jgi.p|Nanoce1779_2|576408, mRNA_163 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576408
Unique Name	mRNA_163
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2606
Alignment location	scaffold_3:413772..416377 -

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Properties


Property Name	Value
TranscriptId	576494
Track	FilteredModels2
ProteinId	576408

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:413772..416377 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576408	gene_163	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576408	mRNA_163-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_163	CDS_163	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:413772..416377-
coding sequence from alignment at scaffold_3:413772..416377-

mRNA sequence

>mRNA_163 ID=mRNA_163|Name=jgi.p|Nanoce1779_2|576408|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp
AGCAAACAAGCTAACACTCGCACTAGCCAGCCAAAGCCGTCTTCTCGACC
GCCTTCCAAGCGCCGCAACACCACACGCCAGCAAAGCTCAACGCCACGCA
CGCGCCCCCCTTCGACACGAATCTCTTGAGTCCCTTCTGAACAGGGGACA
TAGAGGTTTGTCTTGCACATCACTAAGCACCACGGCTCGCACCGCCTCCG
CTTCTTTTACCTTAACCGTTAATCAACAAGCTTCTACCCCGGAAGGGTCT
CGTCAAGCAGTCCTCCCCATCGTCAGCAACCCTCCCAGACTCGCATTCAC
ACACTCTGCCGTCCACGGTGGAACCACTGTTTAAAAAAAGTAGCAGCATT
ATCAAGAGAAGCAGCAGCACTAACAGCAGCAGCAGCAGCAGCAGCAGCAA
GCCCTCTCCAAACATGACGGGCAGCACCAATAACAACACCAGCCTAAACA
GCACCAACGACGCCGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACG
CCTCTTCGCGCCGAATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCG
AACCAGCGTTACCCCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTG
ACGGCTCGTCGGCGAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGT
GACGAGTTGGATGATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCC
CACCACCACGGATGAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGG
ACGAGACGGGCGAGAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGC
GTGGGGCAGGGGTCGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGT
CTTAGTGACGGGGGGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATT
TGTTGACAAGGGGGGATGTCGTCATCTTGGTGGATGAGTTTAATGATTAT
TATGACACCTCGCTGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCA
TGGCTCGTCGAGGCTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATG
CGATGGAGCAGCTCTTCATCACAGAGAGTCCTAAACATGTGGTGCACATG
GCGGCACGGGCGGGGGTGAGGCCCTCGATTGATGATCCATTTGTGTACAT
CCATTCAAATATGTTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCC
ACGGGAATGAGTGTTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGC
TCGAGCCTGGAAGAATTCGGAGAGGACGATTACGTGGATAACCCCGTCTC
CCCCTACGCAGCCACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACC
ACTCGCTCTACAAGATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTAC
GGACCGAGGGGCAGGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGT
AAGTAGGGGGTTGGAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGG
ACTACACCTACATTGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGAT
CGTCCACTGGGATATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCG
GCTGAGTGATTTCATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGT
TGATCAAGATCTTGCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCC
AACATTTCGAAGGCGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTT
TGAGGAGGGCATTGCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCG
AGAAGGAGGCGATGGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATG
AAAAAGGGGTTGAGGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGA
GAAGGTGGCATCGACGATCTCGGTTTTCAGCCAAGGAGGATTGAGCGGTT
AGATAGACGGCGGTACTCGTAAATTCATTCCCTGAATTCAATGAAGGAGA
CGGCAGACGCGAAGAAGACAAATTATACTGACAAGCAACACAGAAAGCGA
CGGAGAGAGAGGTCATGGAAAATACATTTCTCAGTCATCTCTCAGTGAGA
GAGAAAGAGACGGAGATAGGGGCTAGTCTTAAAGGAGCGTATACAGAGAG
GAAATTCGAGATCAAGAGCAATAGCAAGAAGAGGATAGTATAGAGAAGAT
GAAGGAGAAAGAAAGCCGGACGCCGGAGACACAACTCCAATAAGGACAAC
TGCGGTGCGGTGGTCTGTAACAGGGGTGCGCGTCGTCGTCAAGAAGCACA
TGAAAAAAACACGCAGATGGAAGGAGATAAGGAAGACGAATGTAGACTCC
TGATCCTGATCGTTTTTGTAAATATTTGACGACAGTGATATGAAGAAAAA
TTAAAAAAACGGATGACGGTGATGACGGTGATAACAACGATGAAGAAATA
AGAGGAAGGAAAGTTACAAGACCTTGAACAGAGAATACAATATGATCAGG
GTCATAAGAAAGGTGAAGCGGCAGTAGTAGTTGCAGCAGTGGGAGTAAAA
ACGTTGAGGAGAGAAAAAGGAATATAAGAGTAAGAGAAGACGAAAAAGAT
CAAGGC

