jgi.p|Nanoce1779_2|12771, mRNA_1631 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|12771
Unique Name	mRNA_1631
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2334
Alignment location	scaffold_1:1117633..1119966 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	12857
Track	FilteredModels2
ProteinId	12771

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1117633..1119966 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|12771	gene_1631	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|12771	mRNA_1631-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1631	CDS_1631	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1117633..1119966+
coding sequence from alignment at scaffold_1:1117633..1119966+

mRNA sequence

>mRNA_1631 ID=mRNA_1631|Name=jgi.p|Nanoce1779_2|12771|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp
CTTTCACCATCTTACACAGCGACGACAACGGCGACGACCGCACCCGAAGC
AGGAGCAACAGCATCAGCAGCAGCCATCTCATCTCCCCCCTTTCCTCTCC
CAACCGTCGCCGGCTTCATATTCTAATGCACGGTGTTTCTCCGCCCCATC
ATCTCCCGGACTGTCATCCCGCTACGCCGTCAAGCATGGGCCCGAGCCAC
GACCAATCCCAACAACAACTGCTGCAGCAACAGCAGCAGCCACAATCGCA
GCAACAACAGCCTTATTATGAGAGCACGCCCTTTTTCCACTTGCAGTCGC
CAAAAGAGGTGCAAGCGGGATTTTACATCTTTCTACTGACAGGCATATGT
GCCGTGTCTTCTCTGCTGTTCGGATACGACACAGGCGTGGTCTCGGGAGC
ATTGCTGTCGATAAGAAATGACCTCCAGTTGCGCGACTGGGAGCAGGAAT
TGATAGTCAGTATCACGACGATCGGCGCTGTGGTAGGTTCCTTGTCCGGA
GGGTACTTGAATGAAAAAGTAGGGAGGAGACCTGTCATCCTTTTAAGCTC
GGTTATTTTCACGGTGGGAGCGGTGGTGATGGGGGTGGCGCCTGATTTCT
CTGTGTTGACGGTGGGGCGGGCGATCATTGGGTTAGCTATAGGATTTTCG
AGCATGACTGTCCCTATATATATAGCAGAGGCAGCTCCTTCATCTATTCG
GGGGCGGTTGGTCACAATGAATTGTATTTTTATCACCGGGGGGCAATTTG
TCGCAGGGATGGTGGATGGCGGATTTGCCGAGGTACCGGGAGGGTGGAGA
TATATGCTCGGAGTAGCAGCAATCCCAGCAGCAATGCAATTTTTTGGGGT
GCTTTTTTTGCCGGAGTCGCCACGGTGGTTGGTGGCGAAGGGCAAGGTGG
AGGAAGCGAGGGAGGTCTTGGGGCGGTTGAGAGCGAGTGAGAATATTGGG
TTTGAGATGGCGGAGATTGAGGAGGATGTGGCTGCTACCGCATCGTTGCC
CTCGGCGAGATTTAAAGACCTGTGGGCGAGTCCACCGATTCGGAGAGCGA
TGGTGTTGGGGTGTGGCTTGATGTTGCTGCAGCAGTTGAGTGGGATTAAT
ACGGTCATGTATTATAGTGCGTCTATATATAATATGGCTGGGTTTTCGGA
CACGGCGTCCATTTGGTTGGCAGGGTTCACAGCATTAGCACAATTTGTAG
GGATGCTAGCGAACATGGCCCTGGTTGAGAAGTGGGGAAGACGGACGTTG
GTTTTGACCAGTCTGAGTCTCGTGATGATCTCTCTGGTGGCGATTGGCGC
GAGTTTTTATTTGGCCATGGCATCTTCGGCAGCGGTGAAGGTGGTGGACC
CGATGTGTGCGACGGTGAGCAACATTTTCGTGGGGGCTTTCCAGGTAACG
ACGTGTTTTCAATGTGTAGAGAATGCGGCGTGTGGATTTTGTCCTTCCCT
TGAGGCGTGTATGTCGGGAAATAAGACGATGGACACGATGGAAAGCTGCC
CTGTGAGTAACGGGGGAGGGCGAGGGATGGAGGGAGGGTGGACATACGGA
GTGTGCGAGAATCCGTACGGGTACATGAGCGTGGCGAGCATGGTATTGTA
CTTGTTTACGTTTGGGTTAGGCATGGGTGCCATGCCCTGGACGATTTGTG
CGGAGATTTTCCCGTTGCATGTCAGAAGCTTGGCGAATAGTCTGACGACG
GGTGTTAATTGGCTGGGGAACGTGGTAATCTCAGCGACGTTTTTGACAGT
GGCAAGTCCGCATGTATTGACGCAGTATGGAGCGTTTTGGATGTATGCGC
TTATTTCGTTCTCGGGGTTGGTGGGATTGTCGTTTACGTTGCCTGAGACG
AAAGGGGTGCCGCTGGAGGAAATTGAGGCGTTGTTTGTGAGGCCGGGGGA
TGGAATTCCCGGAATAGAGGAGGAGGAGGAAAGGGGGGAGGGGAGGGGGG
AAGAGAGGGAGGAGGAGGAGTTGTCGGTGTTGACGTCTTCATTGACAGGG
GGAGCGAGGGAAAGGAGAAGAATGACGGCACAAAATGCGGCGGTGGAAGG
AGGGAGGGTTGAAGTGGATAGTCATTGAGGGTGATTCTTACCATCGAAGA
GCACAACCATGACAATCAGAGAGTGAAATCAGAAGAGAGATGCGATAGAA
GAGAGACAGACGTGGACATGAGAAGTTAGAGAAAGGATAGAACTAGCGTA
TGAAATCAATTGCTTCGCCTGTCGATTTGTCGGCATGCCAAAGCACGAAA
AGAAGCAGCCAGCGGAGGACTGGCGTTTGTAGGGTAATGTAAATATTTAT
AGAAAAGTGAAAACAAAGCAATTGCATGTGTGTT

