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Properties
| Property Name | Value |
|---|
| TranscriptId | 573005 |
| Track | FilteredModels2 |
| ProteinId | 572919 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:1111040..1113132 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1628 ID=mRNA_1628|Name=jgi.p|Nanoce1779_2|572919|organism=Nannochloropsis oceanica|type=mRNA|length=1544bp
AGCAATAGCACCGAACACTAACCGCCAACAACCATGCCGTCCGCTGCTTC
AAGCAAATGTCTCGCCATCGCCGCCCAGGACGAAAGTGGCGTCCTTGCCA
AGTTTGAGATCGAACGACGCACTCTCGGGCCCAGAGACGTGAAAGTATCT
ATCAAGTATTGCGGGATGTGCCACAGCGACTTGCACCAGATACGAGGCGA
ATGGGGCGATAGCAAGTACCCCATGGTCCCCGGCCACGAGATCGTCGGTC
TGGTCGAGGCCGTGGGGGAGCAGGTAACATCCTTCACAGTCGGAAACAAG
GTAGGGGTCGGCGTCTTCGTCGACTCCTGCCGTAACTGTGCCAATTGTCG
CTTGGGAGATGAGCAGTATTGCACCGGGAACGCCGACGTGCCAAGCGCGA
CTTTTACCTATAACTTCAAGCTGCCGGATGGGACTCTTGTGCAGGGTGGC
TATTCCAACACCATTGTGGTGGACGAAGGGTACGTGCTGCACATCCCCGA
GAACCTTCCACTTGATGCTGCTGCCCCTTTGCTTTGTGCGGGCATCACTG
TCTGGTCCCCGTTTGTGCATTACGGCGTAAGGAGCCACCATGCTGTCGGT
GTGGTCGGTTTGGGGGGTTTGGGCCACATGGCCGTTAAATTTGCGGTTGC
GATGGGGTGTAAGGTTGTTGTCATCTCGACAAGCCCGAAGAAGGAGAGTT
TGGCCAAGCATGAGTTGGGCGCCGATGGCTTTATGGTTATCAGTGACGAG
GAGAGTAAGGCAAAGTCCTTGCGGACGCTGGACTTCATCATAGATACCGT
GAGTGCGCAACATAAACTGCAGGATTACCTGCCGTTCTTGAAGACGAATG
GGACATACATCTTGGTCGGGATCCCGGCAAAGCCTTATGACTTGCATGCG
GGGGATTTGTTGATGAGCAGGCTGAAGATCGGGGGGTCGATCGTGGGGGG
GATCAAGGAAACGCAAGACATGCTTCACTTTTGCGGACGGCACGGGATTG
TGAGCATGATCGAAAAGGTACCCGCGAGCTATGCGAACAAGGCCATGGCG
AGGCTGGAGAAAAACGACGTCAAGTTTCGTTTTGTCTTGGACATCGCCGA
AACCCTTTCTGAGACCTCACCTGAGGTGGAAAAGGCTTAGACGGGGTCGT
GATTAGGGCGAGAACTAAAGAAAGAGAGAATCGGAAAAGGCAAAGGACGG
CCAGATAAAAAAGGGACGAGAAAGAGTGGTTTATCCAAGGGTAGCAAGCG
GTATGATTGTCTCTCTATGGTTGCATCTGAGTGTATGTGGATGTGAGAAG
AGAGGAGGAGTTCCAGATGCGATAAAGAAGGAGGGCACAAAGAAGGTGAG
ATGAAAAGAAGCACACATCGGGAGGGATTAGGGAGGAGGCATGTGGTAAG
ATGTCTTACTAGTCGGCAGAAATCTCAAGAAAGGGAGGGAGTGGTAAAGT
