jgi.p|Nanoce1779_2|635831, mRNA_1636 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|635831
Unique Name	mRNA_1636
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1968
Alignment location	scaffold_1:1131215..1133182 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	635917
Track	FilteredModels2
ProteinId	635831

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1131215..1133182 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635831	gene_1636	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|635831	mRNA_1636-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1636	CDS_1636	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1131215..1133182+
coding sequence from alignment at scaffold_1:1131215..1133182+

mRNA sequence

>mRNA_1636 ID=mRNA_1636|Name=jgi.p|Nanoce1779_2|635831|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp
ATGTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGG
GGAACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGC
GTCTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCG
GCCTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGG
GAAGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTA
TGGATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCT
GGGTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGA
GACTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAA
TCGACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATC
AAGGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCT
GCTCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGC
TGATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACG
GGCAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCG
GCAAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGG
GGGCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGAC
CGGTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGA
GCCCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGG
GTGAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAAC
GACCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGC
TGACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCC
CCGATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACG
GGGGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAA
TCCCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGG
TTGACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGC
CAAAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGG
AGCGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACG
CGCGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATT
GTGGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAA
GATTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGG
AGGGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTG
GCAGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTAT
TCTGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGG
AGGATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAG
TTTGGATACGACACTATTGTTATGGGGGCGTCGTTTCGCAACAAGGGGGA
GATTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGT
TGGATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCG
AGTAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAA
GGCGTTCCGTCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGG
CGGAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATG
ATTGCCAAGAAGCTCTGA

protein sequence of jgi.p|Nanoce1779_2|635831

>mRNA_1636-protein ID=mRNA_1636-protein|Name=jgi.p|Nanoce1779_2|635831|organism=Nannochloropsis oceanica|type=polypeptide|length=656bp
MSAPKKTKHVDQFTALGELTTLVCDTGDVEAIKRLKPTDATTNPSLIYKA
ASQPQYLPLVQDAVAYGKALSASKSDSERLAATMDRLAVNFGAEITKIVP
GYVSTEVDARLSYDTGETLKRGRRIIEMYKELGIDKSRILIKIASTWEGI
KAAEVLEKEGVATNLTLLFSLAQAAAAAEAGATLISPFVGRILDWWKKET
GKGYADPEEDPGVQSVRQIYGYYKKFGYDTIVMGASFRNKGEITALAGCD
RLTISPGLLDELKECHEPLPRVLDPRSGSSFYEGETIPVDEKAFRLALNN
DPMATAKLAEGIRGFAADIEKLEAMIAKMLVPPPDQLSQLAAFTTIVCDT
GDVETIGRLKPTDATTNPSLIFKAASLPQYQPLVDSAIAAAKAVADAGMS
QKERLDLILDRLAVNFGAEITKIVPGYVSTEVDARLSYDTEQTLARAKRI
VGMYKDLGIDKSRILIKIASTWEGIKAAEVLEKEGVKTNLTLLFSLAQAV
AAAEAGATLISPFVGRILDWWKKETGKRYADLEEDPGVQSVRQIYGYYKK
FGYDTIVMGASFRNKGEITALAGCDRLTISPGLLDELKACCDPLPRMLEP
SKAAAVYGGPKLRVDEKAFRLMMNGDAMATDKLAEGIRGFAADIEKLEAM
IAKKL*

mRNA from alignment at scaffold_1:1131215..1133182+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1636 ID=mRNA_1636|Name=jgi.p|Nanoce1779_2|635831|organism=Nannochloropsis oceanica|type=mRNA|length=1968bp|location=Sequence derived from alignment at scaffold_1:1131215..1133182+ (Nannochloropsis oceanica)
ATGTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGG
GGAACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGC
GTCTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCG
GCCTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGG
GAAGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTA
TGGATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCT
GGGTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGA
GACTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAA
TCGACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATC
AAGGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCT
GCTCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGC
TGATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACG
GGCAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCG
GCAAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGG
GGGCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGAC
CGGTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGA
GCCCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGG
GTGAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAAC
GACCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGC
TGACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCC
CCGATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACG
GGGGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAA
TCCCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGG
TTGACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGC
CAAAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGG
AGCGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACG
CGCGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATT
GTGGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAA
GATTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGG
AGGGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTG
GCAGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTAT
TCTGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGG
AGGATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAG
TTTGGATACGACACTATTGTTATGGGGGCGTCGTTTCGCAACAAGGGGGA
GATTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGT
TGGATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCG
AGTAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAA
GGCGTTCCGTCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGG
CGGAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATG
ATTGCCAAGAAGCTCTGA

