jgi.p|Nanoce1779_2|572950, mRNA_1637 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572950
Unique Name	mRNA_1637
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1234
Alignment location	scaffold_1:1133700..1135157 +

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Properties


Property Name	Value
TranscriptId	573036
Track	FilteredModels2
ProteinId	572950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1133700..1135157 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572950	gene_1637	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572950	mRNA_1637-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1637	CDS_1637	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1133700..1135157+
coding sequence from alignment at scaffold_1:1133700..1135157+

mRNA sequence

>mRNA_1637 ID=mRNA_1637|Name=jgi.p|Nanoce1779_2|572950|organism=Nannochloropsis oceanica|type=mRNA|length=1234bp
AGCCACGGAGTACTGTTACCAAGCTTGGCTTTTGGGAGCGGCTCCGTCTT
TATCCTGCTCCCTGAATGACCCATTTACCTCGACGGATGATGATTGGAGA
GCTCCATAGTGGAAGACGAGCTCGGACCTCCGTCCTTGCCACTCGCATCG
TCCAGGCCGCCATTTTCATGCTACTTCCTTGCGTAGGCGCGTCCATGGGA
AAAGAAGAAGCTCGCATGTACGATCGAAACTTGCAGCATTTTTCACCGGA
AGGACGCATTTATCAGGTACAGTACGCAGAGCGCGCTGCCCGCCGAGGCA
GTCCTGTTGTTGCCTTGAGCAACGGCCGGGATGCGCTAGCGCTATGCGTG
GAACGACGCCGCGCCTCGGCATTAGAGGATGACTTTATGATTTCCCAGGA
GAAAGTAGGTGAGATTCAGGAGGGGGCTTATCTCGGGTTTGCGGGCTTGG
CGGCAGATGGACGACGGCTGTTGGATCGAACGAGGTTATTTGCGGAGAAT
TACCGGTTGAAGCACGCGGAGTTACCAGTTGTAAAAGACATGGCACTTTT
TGTGGGAGATTTGCAACATCACAATACCTTTGTTCGTGCCCACCGTCCCT
ACGGCGTGTCGTGCGTTTTGGTGGGCATGAGCAGCAACATCATCATTCCC
ACAATTAGCCCTTGCAAACGTGCTAGCGGTCCTTGTATATTTGCCACCGA
ACCCTCGGGGGCCGTGCAGGAATATCGGGCTGTCTGCGTGGGGGAGAACG
CGGAGACCATCACGATTCGTTTGGAGGCCCATGCGGCTGATTTACCCGGA
ATGAACGTGGGACAACTCGCGCGATTTGCCGCGCGCGTGTTGTGGGACGC
CCGTGCTGCTCGTGCTGAGGCTGCCGGTGATGGTTGGGAGAGAGAAGAAG
GGAAAGAGGGAGAGGGAAAGGTGGAGTTGGAGGTGTTGTTGTTGACGTGG
GAGGGAGTGGAGGAACGGAAAGAAGATGGCGGGAGGGGCGCACAGGGGAA
GGGTAAGGTGAGAACAAGGCGGCTGTTTGTGAAGAGCATACAAGACATTG
AGGCGCTCGGTAGGCTGTTGCATCTAAGGAAGAAAGTGGTGGAGGGAACG
CAGACAGAAGGAATGGAAGAGGGAGGGCGGACAAAGAAAGGGTTGTGAGG
GAGGTAGCAGGCAGTGTGCGAGAATAGGGTGAGAAATAATGCGGAGTCAT
TGGATAAAAGTATGTACAGGAACAGTGTTGGTGC