protein sequence of jgi.p|Nanoce1779_2|12771

>mRNA_1631-protein ID=mRNA_1631-protein|Name=jgi.p|Nanoce1779_2|12771|organism=Nannochloropsis oceanica|type=polypeptide|length=651bp
MHGVSPPHHLPDCHPATPSSMGPSHDQSQQQLLQQQQQPQSQQQQPYYES
TPFFHLQSPKEVQAGFYIFLLTGICAVSSLLFGYDTGVVSGALLSIRNDL
QLRDWEQELIVSITTIGAVVGSLSGGYLNEKVGRRPVILLSSVIFTVGAV
VMGVAPDFSVLTVGRAIIGLAIGFSSMTVPIYIAEAAPSSIRGRLVTMNC
IFITGGQFVAGMVDGGFAEVPGGWRYMLGVAAIPAAMQFFGVLFLPESPR
WLVAKGKVEEAREVLGRLRASENIGFEMAEIEEDVAATASLPSARFKDLW
ASPPIRRAMVLGCGLMLLQQLSGINTVMYYSASIYNMAGFSDTASIWLAG
FTALAQFVGMLANMALVEKWGRRTLVLTSLSLVMISLVAIGASFYLAMAS
SAAVKVVDPMCATVSNIFVGAFQVTTCFQCVENAACGFCPSLEACMSGNK
TMDTMESCPVSNGGGRGMEGGWTYGVCENPYGYMSVASMVLYLFTFGLGM
GAMPWTICAEIFPLHVRSLANSLTTGVNWLGNVVISATFLTVASPHVLTQ
YGAFWMYALISFSGLVGLSFTLPETKGVPLEEIEALFVRPGDGIPGIEEE
EERGEGRGEEREEEELSVLTSSLTGGARERRRMTAQNAAVEGGRVEVDSH
*

