACCGCGTTATCC
AAAAGTTGCGAGAAGGGTAAGCTCGGAAATCGCCCTCAAGGTATTCTCGA
ATCGCGCAGCCTGCTACAAGCAGCTCTCCAACTTTGACGGGGTCATCTCC
GATTGCACCAGCGTCATGGAAGTCAAGCCCGATGATGTCAAATCCCTCCT
GAGGAGGGCGCAAGCTTTCGAGGCCGTGGAAAGGTACAAGATGGCACTGC
AGGATGTGAGGACGCTGTTGGCCTTGCCTATGGACGTGGTAGGCCCATCG
AACACGTCGCTTGGGCAACCAGGCTTTCAAGGCCGGGGACTACAAGAAGG
CTATCGAGCACTACGGCGAAGCCCTTAAAATTGATCCATCCGCACACACC
TACTGGTCGAATCGCAGTGCTTCATATGCGGGGTTGGGTGACTGGGAGAA
TGCAGCGAATGACGCGAGTGAATGCTTGAAGGCCAATAAAAATTTTGTGA
AGGGCTATTTCCGCCTTGCTCTGGCCCAGAAGAACCTGCAGCGGTATGAG
CAGGCGTTGGAGACGATCACACGGGGGTTGCAAGTGGATTTTGGGAATAA
TGATCTGAAGTCGATGAGGAAGGAAGTGGAGGATGGGGTGAGACTGCAAA
AGGTGGCCAGTTACATCGACACAGCCAAGCAGCAGTTTATGAATAAGGAG
TACAGTGCATGCTTGAGCACCATTGACAGTGGGCTGAGGATCGACGCGGG
CAACTCGTCCCTGGTGGACTTACAGAAAAAGGTGCAGCCCATGTGGGAGA
AAGAGGAGAGGACCCGGAAGGCGGGTTTGAGCCCAGTGGAGAAGATGAAG
GAGGAGGGGGATGCGTACTATAAGAGTGCGAATTTCGAGGCGGCCATTCA
GCAGTACACGAAAACGTTGAACAAGATTGATGATAAGAATGCCCATCCCT
GCCGCCGAGGAGAAAAAAAAATCGCCAACGGTCTGCAGCATCGCTTGAAC
CGCGTTATCCAAAAGTTGCGAGAAGGGTAAGCTCGGAAATCGCCCTCAAG
GTATTCTCGAATCGCGCAGCCTGCTACAAGCAGCTCTCCAACTTTGACGG
GGTCATCTCCGATTGCACCAGCGTCATGGAAGTCAAGCCCGATGATGTCA
AATCCCTCCTGAGGAGGGCGCAAGCTTTCGAGGCCGTGGAAAGGTACAAG
ATGGCACTGCAGGATGTGAGGACGCTGTTGGCCTTGCCTATGGACGTGGT
AGGCCCATCGAACACGTCGCTTGGGCAACCAGGCTTTCAAGGCCGGGGAC
TACAAGAAGGCTATCGAGCACTACGGCGAAGCCCTTAAAATTGATCCATC
CGCACACACCTACTGGTCGAATCGCAGTGCTTCATATGCGGGGTTGGGTG
ACTGGGAGAATGCAGCGAATGACGCGAGTGAATGCTTGAAGGCCAATAAA
AATTTTGTGAAGGGCTATTTCCGCCTTGCTCTGGCCCAGAAGAACCTGCA
GCGGTATGAGCAGGCGTTGGAGACGATCACACGGGGGTTGCAAGTGGATT
TTGGGAATAATGATCTGAAGTCGATGAGGAAGGAAGTGGAGGATGGGGTG
AGACTGCAAAAGGTGGCCAGTTACATCGACACAGCCAAGCAGCAGTTTAT
GAATAAGGAGTACAGTGCATGCTTGAGCACCATTGACAGTGGGCTGAGGA
TCGACGCGGGCAACTCGTCCCTGGTGGACTTACAGAAAAAGGTGCAGCCC
ATGTGGGAGAAAGAGGAGAGGACCCGGAAGGCGGGTTTGAGCCCAGTGGA
GAAGATGAAGGAGGAGGGGGATGCGTACTATAAGAGTGCGAATTTCGAGG
CGGCCATTCAGCAGTACACGAAAACGTTGAACAAGATTGATGATAAGAAT
GCCCATCCCTGCCGCCGAGGAGAAAAAAAAATCGCCAACGGTCTGCAGCA
TCGCTTGAACCGCGTTATCCAAAAGTTGCGAGAAGGGTAAGCTCGGAAAT
CGCCCTCAAGGTATTCTCGAATCGCGCAGCCTGCTACAAGCAGCTCTCCA
ACTTTGACGGGGTCATCTCCGATTGCACCAGCGTCATGGAAGTCAAGCCC
GATGATGTCAAATCCCTCCTGAGGAGGGCGCAAGCTTTCGAGGCCGTGGA
AAGGTACAAGATGGCACTGCAGGATGTGAGGACGCTGTTGGCCTTGCCTA
TGGACGTGGTAGGCCCATCGAACACGTCGCTTGGGCAACCAGGCTTTCAA
GGCCGGGGACTACAAGAAGGCTATCGAGCACTACGGCGAAGCCCTTAAAA
TTGATCCATCCGCACACACCTACTGGTCGAATCGCAGTGCTTCATATGCG
GGGTTGGGTGACTGGGAGAATGCAGCGAATGACGCGAGTGAATGCTTGAA
GGCCAATAAAAATTTTGTGAAGGGCTATTTCCGCCTTGCTCTGGCCCAGA
AGAACCTGCAGCGGTATGAGCAGGCGTTGGAGACGATCACACGGGGGTTG
CAAGTGGATTTTGGGAATAATGATCTGAAGTCGATGAGGAAGGAAGTGGA
GGATGGGGTGAGACTGCAAAAGGTGGCCAGTTACATCGACACAGCCAAGC
AGCAGTTTATGAATAAGGAGTACAGTGCATGCTTGAGCACCATTGACAGT
GGGCTGAGGATCGACGCGGGCAACTCGTCCCTGGTGGACTTACAGAAAAA
GGTGCAGCCCATGTGGGAGAAAGAGGAGAGGACCCGGAAGGCGGGTTTGA
GCCCAGTGGAGAAGATGAAGGAGGAGGGGGATGCGTACTATAAGAGTGCG
AATTTCGAGGCGGCCATTCAGCAGTACACGAAAACGTTGAACAAGATTGA
TGATAAGAATGCCCATCCCTGCCGCCGAGGAGAAAAAAAA

Synonyms

Publications