GACAGGTCAGAAAGGAAAAAAGAGGAGAAACAAAAAGGCCGTGCCACGCG
GATGACGGAGTGAAGAAAACACAACAGAATAAAAAATAAAATAG back to topprotein sequence of jgi.p|Nanoce1779_2|572919 >mRNA_1628-protein ID=mRNA_1628-protein|Name=jgi.p|Nanoce1779_2|572919|organism=Nannochloropsis oceanica|type=polypeptide|length=369bp
MPSAASSKCLAIAAQDESGVLAKFEIERRTLGPRDVKVSIKYCGMCHSDL
HQIRGEWGDSKYPMVPGHEIVGLVEAVGEQVTSFTVGNKVGVGVFVDSCR
NCANCRLGDEQYCTGNADVPSATFTYNFKLPDGTLVQGGYSNTIVVDEGY
VLHIPENLPLDAAAPLLCAGITVWSPFVHYGVRSHHAVGVVGLGGLGHMA
VKFAVAMGCKVVVISTSPKKESLAKHELGADGFMVISDEESKAKSLRTLD
FIIDTVSAQHKLQDYLPFLKTNGTYILVGIPAKPYDLHAGDLLMSRLKIG
GSIVGGIKETQDMLHFCGRHGIVSMIEKVPASYANKAMARLEKNDVKFRF
VLDIAETLSETSPEVEKA* back to topmRNA from alignment at scaffold_1:1111040..1113132+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1628 ID=mRNA_1628|Name=jgi.p|Nanoce1779_2|572919|organism=Nannochloropsis oceanica|type=mRNA|length=2093bp|location=Sequence derived from alignment at scaffold_1:1111040..1113132+ (Nannochloropsis oceanica)
AGCAATAGCACCGAACACTAACCGCCAACAACCATGCCGTCCGCTGCTTC
AAGCAAATGTCTCGCCATCGCCGCCCAGGACGAAAGTGGCGTCCTTGCCA
AGTTTGAGATCGAACGACGCACTCTCGGGCCCAGAGACGTGAAAGTATCT
ATCAAGTATTGCGGGATGTGCCACAGCGACTTGCACCAGATACGAGGCGA
ATGGGGCGATAGCAAGTACCCCATGGTACGGTTCTCTCTTTCTCCATCCC
TTCCTCCTTCCCTTCCTTTGTCTCCGCCCTCCACCTGAGTTTTTCATAAT
CCCCTTTCCTTACTCATGGGCAAAACTTGGTGAGAATTCCGCTATTGTCT
GCTTGTAGATTTCATCGATATTTGCTTTCGCTTCCCCCCCTCTCTTCGTC
CCTTGTTCTCCTCCTCCCAGGTCCCCGGCCACGAGATCGTCGGTCTGGTC
GAGGCCGTGGGGGAGCAGGTAACATCCTTCACAGTCGGAAACAAGGTAGG
GGTCGGCGTCTTCGTCGACTCCTGCCGTAACTGTGCCAATTGTCGCTTGG
GAGATGAGCAGTATTGCACCGGGAACGCCGACGTGCCAAGCGCGACTTTT
ACCTATAACTTCAAGCTGCCGGATGGGACTCTTGTGCAGGTAGGGATGGA
GGGATAGAGGGATGGAGAGAGGGCGTATGAGAGTACGGGCTCGGGATACA
GCAGTACCTGCTTCTTCCTTCAAATTGAACAAAGGCTGTCCTTTCCCACT
TTTTCTCCCTCCCTGCTTCCCTCCCACGCTTTCTCCCGCCTATGTTCCTA
TATCCCGCTAGGGTGGCTATTCCAACACCATTGTGGTGGACGAAGGGTAC
GTGCTGCACATCCCCGAGAACCTTCCACTTGATGCTGCTGCCCCTTTGCT
