jgi.p|Nanoce1779_2|562380, mRNA_1630 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|562380
Unique NamemRNA_1630
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length342
Alignment locationscaffold_1:1117373..1117714 -

Link to JBrowse

Properties
Property NameValue
TranscriptId562466
TrackFilteredModels2
ProteinId562380
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1117373..1117714 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562380gene_1630Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1630CDS_1630Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|562380mRNA_1630-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1630 ID=mRNA_1630|Name=jgi.p|Nanoce1779_2|562380|organism=Nannochloropsis oceanica|type=mRNA|length=342bp
ATGAGATGGCTGCTGCTGATGCTGTTGCTCCTGCTTCGGGTGCGGTCGTC
GCCGTTGTCGTCGCTGTGTAAGATGGTGAAAGACGGAGGGATCGAGGGAT
GGAGATGTGTTAGTGGCGAAGTACAGGGGGAAGTTCAAAATGTTTACGAC
TCCCGAGGTACGCCTGATAGAGGCCCCATAAGCTACACGTTCAGACTCGT
TACACTTGGAGGCAGGGCGTCGGAAAGAAGAAAGGGAGAATACATACACA
TAGATAGGGAGTTGGCGAATATAGGCATTCACGAGCAGTGTCACCTCTTG
CAGCCACAAAGATACGTATTCGTACAAGAAATGTGCACCTAA
back to top

protein sequence of jgi.p|Nanoce1779_2|562380

>mRNA_1630-protein ID=mRNA_1630-protein|Name=jgi.p|Nanoce1779_2|562380|organism=Nannochloropsis oceanica|type=polypeptide|length=114bp
MRWLLLMLLLLLRVRSSPLSSLCKMVKDGGIEGWRCVSGEVQGEVQNVYD
SRGTPDRGPISYTFRLVTLGGRASERRKGEYIHIDRELANIGIHEQCHLL
QPQRYVFVQEMCT*
back to top

mRNA from alignment at scaffold_1:1117373..1117714-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1630 ID=mRNA_1630|Name=jgi.p|Nanoce1779_2|562380|organism=Nannochloropsis oceanica|type=mRNA|length=342bp|location=Sequence derived from alignment at scaffold_1:1117373..1117714- (Nannochloropsis oceanica)
ATGAGATGGCTGCTGCTGATGCTGTTGCTCCTGCTTCGGGTGCGGTCGTC
GCCGTTGTCGTCGCTGTGTAAGATGGTGAAAGACGGAGGGATCGAGGGAT
GGAGATGTGTTAGTGGCGAAGTACAGGGGGAAGTTCAAAATGTTTACGAC
TCCCGAGGTACGCCTGATAGAGGCCCCATAAGCTACACGTTCAGACTCGT
TACACTTGGAGGCAGGGCGTCGGAAAGAAGAAAGGGAGAATACATACACA
TAGATAGGGAGTTGGCGAATATAGGCATTCACGAGCAGTGTCACCTCTTG
CAGCCACAAAGATACGTATTCGTACAAGAAATGTGCACCTAA
back to top

Coding sequence (CDS) from alignment at scaffold_1:1117373..1117714-

>mRNA_1630 ID=mRNA_1630|Name=jgi.p|Nanoce1779_2|562380|organism=Nannochloropsis oceanica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_1:1117373..1117714- (Nannochloropsis oceanica)
ATGAGATGGCTGCTGCTGATGCTGTTGCTCCTGCTTCGGGTGCGGTCGTC
GCCGTTGTCGTCGCTGTGTAAGATGGTGAAAGACGGAGGGATCGAGGGAT
GGAGATGTGTTAGTGGCGAAGTACAGGGGGAAGTTCAAAATGTTTACGAC
TCCCGAGGTACGCCTGATAGAGGCCCCATAAGCTACACGTTCAGACTCGT
TACACTTGGAGGCAGGGCGTCGGAAAGAAGAAAGGGAGAATACATACACA
TAGATAGGGAGTTGGCGAATATAGGCATTCACGAGCAGTGTCACCTCTTG
CAGCCACAAAGATACGTATTCGTACAAGAAATGTGCACCTAA
back to top
Synonyms
Publications