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Properties
| Property Name | Value |
|---|
| TranscriptId | 549596 |
| Track | FilteredModels2 |
| ProteinId | 549510 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1119955..1122109 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1632 ID=mRNA_1632|Name=jgi.p|Nanoce1779_2|549510|organism=Nannochloropsis oceanica|type=mRNA|length=2113bp
ATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCC
TCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACG
TTCCCATACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGT
ATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTC
TTCTTCTACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCG
ACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTG
CCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCT
CCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCT
TGTCCGGACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGC
TTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAA
CGCGGGGTTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCA
TCAAGAGCCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGC
CCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTG
GTGCACGCCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCG
AGGCGGCCATAGAACGGTTGCGAGCGCATCATCAGCAGCAGCAGCCATTC
TTCTTCGCGGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAG
AGCGTACGTCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCA
ATGCTCTTCGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAAT
TGTACTATGGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATC
GCCGCACGAGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTT
ACTATGCAGCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGAT
GCGCTGGTGGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTC
AGACCATGGCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATA
CGCGGGAGATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTA
TCGACATCTAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGT
AGCAGCAGGAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTT
ATCCCACTTTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTG
CGGGGTAAGAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAA
CAGTACTGCTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCG
CGGCCTTCTCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGT
GGATTAGCACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGG
AAATGAGAAGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGC
GCTACACGGAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGG
AGTGCGGAGGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAG
GCAAGAGGGGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTC
GATTCCAAGATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTT
TCTTCGTTGCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGG
AGCCTCTGTGACTGTTGAGTAGATAAGGTAAAAACAGATGGATGGAGAAG
CGAACTTGAAAGTCTCCAGGTGATAAATAGTCAAATATTCGTCTGGGGAT
GATTACGGCAGAGATGAACTGCCACTCTTGCTGATTGAAAGGGACGTATT
TATTTGTGGGTTGTCCTCCCTGGGGCACAAATAGAGCAAGTAAATGAAAG
AGGAAGGACTTGTAGAAGGTGAAAAGCAGGAGAAACTTAAAAGGAGAAAT
AAACACACATGCA back to topprotein sequence of jgi.p|Nanoce1779_2|549510 >mRNA_1632-protein ID=mRNA_1632-protein|Name=jgi.p|Nanoce1779_2|549510|organism=Nannochloropsis oceanica|type=polypeptide|length=624bp
MASIVTRNPGVLAPRHPPIVLRLILGLLLILLDVPIHPTTTSKLFCQGQG
IGKEATPSLATSTSTSSSSTLPPPVKNILYIIVDDLTADLALFGGKVNQV
PMPNLEGRLAPRAVNFLRSYAQQSICGPSRNSFLSGRHPDETQTYTFRRS
FRDAFPDAVSLPQAFKNAGFLTCGFGKTYHDEGIKSPPDYDNPYSWSPEC
PYYAPPEEKCGPDHHGWCTPDMPEGNFTDGLVTEAAIERLRAHHQQQQPF
FFAVGIRKPHLDWAVPRAYVDAQVVQEHIEIPSNALRVSPPGMPPVSYFN
CTMESPWQQAMSEIALSPHEPLEDELEQELRRAYYAAISWMDANVGKLLD
ALVELGLEESTSIVFHSDHGFHLSEEGMWCKQNTREIGTRVPLLISTPSL
STSSKKPAALAAPTEQVAAGEMHSNAIVQLVDIYPTLLELAGLALPDLSL
