jgi.p|Nanoce1779_2|572935, mRNA_1633 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572935
Unique NamemRNA_1633
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length813
Alignment locationscaffold_1:1122357..1123332 +

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Properties
Property NameValue
TranscriptId573021
TrackFilteredModels2
ProteinId572935
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1122357..1123332 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572935gene_1633Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572935mRNA_1633-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1633CDS_1633Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1633 ID=mRNA_1633|Name=jgi.p|Nanoce1779_2|572935|organism=Nannochloropsis oceanica|type=mRNA|length=813bp
ACAGGTCCTTGACCACCACAAGCATGAACGGTTTGCGCGCCTGCTGCAGA
ACTCCAAGAGCAGTCCTGGTCGGTGGCTTTTTGCCCTCGATCCGACCCCG
ACAAGCCTCCACCCCACACCAACCCCTGTCCTTACATCTCGTTATCTCGC
ATCAAATCAAGCGTCATCTTGCCATGATCAATGGAAACCAAGTCCGGGTG
GGCAATGTGCTTGAATACAAGGGGAAGCTTGTGGTTGTCAGAAGAGCTCA
AGCGGTCAAGCCAGGGAAAGGTGGCGCGTTTAATCAGGTGGAGTTGCGTG
ACATCCGGACAGGCCTCAAATATCACGAGCGGCTGCGCTCCTCAGAAAGT
GTGGAAAAAGTCCGGCTAGACGAAGAGCAGCCATTTGACTACCTATACGA
TGAAGGAGACAAATTGATCTTAATGAACAAAGAGGACTTCACTCAAGTCG
AAGTCCTGAAAGACATGCTTTCAGAAACGGAGCAGAAATTCTTGGAGGAG
GGTCTAACGTTGCGCGTGCAGCTTTATGAAGGGAGTCCGTTGTTGGTGCG
CTTGCCAAAGACAATGGTAATGGAGGTGGTGAGCACGGAGCAGTTTAGCA
AGGGAAATCAGGCCAGTCCTACATTTAAGCCGGCAACATTGAGGAACGGG
GAGGTAATTAAAGTGCCACCTTTCGTGGAGGTGGGGGAAAAGGTGGTGAT
TGATACGGAGGAGATGGAGTACCAATCACGGGTGTAATATTGAGGGTGCG
AGGGGGGGAGGGACGGAGAGAAGGAGGGATGGAGAGAGGGGTCGCGGGCA
CCTAAATGTGCAT
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protein sequence of jgi.p|Nanoce1779_2|572935

>mRNA_1633-protein ID=mRNA_1633-protein|Name=jgi.p|Nanoce1779_2|572935|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MNGLRACCRTPRAVLVGGFLPSIRPRQASTPHQPLSLHLVISHQIKRHLA
MINGNQVRVGNVLEYKGKLVVVRRAQAVKPGKGGAFNQVELRDIRTGLKY
HERLRSSESVEKVRLDEEQPFDYLYDEGDKLILMNKEDFTQVEVLKDMLS
ETEQKFLEEGLTLRVQLYEGSPLLVRLPKTMVMEVVSTEQFSKGNQASPT
FKPATLRNGEVIKVPPFVEVGEKVVIDTEEMEYQSRV*
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mRNA from alignment at scaffold_1:1122357..1123332+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1633 ID=mRNA_1633|Name=jgi.p|Nanoce1779_2|572935|organism=Nannochloropsis oceanica|type=mRNA|length=976bp|location=Sequence derived from alignment at scaffold_1:1122357..1123332+ (Nannochloropsis oceanica)
ACAGGTCCTTGACCACCACAAGCATGAACGGTTTGCGCGCCTGCTGCAGA
ACTCCAAGAGCAGTCCTGGTCGGTGGCTTTTTGCCCTCGATCCGACCCCG
ACAAGCCTCCACCCCACACCAACCCCTGTCCTTACATCTCGTTATCTCGC
ATCAAATCAAGCGTCATCTTGCCATGATCAATGGAAACCAAGTCCGGGTG
GGCAATGTGCTTGAATACAAGGGGAAGCTTGTGGTTGTCAGAAGAGCTCA
AGCGGTCAAGCCAGGGAAAGGTGGCGCGTTTAATCAGGTGGAGTTGCGTG
ACATCCGGACAGGTGTGTGCTAGTGTTGGCTCATGGAGAAGGGGGAGGGG
ATATAGTGAGAGACTAGGTGTGAAAGGCTAGCCGTGCCTAGGACGCGACG
ATGGGAAAGTGTCGCCCCAGCAAGGAGGCTCGCATGCATCATCATTTTCT
ACCCCTACTCTTATCCCCACGACAGGCCTCAAATATCACGAGCGGCTGCG
CTCCTCAGAAAGTGTGGAAAAAGTCCGGCTAGACGAAGAGCAGCCATTTG
ACTACCTATACGATGAAGGAGACAAATTGATCTTAATGAACAAAGAGGAC
TTCACTCAAGTCGAAGTCCTGAAAGACATGCTTTCAGAAACGGAGCAGAA
ATTCTTGGAGGAGGGTCTAACGTTGCGCGTGCAGCTTTATGAAGGGAGTC
CGTTGTTGGTGCGCTTGCCAAAGACAATGGTAATGGAGGTGGTGAGCACG
GAGCAGTTTAGCAAGGGAAATCAGGCCAGTCCTACATTTAAGCCGGCAAC
ATTGAGGAACGGGGAGGTAATTAAAGTGCCACCTTTCGTGGAGGTGGGGG
AAAAGGTGGTGATTGATACGGAGGAGATGGAGTACCAATCACGGGTGTAA
TATTGAGGGTGCGAGGGGGGGAGGGACGGAGAGAAGGAGGGATGGAGAGA
GGGGTCGCGGGCACCTAAATGTGCAT
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Coding sequence (CDS) from alignment at scaffold_1:1122357..1123332+

