jgi.p|Nanoce1779_2|572943, mRNA_1635 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572943
Unique NamemRNA_1635
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length853
Alignment locationscaffold_1:1128202..1130208 -

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Properties
Property NameValue
TranscriptId573029
TrackFilteredModels2
ProteinId572943
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1128202..1130208 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572943gene_1635Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572943mRNA_1635-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1635CDS_1635Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1635 ID=mRNA_1635|Name=jgi.p|Nanoce1779_2|572943|organism=Nannochloropsis oceanica|type=mRNA|length=853bp
ACAGCCTGCTGCTTTCTAGACAGTCGGTTGCTTGAGACGATGGCAGATAA
GAAGAACAACCCCATGCGGGAGCTTGTGGTGGAGAAGCTGATTCTCAACT
GCTGTGTGGGAGAGTCGGGCGATCGCCTGACGCGCGCCGCCAAGGTGTTG
GAGCAGCTGTCGGGGCAAACCCCCGTCTACTCGAAGGCCCGTTACACCGT
CCGCTCCTTCGGCATCCGCCGTAACGAGAAGATCTCCGTGCACGTGACCC
TGCGAGGGGATAAGGCCAACGAAATCCTGGACCGTGGCTTAAAGGTGAAG
GAGTATGAGTTGAAGAGGAAAAACTTCTCGGCCGGCGGAAACTTTGGCTT
CGGCATTACTGAGCACATCGATTTGGGGCTGAAATACGACCCGTCTACCG
GCATCTACGGTATGGATTTCTACGTCGTGTTGGGCCGCAAGGGTTTCCGT
GTAGGGCGCAGGAAGCTTAAGGTGGGGCGTGTAGGAGCTCCTCACCGAGT
GACGCAGAAGGATGCCATCGACTGGTTCCAGCAGAAGTTTGAGGGCATCG
TGTTGGGATAAGTGAAAGGCAGTTCTGTTAACACGTGAGATGAACCCGCC
TTGGCCAAGAGAGGGAGGGAGAGAGCATCTCCTTAAAAGAAGGGGGTGAA
GTATAGGCATGGAGGCGAGAGATACTATCTTCTGGCGAAGAGGGCAGCAA
TTTTAGACACCTGGGAGATGAGGAGCGGGAGGAGTTATTGTCCTGTCTAT
CTTCTAGGCTCGAGCAGTGGGGGAGAAGAGAGAGAGAGTGGAGAGCAAGG
TACGAGTAGAAGAACAGAAAAAACAACAAGAAGAAGATCATCTCCATCAT
TAA
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protein sequence of jgi.p|Nanoce1779_2|572943

>mRNA_1635-protein ID=mRNA_1635-protein|Name=jgi.p|Nanoce1779_2|572943|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MADKKNNPMRELVVEKLILNCCVGESGDRLTRAAKVLEQLSGQTPVYSKA
RYTVRSFGIRRNEKISVHVTLRGDKANEILDRGLKVKEYELKRKNFSAGG
NFGFGITEHIDLGLKYDPSTGIYGMDFYVVLGRKGFRVGRRKLKVGRVGA
PHRVTQKDAIDWFQQKFEGIVLG*
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mRNA from alignment at scaffold_1:1128202..1130208-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1635 ID=mRNA_1635|Name=jgi.p|Nanoce1779_2|572943|organism=Nannochloropsis oceanica|type=mRNA|length=2007bp|location=Sequence derived from alignment at scaffold_1:1128202..1130208- (Nannochloropsis oceanica)