protein sequence of jgi.p|Nanoce1779_2|572950

>mRNA_1637-protein ID=mRNA_1637-protein|Name=jgi.p|Nanoce1779_2|572950|organism=Nannochloropsis oceanica|type=polypeptide|length=361bp
MTHLPRRMMIGELHSGRRARTSVLATRIVQAAIFMLLPCVGASMGKEEAR
MYDRNLQHFSPEGRIYQVQYAERAARRGSPVVALSNGRDALALCVERRRA
SALEDDFMISQEKVGEIQEGAYLGFAGLAADGRRLLDRTRLFAENYRLKH
AELPVVKDMALFVGDLQHHNTFVRAHRPYGVSCVLVGMSSNIIIPTISPC
KRASGPCIFATEPSGAVQEYRAVCVGENAETITIRLEAHAADLPGMNVGQ
LARFAARVLWDARAARAEAAGDGWEREEGKEGEGKVELEVLLLTWEGVEE
RKEDGGRGAQGKGKVRTRRLFVKSIQDIEALGRLLHLRKKVVEGTQTEGM
EEGGRTKKGL*

mRNA from alignment at scaffold_1:1133700..1135157+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1637 ID=mRNA_1637|Name=jgi.p|Nanoce1779_2|572950|organism=Nannochloropsis oceanica|type=mRNA|length=1458bp|location=Sequence derived from alignment at scaffold_1:1133700..1135157+ (Nannochloropsis oceanica)
AGCCACGGAGTACTGTTACCAAGCTTGGCTTTTGGGAGCGGCTCCGTCTT
TATCCTGCTCCCTGAATGACCCATTTACCTCGACGGATGATGATTGGAGA
GCTCCATAGTGGAAGACGAGCTCGGACCTCCGTCCTTGCCACTCGCATCG
TCCAGGCCGCCATTTTCATGCTACTTCCTTGCGTAGGCGCGTCCATGGGA
AAAGAAGAAGCTCGCATGTACGATCGAAACTTGCAGCATTTTTCACCGGA
AGGACGCATTTATCAGGTAAGAGTCGCAGTAGCCTCCTCTATGTCCTTCT
CCATGACCTCCTCCTCTCTTCAAATTTTTGTACCAGAAACCGTCATGCGC
CCGACAACATATCACGTTCTTTCCTTGAATCGCTTTGAAACATTACCCGC
TGCCCTTCCTGTAGGTACAGTACGCAGAGCGCGCTGCCCGCCGAGGCAGT
CCTGTTGTTGCCTTGAGCAACGGCCGGGATGCGCTAGCGCTATGCGTGGA
ACGACGCCGCGCCTCGGCATTAGAGGATGACTTTATGATTTCCCAGGAGA
AAGTAGGTGAGATTCAGGAGGGGGCTTATCTCGGGTTTGCGGGCTTGGCG
GCAGATGGACGACGGCTGTTGGATCGAACGAGGTTATTTGCGGAGAATTA
CCGGTTGAAGCACGCGGAGTTACCAGTTGTAAAAGACATGGCACTTTTTG
TGGGAGGTACGCAATGTGATGAGAGCCTGGGAGGTTGATTTTAAAAGGCA
TTTGACAGCTAATATGCTCCTGCTCTCAACAGATTTGCAACATCACAATA
CCTTTGTTCGTGCCCACCGTCCCTACGGCGTGTCGTGCGTTTTGGTGGGC
ATGAGCAGCAACATCATCATTCCCACAATTAGCCCTTGCAAACGTGCTAG
CGGTCCTTGTATATTTGCCACCGAACCCTCGGGGGCCGTGCAGGAATATC
GGGCTGTCTGCGTGGGGGAGAACGCGGAGACCATCACGATTCGTTTGGAG
GCCCATGCGGCTGATTTACCCGGAATGAACGTGGGACAACTCGCGCGATT
TGCCGCGCGCGTGTTGTGGGACGCCCGTGCTGCTCGTGCTGAGGCTGCCG
GTGATGGTTGGGAGAGAGAAGAAGGGAAAGAGGGAGAGGGAAAGGTGGAG
TTGGAGGTGTTGTTGTTGACGTGGGAGGGAGTGGAGGAACGGAAAGAAGA
TGGCGGGAGGGGCGCACAGGGGAAGGGTAAGGTGAGAACAAGGCGGCTGT
TTGTGAAGAGCATACAAGACATTGAGGCGCTCGGTAGGCTGTTGCATCTA
AGGAAGAAAGTGGTGGAGGGAACGCAGACAGAAGGAATGGAAGAGGGAGG
GCGGACAAAGAAAGGGTTGTGAGGGAGGTAGCAGGCAGTGTGCGAGAATA
GGGTGAGAAATAATGCGGAGTCATTGGATAAAAGTATGTACAGGAACAGT
GTTGGTGC