RGKSLVPLLRYAQVAGNSTAAAAAAAAAADGFVAAFSQYPRCLSTPLAPS
GLAHEGFLWNRQCAMLGNEKIDVMGYSIRVEGWRYTEWYQWEGRRSRPRW
SAEGQVAVELYEMDKGRQEGKEEDVTPNVVEDGRFQDVRARLSRILYEHF
SSLQREQKEGKEVGIEGASVTVE* back to topmRNA from alignment at scaffold_1:1119955..1122109- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1632 ID=mRNA_1632|Name=jgi.p|Nanoce1779_2|549510|organism=Nannochloropsis oceanica|type=mRNA|length=2155bp|location=Sequence derived from alignment at scaffold_1:1119955..1122109- (Nannochloropsis oceanica)
ATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCC
TCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACG
TTCCCATACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGT
ATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTC
TTCTTCTACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCG
ACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTG
CCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCT
CCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCT
TGTCCGGACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGC
TTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAA
CGCGGGGTTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCA
TCAAGAGCCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGC
CCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTG
GTGCACGCCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCG
AGGCGGCCATAGAACGGTTGCGAGCGCATGTAAACTTCTTCAAGCAGCAA
CAGCAACAGCATCAGCATCAGCATCAGCAGCAGCAGCCATTCTTCTTCGC
GGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAGAGCGTACG
TCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCAATGCTCTT
CGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAATTGTACTAT
GGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATCGCCGCACG
AGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTTACTATGCA
GCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGATGCGCTGGT
GGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTCAGACCATG
GCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATACGCGGGAG
ATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTATCGACATC
TAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGTAGCAGCAG
GAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTTATCCCACT
TTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTGCGGGGTAA
GAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAACAGTACTG
CTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCGCGGCCTTC
TCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGTGGATTAGC
ACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGGAAATGAGA
AGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGCGCTACACG
GAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGGAGTGCGGA
GGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAGGCAAGAGG
GGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTCGATTCCAA
GATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTTTCTTCGTT
GCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGGAGCCTCTG
TGACTGTTGAGTAGATAAGGTAAAAACAGATGGATGGAGAAGCGAACTTG
AAAGTCTCCAGGTGATAAATAGTCAAATATTCGTCTGGGGATGATTACGG
CAGAGATGAACTGCCACTCTTGCTGATTGAAAGGGACGTATTTATTTGTG
GGTTGTCCTCCCTGGGGCACAAATAGAGCAAGTAAATGAAAGAGGAAGGA
CTTGTAGAAGGTGAAAAGCAGGAGAAACTTAAAAGGAGAAATAAACACAC
ATGCA back to topCoding sequence (CDS) from alignment at scaffold_1:1119955..1122109- >mRNA_1632 ID=mRNA_1632|Name=jgi.p|Nanoce1779_2|549510|organism=Nannochloropsis oceanica|type=CDS|length=3744bp|location=Sequence derived from alignment at scaffold_1:1119955..1122109- (Nannochloropsis oceanica)
CATCAGCAGCAGCAGCCATTCTTCTTCGCGGTGGGCATTCGTAAGCCACA
TCTTGATTGGGCGGTACCCAGAGCGTACGTCGATGCACAGGTTGTTCAGG
AACACATTGAAATTCCCTCCAATGCTCTTCGTGTGAGTCCTCCCGGGATG
CCACCCGTATCTTATTTCAATTGTACTATGGAAAGTCCGTGGCAGCAGGC