mRNA from alignment at scaffold_1:1117633..1119966+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1631 ID=mRNA_1631|Name=jgi.p|Nanoce1779_2|12771|organism=Nannochloropsis oceanica|type=mRNA|length=2334bp|location=Sequence derived from alignment at scaffold_1:1117633..1119966+ (Nannochloropsis oceanica)
CTTTCACCATCTTACACAGCGACGACAACGGCGACGACCGCACCCGAAGC
AGGAGCAACAGCATCAGCAGCAGCCATCTCATCTCCCCCCTTTCCTCTCC
CAACCGTCGCCGGCTTCATATTCTAATGCACGGTGTTTCTCCGCCCCATC
ATCTCCCGGACTGTCATCCCGCTACGCCGTCAAGCATGGGCCCGAGCCAC
GACCAATCCCAACAACAACTGCTGCAGCAACAGCAGCAGCCACAATCGCA
GCAACAACAGCCTTATTATGAGAGCACGCCCTTTTTCCACTTGCAGTCGC
CAAAAGAGGTGCAAGCGGGATTTTACATCTTTCTACTGACAGGCATATGT
GCCGTGTCTTCTCTGCTGTTCGGATACGACACAGGCGTGGTCTCGGGAGC
ATTGCTGTCGATAAGAAATGACCTCCAGTTGCGCGACTGGGAGCAGGAAT
TGATAGTCAGTATCACGACGATCGGCGCTGTGGTAGGTTCCTTGTCCGGA
GGGTACTTGAATGAAAAAGTAGGGAGGAGACCTGTCATCCTTTTAAGCTC
GGTTATTTTCACGGTGGGAGCGGTGGTGATGGGGGTGGCGCCTGATTTCT
CTGTGTTGACGGTGGGGCGGGCGATCATTGGGTTAGCTATAGGATTTTCG
AGCATGACTGTCCCTATATATATAGCAGAGGCAGCTCCTTCATCTATTCG
GGGGCGGTTGGTCACAATGAATTGTATTTTTATCACCGGGGGGCAATTTG
TCGCAGGGATGGTGGATGGCGGATTTGCCGAGGTACCGGGAGGGTGGAGA
TATATGCTCGGAGTAGCAGCAATCCCAGCAGCAATGCAATTTTTTGGGGT
GCTTTTTTTGCCGGAGTCGCCACGGTGGTTGGTGGCGAAGGGCAAGGTGG
AGGAAGCGAGGGAGGTCTTGGGGCGGTTGAGAGCGAGTGAGAATATTGGG
TTTGAGATGGCGGAGATTGAGGAGGATGTGGCTGCTACCGCATCGTTGCC
CTCGGCGAGATTTAAAGACCTGTGGGCGAGTCCACCGATTCGGAGAGCGA
TGGTGTTGGGGTGTGGCTTGATGTTGCTGCAGCAGTTGAGTGGGATTAAT
ACGGTCATGTATTATAGTGCGTCTATATATAATATGGCTGGGTTTTCGGA
CACGGCGTCCATTTGGTTGGCAGGGTTCACAGCATTAGCACAATTTGTAG
GGATGCTAGCGAACATGGCCCTGGTTGAGAAGTGGGGAAGACGGACGTTG
GTTTTGACCAGTCTGAGTCTCGTGATGATCTCTCTGGTGGCGATTGGCGC
GAGTTTTTATTTGGCCATGGCATCTTCGGCAGCGGTGAAGGTGGTGGACC
CGATGTGTGCGACGGTGAGCAACATTTTCGTGGGGGCTTTCCAGGTAACG
ACGTGTTTTCAATGTGTAGAGAATGCGGCGTGTGGATTTTGTCCTTCCCT
TGAGGCGTGTATGTCGGGAAATAAGACGATGGACACGATGGAAAGCTGCC
CTGTGAGTAACGGGGGAGGGCGAGGGATGGAGGGAGGGTGGACATACGGA
GTGTGCGAGAATCCGTACGGGTACATGAGCGTGGCGAGCATGGTATTGTA
CTTGTTTACGTTTGGGTTAGGCATGGGTGCCATGCCCTGGACGATTTGTG
CGGAGATTTTCCCGTTGCATGTCAGAAGCTTGGCGAATAGTCTGACGACG
GGTGTTAATTGGCTGGGGAACGTGGTAATCTCAGCGACGTTTTTGACAGT
GGCAAGTCCGCATGTATTGACGCAGTATGGAGCGTTTTGGATGTATGCGC
TTATTTCGTTCTCGGGGTTGGTGGGATTGTCGTTTACGTTGCCTGAGACG
AAAGGGGTGCCGCTGGAGGAAATTGAGGCGTTGTTTGTGAGGCCGGGGGA
TGGAATTCCCGGAATAGAGGAGGAGGAGGAAAGGGGGGAGGGGAGGGGGG
AAGAGAGGGAGGAGGAGGAGTTGTCGGTGTTGACGTCTTCATTGACAGGG
GGAGCGAGGGAAAGGAGAAGAATGACGGCACAAAATGCGGCGGTGGAAGG
AGGGAGGGTTGAAGTGGATAGTCATTGAGGGTGATTCTTACCATCGAAGA
GCACAACCATGACAATCAGAGAGTGAAATCAGAAGAGAGATGCGATAGAA
GAGAGACAGACGTGGACATGAGAAGTTAGAGAAAGGATAGAACTAGCGTA
TGAAATCAATTGCTTCGCCTGTCGATTTGTCGGCATGCCAAAGCACGAAA
AGAAGCAGCCAGCGGAGGACTGGCGTTTGTAGGGTAATGTAAATATTTAT
AGAAAAGTGAAAACAAAGCAATTGCATGTGTGTT