ACAGCCTGCTGCTTTCTAGACAGTCGGTTGCTTGAGACGATGGCAGATAA
GAAGAACAACCCCATGCGGGAGCTTGTGGTAAGTAGGGTGGACTGGGTGG
TGGGAATATGTGGATGGAGGAGGATAGTAGGCAGTCAGCAGGAGGGCAGC
GGAAAGCGCGGCAAAGAAGCAATGCGGTGGCTTTTGGAGGCCAGTTATGC
TGAGCGAAAAGATAGCAATTGCGTGAAGTTGCGAGGCTTCCACCTCTGGT
GTCTGATTTGGTGGCGAAGAGGGTATAGTGCGCGTGCGAACGACCTGGGA
TGAGAGGACCTTTTCCCTATCCTTTCATTTCGAACCCACCATGAGCTCCA
CCACGAGCGGTGCCCTTGCAAGATCCACATCAAGTGGAAGCCGCATTGGA
GCAAGAAGAGAAACGTCAAGGGCGATGATGTAAAGTCGGACGTGTTGGAC
TTAACCCGATATCGAAACCGCCATTGCAGCCCCCACCACCATCGCGACGG
CAACGCGGCTGGAGGTCAGCATTCAGGAACCAGAATCATGTGCGCGTCGG
ATGAATCTTATCATTATGAATGGCCATGTCAATTAGCTCGGCTGGGGGCA
TCGCTGCGCTAGGCGGAGGAGAGGGTCGATTTTCGGGTGTTTGATGAGAG
AACGTGGCCAAGCCCACAATCAATTACTTACCTCTTCCTCCCTCCTTCCC
TCTCCCCCTTTCCCCCTCCCTTTCCTTCTAGGTGGAGAAGCTGATTCTCA
ACTGCTGTGTGGGAGAGTCGGGCGATCGCCTGACGCGCGCCGCCAAGGTG
TTGGAGCAGCTGTCGGGGCAAACCCCCGTCTACTCGAAGGCCCGTTACAC
CGTCCGCTCCTTCGGCATCCGCCGTAACGAGAAGATCTCCGTGCACGTGA
CCCTGCGAGGGGATAAGGCCAACGAAATCCTGGACCGTGGCTTAAAGGTG
AAGGAGTATGAGTTGAAGAGGAAAAACTTCTCGGCCGGCGGAAACTTTGG
TAAGCCGCAGCAGCAGTTTCTTCGGCGGGCATTGTACCGTGGCGCTTGTG
TGTGTGATTAGTGTTTGTCGTACTTGTTAGTGTGGGCATATATCATTTGT
CGTATGTGTGTCTGTGTGTGGTCGGTATTGGCGAGGAAGAAACAAATGGG
GCTTTATCTCCTTCTGTTCCTGTTGGGGTGCGTGAGAGAGAACGATTTGT
CTTTCGGGTAAATAGGTGGCGCAAATGTGGGATACAAATTAATGTCGAGC
ACAAAGGATACGATTTCGGACTGGCTTTACCTCTATGAGCTTATCTTTTT
TCCCCTCCTGCCCTTTCCTCCATCCTTCCAGGCTTCGGCATTACTGAGCA
CATCGATTTGGGGCTGAAATACGACCCGTCTACCGGCATCTACGGTATGG
ATTTCTACGTCGTGTTGGGCCGCAAGGGTTTCCGTGTAGGGCGCAGGAAG
CTTAAGGTGGGGCGTGTAGGAGCTCCTCACCGAGTGACGCAGAAGGATGC
CATCGACTGGTTCCAGCAGAAGTTTGAGGGCATCGGTACGTGCTGCCCCC
TCCCCTCCCTCTCTCCCTCTTTTCCTTCCCTTCCTCCCCCTTTCTGTCCC
TCCTTCCTTTTCATTATCTCTGTCATTTTCACAACCACTGAACTCATGAT
TATGTCTTTCCCTTGCTCGTTTCTTCCCTCCCCCCTTTCCTCTCTCTACT
ACAGTGTTGGGATAAGTGAAAGGCAGTTCTGTTAACACGTGAGATGAACC
CGCCTTGGCCAAGAGAGGGAGGGAGAGAGCATCTCCTTAAAAGAAGGGGG
TGAAGTATAGGCATGGAGGCGAGAGATACTATCTTCTGGCGAAGAGGGCA
GCAATTTTAGACACCTGGGAGATGAGGAGCGGGAGGAGTTATTGTCCTGT
CTATCTTCTAGGCTCGAGCAGTGGGGGAGAAGAGAGAGAGAGTGGAGAGC
AAGGTACGAGTAGAAGAACAGAAAAAACAACAAGAAGAAGATCATCTCCA
TCATTAA
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Coding sequence (CDS) from alignment at scaffold_1:1128202..1130208-