>mRNA_1633 ID=mRNA_1633|Name=jgi.p|Nanoce1779_2|572935|organism=Nannochloropsis oceanica|type=CDS|length=1428bp|location=Sequence derived from alignment at scaffold_1:1122357..1123332+ (Nannochloropsis oceanica)
ATGAACGGTTTGCGCGCCTGCTGCAGAACTCCAAGAGCAGTCCTGGTCGG
TGGCTTTTTGCCCTCGATCCGACCCCGACAAGCCTCCACCCCACACCAAC
CCCTGTCCTTACATCTCGTTATCTCGCATCAAATCAAGCGTCATCTTGCC
ATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTGCTTGAATACAAGGG
GAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAAGCCAGGGAAAGGTG
GCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGACAGGCCTCAAATAT
CACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAAGTCCGGCTAGACGA
AGAGCAGCCATTTGACTACCTATACGATGAAGGAGACAAATTGATCTTAA
TGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGAAAGACATGCTTTCA
GAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACGTTGCGCGTGCAGCT
TTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAAGACAATGGTAATGG
AGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATCAGGCCAGTCCTACA
TTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATTAAAGTGCCACCTTT
CGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGAGGAGATGGAGTACC
AATCACGGGTGTAAATGAACGGTTTGCGCGCCTGCTGCAGAACTCCAAGA
GCAGTCCTGGTCGGTGGCTTTTTGCCCTCGATCCGACCCCGACAAGCCTC
CACCCCACACCAACCCCTGTCCTTACATCTCGTTATCTCGCATCAAATCA
AGCGTCATCTTGCCATGATCAATGGAAACCAAGTCCGGGTGGGCAATGTG
CTTGAATACAAGGGGAAGCTTGTGGTTGTCAGAAGAGCTCAAGCGGTCAA
GCCAGGGAAAGGTGGCGCGTTTAATCAGGTGGAGTTGCGTGACATCCGGA
CAGGCCTCAAATATCACGAGCGGCTGCGCTCCTCAGAAAGTGTGGAAAAA
GTCCGGCTAGACGAAGAGCAGCCATTTGACTACCTATACGATGAAGGAGA
CAAATTGATCTTAATGAACAAAGAGGACTTCACTCAAGTCGAAGTCCTGA
AAGACATGCTTTCAGAAACGGAGCAGAAATTCTTGGAGGAGGGTCTAACG
TTGCGCGTGCAGCTTTATGAAGGGAGTCCGTTGTTGGTGCGCTTGCCAAA
GACAATGGTAATGGAGGTGGTGAGCACGGAGCAGTTTAGCAAGGGAAATC
AGGCCAGTCCTACATTTAAGCCGGCAACATTGAGGAACGGGGAGGTAATT
AAAGTGCCACCTTTCGTGGAGGTGGGGGAAAAGGTGGTGATTGATACGGA
GGAGATGGAGTACCAATCACGGGTGTAA
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Synonyms
Publications