GATGAGTGAAATCGCTCTATCGCCGCACGAGCCGCTTGAGGACGAATTAG
AGCAGGAGTTGCGACGTGCTTACTATGCAGCAATTTCGTGGATGGACGCG
AATGTAGGCAAACTTCTTGATGCGCTGGTGGAGTTGGGGCTTGAGGAGAG
CACGTCCATCGTGTTTCATTCAGACCATGGCTTTCACTTGTCAGAGGAAG
GGATGTGGTGTAAACAAAATACGCGGGAGATTGGCACACGTGTGCCCCTG
CTAATTTCCACTCCGAGCTTATCGACATCTAGCAAAAAGCCAGCCGCGTT
AGCAGCGCCAACAGAACAAGTAGCAGCAGGAGAGATGCATTCAAATGCTA
TTGTACAGCTGGTTGACATTTATCCCACTTTGCTTGAGCTCGCAGGCCTG
GCATTACCTGACCTTAGCCTGCGGGGTAAGAGTTTGGTGCCCTTGTTGCG
GTACGCCCAGGTAGCAGGAAACAGTACTGCTGCTGCAGCAGCTGCTGCTG
CTGCTGCGGATGGTTTTGTCGCGGCCTTCTCTCAATATCCTCGTTGTTTA
AGCACACCGTTGGCGCCCAGTGGATTAGCACACGAAGGTTTTCTCTGGAA
TCGACAATGCGCCATGCTAGGAAATGAGAAGATTGATGTGATGGGGTATA
GTATTCGAGTGGAGGGATGGCGCTACACGGAGTGGTATCAGTGGGAGGGA
CGTCGCTCCCGCCCAAGATGGAGTGCGGAGGGGCAGGTAGCGGTGGAATT
GTATGAGATGGATAAAGGAAGGCAAGAGGGGAAGGAGGAAGATGTCACGC
CAAATGTGGTCGAGGATGGTCGATTCCAAGATGTGCGGGCACGGTTGAGT
CGGATTTTGTACGAGCACTTTTCTTCGTTGCAGAGAGAACAGAAGGAGGG
TAAAGAGGTTGGGATCGAGGGAGCCTCTGTGACTGTTGAGTAGATGGCAA
GCATTGTGACCCGGAACCCTGGAGTGCTTGCCCCACGACACCCTCCCATC
GTCCTGCGTCTCATCCTCGGCCTTCTACTGATCCTTTTGGACGTTCCCAT
ACACCCCACGACGACATCGAAGCTGTTCTGTCAAGGTCAAGGTATTGGCA
AGGAGGCCACTCCCTCGCTCGCAACCTCCACCTCCACCTCCTCTTCTTCT
ACCCTCCCTCCTCCGGTGAAAAACATATTGTACATAATTGTCGACGACCT
TACTGCCGACTTGGCCCTTTTTGGGGGCAAGGTTAATCAAGTGCCAATGC
CAAACCTAGAAGGTCGTCTAGCTCCACGCGCCGTAAACTTCCTCCGCTCA
TACGCCCAGCAAAGCATCTGTGGGCCCTCGCGCAACTCCTTCTTGTCCGG
ACGACACCCAGACGAGACTCAAACCTATACGTTTCGACGAAGCTTTAGGG
ATGCGTTTCCAGACGCCGTGTCACTGCCTCAAGCCTTTAAAAACGCGGGG
TTTCTGACATGCGGGTTTGGCAAGACATACCATGACGAGGGCATCAAGAG
CCCCCCAGATTACGACAACCCGTACTCGTGGTCACCCGAGTGCCCCTATT
ACGCTCCCCCCGAGGAAAAGTGTGGTCCGGATCACCATGGTTGGTGCACG
CCGGACATGCCCGAAGGCAATTTCACTGATGGTCTGGTCACCGAGGCGGC
CATAGAACGGTTGCGAGCGCATCATCAGCAGCAGCAGCCATTCTTCTTCG
CGGTGGGCATTCGTAAGCCACATCTTGATTGGGCGGTACCCAGAGCGTAC
GTCGATGCACAGGTTGTTCAGGAACACATTGAAATTCCCTCCAATGCTCT
TCGTGTGAGTCCTCCCGGGATGCCACCCGTATCTTATTTCAATTGTACTA
TGGAAAGTCCGTGGCAGCAGGCGATGAGTGAAATCGCTCTATCGCCGCAC
GAGCCGCTTGAGGACGAATTAGAGCAGGAGTTGCGACGTGCTTACTATGC
AGCAATTTCGTGGATGGACGCGAATGTAGGCAAACTTCTTGATGCGCTGG
TGGAGTTGGGGCTTGAGGAGAGCACGTCCATCGTGTTTCATTCAGACCAT
GGCTTTCACTTGTCAGAGGAAGGGATGTGGTGTAAACAAAATACGCGGGA
GATTGGCACACGTGTGCCCCTGCTAATTTCCACTCCGAGCTTATCGACAT
CTAGCAAAAAGCCAGCCGCGTTAGCAGCGCCAACAGAACAAGTAGCAGCA
GGAGAGATGCATTCAAATGCTATTGTACAGCTGGTTGACATTTATCCCAC
TTTGCTTGAGCTCGCAGGCCTGGCATTACCTGACCTTAGCCTGCGGGGTA
AGAGTTTGGTGCCCTTGTTGCGGTACGCCCAGGTAGCAGGAAACAGTACT
GCTGCTGCAGCAGCTGCTGCTGCTGCTGCGGATGGTTTTGTCGCGGCCTT
CTCTCAATATCCTCGTTGTTTAAGCACACCGTTGGCGCCCAGTGGATTAG
CACACGAAGGTTTTCTCTGGAATCGACAATGCGCCATGCTAGGAAATGAG
AAGATTGATGTGATGGGGTATAGTATTCGAGTGGAGGGATGGCGCTACAC
GGAGTGGTATCAGTGGGAGGGACGTCGCTCCCGCCCAAGATGGAGTGCGG
AGGGGCAGGTAGCGGTGGAATTGTATGAGATGGATAAAGGAAGGCAAGAG
GGGAAGGAGGAAGATGTCACGCCAAATGTGGTCGAGGATGGTCGATTCCA
AGATGTGCGGGCACGGTTGAGTCGGATTTTGTACGAGCACTTTTCTTCGT
TGCAGAGAGAACAGAAGGAGGGTAAAGAGGTTGGGATCGAGGGAGCCTCT
GTGACTGTTGAGTAGATGGCAAGCATTGTGACCCGGAACCCTGGAGTGCT
TGCCCCACGACACCCTCCCATCGTCCTGCGTCTCATCCTCGGCCTTCTAC
TGATCCTTTTGGACGTTCCCATACACCCCACGACGACATCGAAGCTGTTC
TGTCAAGGTCAAGGTATTGGCAAGGAGGCCACTCCCTCGCTCGCAACCTC
CACCTCCACCTCCTCTTCTTCTACCCTCCCTCCTCCGGTGAAAAACATAT
TGTACATAATTGTCGACGACCTTACTGCCGACTTGGCCCTTTTTGGGGGC
AAGGTTAATCAAGTGCCAATGCCAAACCTAGAAGGTCGTCTAGCTCCACG
CGCCGTAAACTTCCTCCGCTCATACGCCCAGCAAAGCATCTGTGGGCCCT
CGCGCAACTCCTTCTTGTCCGGACGACACCCAGACGAGACTCAAACCTAT
ACGTTTCGACGAAGCTTTAGGGATGCGTTTCCAGACGCCGTGTCACTGCC
TCAAGCCTTTAAAAACGCGGGGTTTCTGACATGCGGGTTTGGCAAGACAT
ACCATGACGAGGGCATCAAGAGCCCCCCAGATTACGACAACCCGTACTCG
TGGTCACCCGAGTGCCCCTATTACGCTCCCCCCGAGGAAAAGTGTGGTCC
GGATCACCATGGTTGGTGCACGCCGGACATGCCCGAAGGCAATTTCACTG
ATGGTCTGGTCACCGAGGCGGCCATAGAACGGTTGCGAGCGCAT back to top
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