Coding sequence (CDS) from alignment at scaffold_1:1131215..1133182+

>mRNA_1636 ID=mRNA_1636|Name=jgi.p|Nanoce1779_2|635831|organism=Nannochloropsis oceanica|type=CDS|length=1968bp|location=Sequence derived from alignment at scaffold_1:1131215..1133182+ (Nannochloropsis oceanica)
ATGTCGGCGCCCAAGAAAACTAAGCACGTGGACCAGTTCACGGCTCTCGG
GGAACTCACCACCTTGGTGTGTGACACGGGCGACGTCGAGGCCATCAAGC
GTCTCAAGCCCACGGATGCCACCACCAATCCCTCCCTCATCTACAAAGCG
GCCTCGCAACCCCAATACCTGCCTCTCGTCCAAGACGCGGTCGCGTACGG
GAAGGCCCTCTCTGCCTCCAAGTCCGATTCGGAGCGTCTGGCGGCGACTA
TGGATCGATTGGCGGTGAATTTTGGGGCAGAAATTACGAAGATCGTTCCT
GGGTATGTGAGCACTGAGGTGGACGCGCGGTTGAGCTACGACACGGGCGA
GACTTTGAAGAGGGGTCGACGCATTATTGAAATGTATAAAGAACTTGGAA
TCGACAAAAGCCGGATTCTGATTAAGATTGCCTCGACCTGGGAGGGGATC
AAGGCGGCCGAGGTGCTGGAGAAGGAGGGCGTAGCCACAAACCTTACTCT
GCTCTTTAGTCTCGCGCAAGCCGCTGCGGCGGCAGAAGCGGGTGCAACGC
TGATTTCACCGTTTGTGGGGCGTATTCTGGATTGGTGGAAAAAGGAAACG
GGCAAGGGGTACGCGGATCCGGAGGAGGATCCGGGCGTGCAGTCTGTGCG
GCAAATTTATGGGTATTATAAGAAGTTTGGATACGACACTATTGTAATGG
GGGCGTCGTTTCGCAACAAGGGGGAGATTACGGCGTTGGCAGGGTGTGAC
CGGTTGACGATCTCTCCGGGCCTGCTCGACGAGCTCAAGGAGTGCCATGA
GCCCCTCCCTCGTGTTTTGGACCCGAGGAGCGGCTCTTCCTTTTATGAGG
GTGAGACGATCCCTGTAGACGAAAAGGCCTTCCGTCTAGCCCTGAATAAC
GACCCCATGGCCACTGCCAAGCTTGCCGAAGGCATTAGGGGATTTGCCGC
TGACATTGAAAAACTCGAAGCAATGATTGCCAAGATGCTAGTCCCGCCCC
CCGATCAGCTCAGTCAACTCGCGGCCTTCACCACCATAGTCTGTGATACG
GGGGACGTGGAGACCATCGGCCGACTTAAACCCACAGATGCCACCACCAA
TCCCTCCCTCATCTTCAAAGCGGCCTCCCTCCCTCAATATCAACCCCTGG
TTGACTCGGCGATCGCTGCCGCCAAGGCCGTGGCGGACGCGGGGATGAGC
CAAAAGGAGCGGCTTGATTTGATTCTAGACCGTCTAGCCGTAAATTTTGG
AGCGGAAATCACCAAGATCGTTCCTGGGTATGTGAGTACCGAGGTGGACG
CGCGGTTGAGCTACGACACTGAGCAGACCTTGGCGAGGGCTAAGAGGATT
GTGGGGATGTACAAAGACTTGGGCATCGACAAAAGCCGGATTCTGATTAA
GATTGCTTCGACCTGGGAGGGGATCAAGGCGGCCGAGGTGCTGGAGAAGG
AGGGGGTGAAGACAAATTTGACCCTCTTGTTCTCCTTGGCCCAGGCAGTG
GCAGCGGCAGAAGCGGGTGCAACGCTGATCTCACCGTTTGTGGGGCGTAT
TCTGGATTGGTGGAAAAAGGAAACGGGCAAGAGGTACGCGGATCTGGAGG
AGGATCCGGGCGTGCAGTCTGTGCGGCAAATTTATGGGTATTATAAGAAG
TTTGGATACGACACTATTGTTATGGGGGCGTCGTTTCGCAACAAGGGGGA
GATTACGGCGTTGGCAGGGTGTGACCGGTTGACGATCTCTCCGGGGCTGT
TGGATGAGTTAAAGGCCTGTTGTGATCCGTTACCGCGAATGTTAGAGCCG
AGTAAGGCTGCGGCAGTGTATGGCGGGCCGAAGCTGCGGGTGGATGAAAA
GGCGTTCCGTCTCATGATGAATGGGGATGCCATGGCCACGGATAAGTTGG
CGGAGGGGATTAGGGGCTTTGCAGCGGATATTGAGAAGTTGGAGGCAATG
ATTGCCAAGAAGCTCTGA

Synonyms

Publications