TTGTGCGGGCATCACTGTCTGGTCCCCGTTTGTGCATTACGGCGTAAGGA
GCCACCATGCTGTCGGTGTGGTCGGTTTGGGGGGTTTGGGCCACATGGCC
GTTAAATTTGCGGTTGCGATGGGGTGTAAGGTTGTTGTCATCTCGACAAG
CCCGAAGAAGGAGAGTTTGGCCAAGCATGAGTTGGGCGCCGATGGCTTTA
TGGTTATCAGTGACGAGGAGAGTAAGGCAAAGTCCTTGCGGACGCTGGAC
TTCATCATAGATACCGTGAGTGCGCAACATAAACTGCAGGATTACCTGCC
GTTCTTGAAGACGAATGGGACATACATCTTGGTCGGGATCCCGGCAAAGC
CTTATGACTTGCATGCGGGGGATTTGTTGATGAGCAGGCTGAAGATCGGG
GGGTCGATCGTGGGGGGGATCAAGGAAACGCAAGACATGCTTCACTTTTG
CGGACGGCACGGGATTGTGAGCATGATCGAAAAGGTACCCGCGAGCTATG
CGAACAAGGCCATGGCGAGGCTGGAGAAAAACGACGTCAAGTTTCGTTTT
GTCTGTAAGTTGTAGGGTTCCTATTTTTGTTCGCCCTTTTTCCCTTCACT
CTCTGACCTCTTATTCTCCTCTTTTATTCTCCCCATCGCCGAGTTTTTAA
TCAACCATGACTGATCTGCTCACCTGCCTTCTCTCTCCTTCTACCATTTC
TCCCTCCATCCATTCTGTCTTTCTCTACACATGCAGTGGACATCGCCGAA
ACCCTTTCTGAGACCTCACCTGAGGTGGAAAAGGCTTAGACGGGGTCGTG
ATTAGGGCGAGAACTAAAGAAAGAGAGAATCGGAAAAGGCAAAGGACGGC
CAGATAAAAAAGGGACGAGAAAGAGTGGTTTATCCAAGGGTAGCAAGCGG
TATGATTGTCTCTCTATGGTTGCATCTGAGTGTATGTGGATGTGAGAAGA
GAGGAGGAGTTCCAGATGCGATAAAGAAGGAGGGCACAAAGAAGGTGAGA
TGAAAAGAAGCACACATCGGGAGGGATTAGGGAGGAGGCATGTGGTAAGA
TGTCTTACTAGTCGGCAGAAATCTCAAGAAAGGGAGGGAGTGGTAAAGTG
ACAGGTCAGAAAGGAAAAAAGAGGAGAAACAAAAAGGCCGTGCCACGCGG
ATGACGGAGTGAAGAAAACACAACAGAATAAAAAATAAAATAG back to topCoding sequence (CDS) from alignment at scaffold_1:1111040..1113132+ >mRNA_1628 ID=mRNA_1628|Name=jgi.p|Nanoce1779_2|572919|organism=Nannochloropsis oceanica|type=CDS|length=4428bp|location=Sequence derived from alignment at scaffold_1:1111040..1113132+ (Nannochloropsis oceanica)
ATGCCGTCCGCTGCTTCAAGCAAATGTCTCGCCATCGCCGCCCAGGACGA
AAGTGGCGTCCTTGCCAAGTTTGAGATCGAACGACGCACTCTCGGGCCCA
GAGACGTGAAAGTATCTATCAAGTATTGCGGGATGTGCCACAGCGACTTG
CACCAGATACGAGGCGAATGGGGCGATAGCAAGTACCCCATGGTCCCCGG
CCACGAGATCGTCGGTCTGGTCGAGGCCGTGGGGGAGCAGGTAACATCCT
TCACAGTCGGAAACAAGGTAGGGGTCGGCGTCTTCGTCGACTCCTGCCGT
AACTGTGCCAATTGTCGCTTGGGAGATGAGCAGTATTGCACCGGGAACGC
CGACGTGCCAAGCGCGACTTTTACCTATAACTTCAAGCTGCCGGATGGGA