Coding sequence (CDS) from alignment at scaffold_1:1117633..1119966+

>mRNA_1631 ID=mRNA_1631|Name=jgi.p|Nanoce1779_2|12771|organism=Nannochloropsis oceanica|type=CDS|length=1953bp|location=Sequence derived from alignment at scaffold_1:1117633..1119966+ (Nannochloropsis oceanica)
ATGCACGGTGTTTCTCCGCCCCATCATCTCCCGGACTGTCATCCCGCTAC
GCCGTCAAGCATGGGCCCGAGCCACGACCAATCCCAACAACAACTGCTGC
AGCAACAGCAGCAGCCACAATCGCAGCAACAACAGCCTTATTATGAGAGC
ACGCCCTTTTTCCACTTGCAGTCGCCAAAAGAGGTGCAAGCGGGATTTTA
CATCTTTCTACTGACAGGCATATGTGCCGTGTCTTCTCTGCTGTTCGGAT
ACGACACAGGCGTGGTCTCGGGAGCATTGCTGTCGATAAGAAATGACCTC
CAGTTGCGCGACTGGGAGCAGGAATTGATAGTCAGTATCACGACGATCGG
CGCTGTGGTAGGTTCCTTGTCCGGAGGGTACTTGAATGAAAAAGTAGGGA
GGAGACCTGTCATCCTTTTAAGCTCGGTTATTTTCACGGTGGGAGCGGTG
GTGATGGGGGTGGCGCCTGATTTCTCTGTGTTGACGGTGGGGCGGGCGAT
CATTGGGTTAGCTATAGGATTTTCGAGCATGACTGTCCCTATATATATAG
CAGAGGCAGCTCCTTCATCTATTCGGGGGCGGTTGGTCACAATGAATTGT
ATTTTTATCACCGGGGGGCAATTTGTCGCAGGGATGGTGGATGGCGGATT
TGCCGAGGTACCGGGAGGGTGGAGATATATGCTCGGAGTAGCAGCAATCC
CAGCAGCAATGCAATTTTTTGGGGTGCTTTTTTTGCCGGAGTCGCCACGG
TGGTTGGTGGCGAAGGGCAAGGTGGAGGAAGCGAGGGAGGTCTTGGGGCG
GTTGAGAGCGAGTGAGAATATTGGGTTTGAGATGGCGGAGATTGAGGAGG
ATGTGGCTGCTACCGCATCGTTGCCCTCGGCGAGATTTAAAGACCTGTGG
GCGAGTCCACCGATTCGGAGAGCGATGGTGTTGGGGTGTGGCTTGATGTT
GCTGCAGCAGTTGAGTGGGATTAATACGGTCATGTATTATAGTGCGTCTA
TATATAATATGGCTGGGTTTTCGGACACGGCGTCCATTTGGTTGGCAGGG
TTCACAGCATTAGCACAATTTGTAGGGATGCTAGCGAACATGGCCCTGGT
TGAGAAGTGGGGAAGACGGACGTTGGTTTTGACCAGTCTGAGTCTCGTGA
TGATCTCTCTGGTGGCGATTGGCGCGAGTTTTTATTTGGCCATGGCATCT
TCGGCAGCGGTGAAGGTGGTGGACCCGATGTGTGCGACGGTGAGCAACAT
TTTCGTGGGGGCTTTCCAGGTAACGACGTGTTTTCAATGTGTAGAGAATG
CGGCGTGTGGATTTTGTCCTTCCCTTGAGGCGTGTATGTCGGGAAATAAG
ACGATGGACACGATGGAAAGCTGCCCTGTGAGTAACGGGGGAGGGCGAGG
GATGGAGGGAGGGTGGACATACGGAGTGTGCGAGAATCCGTACGGGTACA
TGAGCGTGGCGAGCATGGTATTGTACTTGTTTACGTTTGGGTTAGGCATG
GGTGCCATGCCCTGGACGATTTGTGCGGAGATTTTCCCGTTGCATGTCAG
AAGCTTGGCGAATAGTCTGACGACGGGTGTTAATTGGCTGGGGAACGTGG
TAATCTCAGCGACGTTTTTGACAGTGGCAAGTCCGCATGTATTGACGCAG
TATGGAGCGTTTTGGATGTATGCGCTTATTTCGTTCTCGGGGTTGGTGGG
ATTGTCGTTTACGTTGCCTGAGACGAAAGGGGTGCCGCTGGAGGAAATTG
AGGCGTTGTTTGTGAGGCCGGGGGATGGAATTCCCGGAATAGAGGAGGAG
GAGGAAAGGGGGGAGGGGAGGGGGGAAGAGAGGGAGGAGGAGGAGTTGTC
GGTGTTGACGTCTTCATTGACAGGGGGAGCGAGGGAAAGGAGAAGAATGA
CGGCACAAAATGCGGCGGTGGAAGGAGGGAGGGTTGAAGTGGATAGTCAT
TGA

Synonyms

Publications