>mRNA_1635 ID=mRNA_1635|Name=jgi.p|Nanoce1779_2|572943|organism=Nannochloropsis oceanica|type=CDS|length=2088bp|location=Sequence derived from alignment at scaffold_1:1128202..1130208- (Nannochloropsis oceanica)
TGTTGGGATAAGCTTCGGCATTACTGAGCACATCGATTTGGGGCTGAAAT
ACGACCCGTCTACCGGCATCTACGGTATGGATTTCTACGTCGTGTTGGGC
CGCAAGGGTTTCCGTGTAGGGCGCAGGAAGCTTAAGGTGGGGCGTGTAGG
AGCTCCTCACCGAGTGACGCAGAAGGATGCCATCGACTGGTTCCAGCAGA
AGTTTGAGGGCATCGGTGGAGAAGCTGATTCTCAACTGCTGTGTGGGAGA
GTCGGGCGATCGCCTGACGCGCGCCGCCAAGGTGTTGGAGCAGCTGTCGG
GGCAAACCCCCGTCTACTCGAAGGCCCGTTACACCGTCCGCTCCTTCGGC
ATCCGCCGTAACGAGAAGATCTCCGTGCACGTGACCCTGCGAGGGGATAA
GGCCAACGAAATCCTGGACCGTGGCTTAAAGGTGAAGGAGTATGAGTTGA
AGAGGAAAAACTTCTCGGCCGGCGGAAACTTTGATGGCAGATAAGAAGAA
CAACCCCATGCGGGAGCTTGTGTGTTGGGATAAGCTTCGGCATTACTGAG
CACATCGATTTGGGGCTGAAATACGACCCGTCTACCGGCATCTACGGTAT
GGATTTCTACGTCGTGTTGGGCCGCAAGGGTTTCCGTGTAGGGCGCAGGA
AGCTTAAGGTGGGGCGTGTAGGAGCTCCTCACCGAGTGACGCAGAAGGAT
GCCATCGACTGGTTCCAGCAGAAGTTTGAGGGCATCGGTGGAGAAGCTGA
TTCTCAACTGCTGTGTGGGAGAGTCGGGCGATCGCCTGACGCGCGCCGCC
AAGGTGTTGGAGCAGCTGTCGGGGCAAACCCCCGTCTACTCGAAGGCCCG
TTACACCGTCCGCTCCTTCGGCATCCGCCGTAACGAGAAGATCTCCGTGC
ACGTGACCCTGCGAGGGGATAAGGCCAACGAAATCCTGGACCGTGGCTTA
AAGGTGAAGGAGTATGAGTTGAAGAGGAAAAACTTCTCGGCCGGCGGAAA
CTTTGATGGCAGATAAGAAGAACAACCCCATGCGGGAGCTTGTGTGTTGG
GATAAGCTTCGGCATTACTGAGCACATCGATTTGGGGCTGAAATACGACC
CGTCTACCGGCATCTACGGTATGGATTTCTACGTCGTGTTGGGCCGCAAG
GGTTTCCGTGTAGGGCGCAGGAAGCTTAAGGTGGGGCGTGTAGGAGCTCC
TCACCGAGTGACGCAGAAGGATGCCATCGACTGGTTCCAGCAGAAGTTTG
AGGGCATCGGTGGAGAAGCTGATTCTCAACTGCTGTGTGGGAGAGTCGGG
CGATCGCCTGACGCGCGCCGCCAAGGTGTTGGAGCAGCTGTCGGGGCAAA
CCCCCGTCTACTCGAAGGCCCGTTACACCGTCCGCTCCTTCGGCATCCGC
CGTAACGAGAAGATCTCCGTGCACGTGACCCTGCGAGGGGATAAGGCCAA
CGAAATCCTGGACCGTGGCTTAAAGGTGAAGGAGTATGAGTTGAAGAGGA
AAAACTTCTCGGCCGGCGGAAACTTTGATGGCAGATAAGAAGAACAACCC
CATGCGGGAGCTTGTGTGTTGGGATAAGCTTCGGCATTACTGAGCACATC
GATTTGGGGCTGAAATACGACCCGTCTACCGGCATCTACGGTATGGATTT
CTACGTCGTGTTGGGCCGCAAGGGTTTCCGTGTAGGGCGCAGGAAGCTTA
AGGTGGGGCGTGTAGGAGCTCCTCACCGAGTGACGCAGAAGGATGCCATC
GACTGGTTCCAGCAGAAGTTTGAGGGCATCGGTGGAGAAGCTGATTCTCA
ACTGCTGTGTGGGAGAGTCGGGCGATCGCCTGACGCGCGCCGCCAAGGTG
TTGGAGCAGCTGTCGGGGCAAACCCCCGTCTACTCGAAGGCCCGTTACAC
CGTCCGCTCCTTCGGCATCCGCCGTAACGAGAAGATCTCCGTGCACGTGA
CCCTGCGAGGGGATAAGGCCAACGAAATCCTGGACCGTGGCTTAAAGGTG
AAGGAGTATGAGTTGAAGAGGAAAAACTTCTCGGCCGGCGGAAACTTTGA
TGGCAGATAAGAAGAACAACCCCATGCGGGAGCTTGTG
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Synonyms
Publications