protein sequence of jgi.p|Nanoce1779_2|576408

>mRNA_163-protein ID=mRNA_163-protein|Name=jgi.p|Nanoce1779_2|576408|organism=Nannochloropsis oceanica|type=polypeptide|length=513bp
MTGSTNNNTSLNSTNDAALLVPDLQSIPTPLRAESLRQLEEVGSCRTSVT
PATHDGSSNRSGDGSSANTSREGRTSGPGDELDDQSRASGSDLMPPTTTD
ESDEEDNSSLATDETGENMPHQQADAFLSVGQGSLLSPPVEGGKKVLVTG
GAGFVGSHVADHLLTRGDVVILVDEFNDYYDTSLKRSNVAYLLAKHGSSR
LRVVEADICDAHAMEQLFITESPKHVVHMAARAGVRPSIDDPFVYIHSNM
LGTTRLLELARIHGNECFVWASSSSVYGGSSLEEFGEDDYVDNPVSPYAA
TKKACELMTYTYHSLYKMNVSGLRFFTVYGPRGRPDMAPFKFVDRVSRGL
EIQQFGDGSSSRDYTYIDDIVDGVVRALDRPLGYQIFNLGNGSPYRLSDF
IGLVEKNVGRSALIKILPDQPGDVPRTCANISKAQELLGYQPKVSFEEGI
ARTVDWYKGWKAEKEAMEARKKNERVEEMKKGLRESQGMMKGGTLEKVAS
TISVFSQGGLSG*

mRNA from alignment at scaffold_3:413772..416377-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_163 ID=mRNA_163|Name=jgi.p|Nanoce1779_2|576408|organism=Nannochloropsis oceanica|type=mRNA|length=2606bp|location=Sequence derived from alignment at scaffold_3:413772..416377- (Nannochloropsis oceanica)
AGCAAACAAGCTAACACTCGCACTAGCCAGCCAAAGCCGTCTTCTCGACC
GCCTTCCAAGCGCCGCAACACCACACGCCAGCAAAGCTCAACGCCACGCA
CGCGCCCCCCTTCGACACGAATCTCTTGAGTCCCTTCTGAACAGGGGACA
TAGAGGTTTGTCTTGCACATCACTAAGCACCACGGCTCGCACCGCCTCCG
CTTCTTTTACCTTAACCGTTAATCAACAAGCTTCTACCCCGGAAGGGTCT
CGTCAAGCAGTCCTCCCCATCGTCAGCAACCCTCCCAGACTCGCATTCAC
ACACTCTGCCGTCCACGGTGGAACCACTGTTTAAAAAAAGTAGCAGCATT
ATCAAGAGAAGCAGCAGCACTAACAGCAGCAGCAGCAGCAGCAGCAGCAA
GCCCTCTCCAAACATGACGGGCAGCACCAATAACAACACCAGCCTAAACA
GCACCAACGACGCCGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACG
CCTCTTCGCGCCGAATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCG
AACCAGCGTTACCCCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTG
ACGGCTCGTCGGCGAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGT
GACGAGTTGGATGATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCC
CACCACCACGGATGAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGG
ACGAGACGGGCGAGAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGC
GTGGGGCAGGGGTCGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGT
CTTAGTGACGGGGGGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATT
TGTTGACAAGGGGGGATGTCGTCATCTTGGTGGATGAGTTTAATGATTAT
TATGACACCTCGCTGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCA
TGGCTCGTCGAGGCTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATG
CGATGGAGCAGCTCTTCATCACAGAGAGTCCTAAACATGTGGTGCACATG
GCGGCACGGGCGGGGGTGAGGCCCTCGATTGATGATCCATTTGTGTACAT
CCATTCAAATATGTTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCC
ACGGGAATGAGTGTTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGC
TCGAGCCTGGAAGAATTCGGAGAGGACGATTACGTGGATAACCCCGTCTC
CCCCTACGCAGCCACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACC
ACTCGCTCTACAAGATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTAC
GGACCGAGGGGCAGGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGT
AAGTAGGGGGTTGGAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGG
ACTACACCTACATTGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGAT
CGTCCACTGGGATATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCG
GCTGAGTGATTTCATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGT
TGATCAAGATCTTGCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCC
AACATTTCGAAGGCGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTT
TGAGGAGGGCATTGCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCG
AGAAGGAGGCGATGGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATG
AAAAAGGGGTTGAGGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGA
GAAGGTGGCATCGACGATCTCGGTTTTCAGCCAAGGAGGATTGAGCGGTT
AGATAGACGGCGGTACTCGTAAATTCATTCCCTGAATTCAATGAAGGAGA
CGGCAGACGCGAAGAAGACAAATTATACTGACAAGCAACACAGAAAGCGA
CGGAGAGAGAGGTCATGGAAAATACATTTCTCAGTCATCTCTCAGTGAGA
GAGAAAGAGACGGAGATAGGGGCTAGTCTTAAAGGAGCGTATACAGAGAG
GAAATTCGAGATCAAGAGCAATAGCAAGAAGAGGATAGTATAGAGAAGAT
GAAGGAGAAAGAAAGCCGGACGCCGGAGACACAACTCCAATAAGGACAAC
TGCGGTGCGGTGGTCTGTAACAGGGGTGCGCGTCGTCGTCAAGAAGCACA
TGAAAAAAACACGCAGATGGAAGGAGATAAGGAAGACGAATGTAGACTCC
TGATCCTGATCGTTTTTGTAAATATTTGACGACAGTGATATGAAGAAAAA
TTAAAAAAACGGATGACGGTGATGACGGTGATAACAACGATGAAGAAATA
AGAGGAAGGAAAGTTACAAGACCTTGAACAGAGAATACAATATGATCAGG
GTCATAAGAAAGGTGAAGCGGCAGTAGTAGTTGCAGCAGTGGGAGTAAAA
ACGTTGAGGAGAGAAAAAGGAATATAAGAGTAAGAGAAGACGAAAAAGAT
CAAGGC