Coding sequence (CDS) from alignment at scaffold_1:1133700..1135157+

>mRNA_1637 ID=mRNA_1637|Name=jgi.p|Nanoce1779_2|572950|organism=Nannochloropsis oceanica|type=CDS|length=3249bp|location=Sequence derived from alignment at scaffold_1:1133700..1135157+ (Nannochloropsis oceanica)
ATGACCCATTTACCTCGACGGATGATGATTGGAGAGCTCCATAGTGGAAG
ACGAGCTCGGACCTCCGTCCTTGCCACTCGCATCGTCCAGGCCGCCATTT
TCATGCTACTTCCTTGCGTAGGCGCGTCCATGGGAAAAGAAGAAGCTCGC
ATGTACGATCGAAACTTGCAGCATTTTTCACCGGAAGGACGCATTTATCA
GGTACAGTACGCAGAGCGCGCTGCCCGCCGAGGCAGTCCTGTTGTTGCCT
TGAGCAACGGCCGGGATGCGCTAGCGCTATGCGTGGAACGACGCCGCGCC
TCGGCATTAGAGGATGACTTTATGATTTCCCAGGAGAAAGTAGGTGAGAT
TCAGGAGGGGGCTTATCTCGGGTTTGCGGGCTTGGCGGCAGATGGACGAC
GGCTGTTGGATCGAACGAGGTTATTTGCGGAGAATTACCGGTTGAAGCAC
GCGGAGTTACCAGTTGTAAAAGACATGGCACTTTTTGTGGGAGATTTGCA
ACATCACAATACCTTTGTTCGTGCCCACCGTCCCTACGGCGTGTCGTGCG
TTTTGGTGGGCATGAGCAGCAACATCATCATTCCCACAATTAGCCCTTGC
AAACGTGCTAGCGGTCCTTGTATATTTGCCACCGAACCCTCGGGGGCCGT
GCAGGAATATCGGGCTGTCTGCGTGGGGGAGAACGCGGAGACCATCACGA
TTCGTTTGGAGGCCCATGCGGCTGATTTACCCGGAATGAACGTGGGACAA
CTCGCGCGATTTGCCGCGCGCGTGTTGTGGGACGCCCGTGCTGCTCGTGC
TGAGGCTGCCGGTGATGGTTGGGAGAGAGAAGAAGGGAAAGAGGGAGAGG
GAAAGGTGGAGTTGGAGGTGTTGTTGTTGACGTGGGAGGGAGTGGAGGAA
CGGAAAGAAGATGGCGGGAGGGGCGCACAGGGGAAGGGTAAGGTGAGAAC
AAGGCGGCTGTTTGTGAAGAGCATACAAGACATTGAGGCGCTCGGTAGGC
TGTTGCATCTAAGGAAGAAAGTGGTGGAGGGAACGCAGACAGAAGGAATG
GAAGAGGGAGGGCGGACAAAGAAAGGGTTGTGAATGACCCATTTACCTCG
ACGGATGATGATTGGAGAGCTCCATAGTGGAAGACGAGCTCGGACCTCCG
TCCTTGCCACTCGCATCGTCCAGGCCGCCATTTTCATGCTACTTCCTTGC
GTAGGCGCGTCCATGGGAAAAGAAGAAGCTCGCATGTACGATCGAAACTT
GCAGCATTTTTCACCGGAAGGACGCATTTATCAGGTACAGTACGCAGAGC
GCGCTGCCCGCCGAGGCAGTCCTGTTGTTGCCTTGAGCAACGGCCGGGAT
GCGCTAGCGCTATGCGTGGAACGACGCCGCGCCTCGGCATTAGAGGATGA
CTTTATGATTTCCCAGGAGAAAGTAGGTGAGATTCAGGAGGGGGCTTATC
TCGGGTTTGCGGGCTTGGCGGCAGATGGACGACGGCTGTTGGATCGAACG