Coding sequence (CDS) from alignment at scaffold_3:413772..416377-

>mRNA_163 ID=mRNA_163|Name=jgi.p|Nanoce1779_2|576408|organism=Nannochloropsis oceanica|type=CDS|length=1539bp|location=Sequence derived from alignment at scaffold_3:413772..416377- (Nannochloropsis oceanica)
ATGACGGGCAGCACCAATAACAACACCAGCCTAAACAGCACCAACGACGC
CGCACTCCTGGTGCCGGACCTCCAGAGCATCCCCACGCCTCTTCGCGCCG
AATCTCTGCGCCAGCTTGAGGAGGTGGGCTCTTGCCGAACCAGCGTTACC
CCCGCTACGCATGATGGCAGCAGCAATAGGAGCGGTGACGGCTCGTCGGC
GAACACGAGCCGGGAAGGCAGGACGTCCGGGCCAGGTGACGAGTTGGATG
ATCAATCCCGTGCTTCCGGATCCGATCTGATGCCTCCCACCACCACGGAT
GAAAGTGACGAGGAGGATAATTCTTCCCTAGCGACGGACGAGACGGGCGA
GAACATGCCTCACCAGCAAGCCGATGCCTTCCTGAGCGTGGGGCAGGGGT
CGTTGCTTTCCCCTCCGGTGGAGGGAGGGAAAAAGGTCTTAGTGACGGGG
GGAGCTGGATTTGTGGGATCGCATGTGGCGGACCATTTGTTGACAAGGGG
GGATGTCGTCATCTTGGTGGATGAGTTTAATGATTATTATGACACCTCGC
TGAAAAGATCGAATGTCGCGTATTTGTTGGCGAAGCATGGCTCGTCGAGG
CTGAGGGTGGTGGAGGCCGATATTTGTGATGCGCATGCGATGGAGCAGCT
CTTCATCACAGAGAGTCCTAAACATGTGGTGCACATGGCGGCACGGGCGG
GGGTGAGGCCCTCGATTGATGATCCATTTGTGTACATCCATTCAAATATG
TTAGGAACGACGCGCTTGTTGGAATTGGCGCGGATCCACGGGAATGAGTG
TTTTGTCTGGGCAAGTTCTAGTAGCGTGTATGGGGGCTCGAGCCTGGAAG
AATTCGGAGAGGACGATTACGTGGATAACCCCGTCTCCCCCTACGCAGCC
ACGAAGAAAGCCTGCGAGCTGATGACTTACACCTACCACTCGCTCTACAA
GATGAATGTGTCGGGTCTGCGCTTCTTCACGGTCTACGGACCGAGGGGCA
GGCCGGACATGGCTCCTTTTAAGTTTGTGGATCGGGTAAGTAGGGGGTTG
GAGATCCAGCAGTTCGGGGATGGGAGCAGCTCCAGGGACTACACCTACAT
TGATGATATTGTTGACGGGGTAGTGCGCGCCTTGGATCGTCCACTGGGAT
ATCAGATTTTCAACCTGGGCAATGGGAGTCCGTACCGGCTGAGTGATTTC
ATCGGCTTAGTGGAGAAGAATGTGGGCAGGTCGGCGTTGATCAAGATCTT
GCCGGACCAGCCGGGGGATGTCCCTAGGACATGCGCCAACATTTCGAAGG
CGCAGGAATTGCTGGGATACCAGCCCAAGGTCTCGTTTGAGGAGGGCATT
GCCAGGACGGTGGACTGGTATAAGGGTTGGAAGGCCGAGAAGGAGGCGAT
GGAGGCACGGAAAAAGAACGAGAGGGTGGAGGAGATGAAAAAGGGGTTGA
GGGAGAGTCAGGGGATGATGAAGGGTGGGACCTTGGAGAAGGTGGCATCG
ACGATCTCGGTTTTCAGCCAAGGAGGATTGAGCGGTTAG

Synonyms

Publications