AGGTTATTTGCGGAGAATTACCGGTTGAAGCACGCGGAGTTACCAGTTGT
AAAAGACATGGCACTTTTTGTGGGAGATTTGCAACATCACAATACCTTTG
TTCGTGCCCACCGTCCCTACGGCGTGTCGTGCGTTTTGGTGGGCATGAGC
AGCAACATCATCATTCCCACAATTAGCCCTTGCAAACGTGCTAGCGGTCC
TTGTATATTTGCCACCGAACCCTCGGGGGCCGTGCAGGAATATCGGGCTG
TCTGCGTGGGGGAGAACGCGGAGACCATCACGATTCGTTTGGAGGCCCAT
GCGGCTGATTTACCCGGAATGAACGTGGGACAACTCGCGCGATTTGCCGC
GCGCGTGTTGTGGGACGCCCGTGCTGCTCGTGCTGAGGCTGCCGGTGATG
GTTGGGAGAGAGAAGAAGGGAAAGAGGGAGAGGGAAAGGTGGAGTTGGAG
GTGTTGTTGTTGACGTGGGAGGGAGTGGAGGAACGGAAAGAAGATGGCGG
GAGGGGCGCACAGGGGAAGGGTAAGGTGAGAACAAGGCGGCTGTTTGTGA
AGAGCATACAAGACATTGAGGCGCTCGGTAGGCTGTTGCATCTAAGGAAG
AAAGTGGTGGAGGGAACGCAGACAGAAGGAATGGAAGAGGGAGGGCGGAC
AAAGAAAGGGTTGTGAATGACCCATTTACCTCGACGGATGATGATTGGAG
AGCTCCATAGTGGAAGACGAGCTCGGACCTCCGTCCTTGCCACTCGCATC
GTCCAGGCCGCCATTTTCATGCTACTTCCTTGCGTAGGCGCGTCCATGGG
AAAAGAAGAAGCTCGCATGTACGATCGAAACTTGCAGCATTTTTCACCGG
AAGGACGCATTTATCAGGTACAGTACGCAGAGCGCGCTGCCCGCCGAGGC
AGTCCTGTTGTTGCCTTGAGCAACGGCCGGGATGCGCTAGCGCTATGCGT
GGAACGACGCCGCGCCTCGGCATTAGAGGATGACTTTATGATTTCCCAGG
AGAAAGTAGGTGAGATTCAGGAGGGGGCTTATCTCGGGTTTGCGGGCTTG
GCGGCAGATGGACGACGGCTGTTGGATCGAACGAGGTTATTTGCGGAGAA
TTACCGGTTGAAGCACGCGGAGTTACCAGTTGTAAAAGACATGGCACTTT
TTGTGGGAGATTTGCAACATCACAATACCTTTGTTCGTGCCCACCGTCCC
TACGGCGTGTCGTGCGTTTTGGTGGGCATGAGCAGCAACATCATCATTCC
CACAATTAGCCCTTGCAAACGTGCTAGCGGTCCTTGTATATTTGCCACCG
AACCCTCGGGGGCCGTGCAGGAATATCGGGCTGTCTGCGTGGGGGAGAAC
GCGGAGACCATCACGATTCGTTTGGAGGCCCATGCGGCTGATTTACCCGG
AATGAACGTGGGACAACTCGCGCGATTTGCCGCGCGCGTGTTGTGGGACG
CCCGTGCTGCTCGTGCTGAGGCTGCCGGTGATGGTTGGGAGAGAGAAGAA
GGGAAAGAGGGAGAGGGAAAGGTGGAGTTGGAGGTGTTGTTGTTGACGTG
GGAGGGAGTGGAGGAACGGAAAGAAGATGGCGGGAGGGGCGCACAGGGGA
AGGGTAAGGTGAGAACAAGGCGGCTGTTTGTGAAGAGCATACAAGACATT
GAGGCGCTCGGTAGGCTGTTGCATCTAAGGAAGAAAGTGGTGGAGGGAAC
GCAGACAGAAGGAATGGAAGAGGGAGGGCGGACAAAGAAAGGGTTGTGA

Synonyms

Publications