CTCTTGTGCAGGGTGGCTATTCCAACACCATTGTGGTGGACGAAGGGTAC
GTGCTGCACATCCCCGAGAACCTTCCACTTGATGCTGCTGCCCCTTTGCT
TTGTGCGGGCATCACTGTCTGGTCCCCGTTTGTGCATTACGGCGTAAGGA
GCCACCATGCTGTCGGTGTGGTCGGTTTGGGGGGTTTGGGCCACATGGCC
GTTAAATTTGCGGTTGCGATGGGGTGTAAGGTTGTTGTCATCTCGACAAG
CCCGAAGAAGGAGAGTTTGGCCAAGCATGAGTTGGGCGCCGATGGCTTTA
TGGTTATCAGTGACGAGGAGAGTAAGGCAAAGTCCTTGCGGACGCTGGAC
TTCATCATAGATACCGTGAGTGCGCAACATAAACTGCAGGATTACCTGCC
GTTCTTGAAGACGAATGGGACATACATCTTGGTCGGGATCCCGGCAAAGC
CTTATGACTTGCATGCGGGGGATTTGTTGATGAGCAGGCTGAAGATCGGG
GGGTCGATCGTGGGGGGGATCAAGGAAACGCAAGACATGCTTCACTTTTG
CGGACGGCACGGGATTGTGAGCATGATCGAAAAGGTACCCGCGAGCTATG
CGAACAAGGCCATGGCGAGGCTGGAGAAAAACGACGTCAAGTTTCGTTTT
GTCTTGGACATCGCCGAAACCCTTTCTGAGACCTCACCTGAGGTGGAAAA
GGCTTAGATGCCGTCCGCTGCTTCAAGCAAATGTCTCGCCATCGCCGCCC
AGGACGAAAGTGGCGTCCTTGCCAAGTTTGAGATCGAACGACGCACTCTC
GGGCCCAGAGACGTGAAAGTATCTATCAAGTATTGCGGGATGTGCCACAG
CGACTTGCACCAGATACGAGGCGAATGGGGCGATAGCAAGTACCCCATGG
TCCCCGGCCACGAGATCGTCGGTCTGGTCGAGGCCGTGGGGGAGCAGGTA
ACATCCTTCACAGTCGGAAACAAGGTAGGGGTCGGCGTCTTCGTCGACTC
CTGCCGTAACTGTGCCAATTGTCGCTTGGGAGATGAGCAGTATTGCACCG
GGAACGCCGACGTGCCAAGCGCGACTTTTACCTATAACTTCAAGCTGCCG
GATGGGACTCTTGTGCAGGGTGGCTATTCCAACACCATTGTGGTGGACGA
AGGGTACGTGCTGCACATCCCCGAGAACCTTCCACTTGATGCTGCTGCCC
CTTTGCTTTGTGCGGGCATCACTGTCTGGTCCCCGTTTGTGCATTACGGC
GTAAGGAGCCACCATGCTGTCGGTGTGGTCGGTTTGGGGGGTTTGGGCCA
CATGGCCGTTAAATTTGCGGTTGCGATGGGGTGTAAGGTTGTTGTCATCT
CGACAAGCCCGAAGAAGGAGAGTTTGGCCAAGCATGAGTTGGGCGCCGAT
GGCTTTATGGTTATCAGTGACGAGGAGAGTAAGGCAAAGTCCTTGCGGAC
GCTGGACTTCATCATAGATACCGTGAGTGCGCAACATAAACTGCAGGATT
ACCTGCCGTTCTTGAAGACGAATGGGACATACATCTTGGTCGGGATCCCG
GCAAAGCCTTATGACTTGCATGCGGGGGATTTGTTGATGAGCAGGCTGAA
GATCGGGGGGTCGATCGTGGGGGGGATCAAGGAAACGCAAGACATGCTTC
ACTTTTGCGGACGGCACGGGATTGTGAGCATGATCGAAAAGGTACCCGCG
AGCTATGCGAACAAGGCCATGGCGAGGCTGGAGAAAAACGACGTCAAGTT
TCGTTTTGTCTTGGACATCGCCGAAACCCTTTCTGAGACCTCACCTGAGG
TGGAAAAGGCTTAGATGCCGTCCGCTGCTTCAAGCAAATGTCTCGCCATC
GCCGCCCAGGACGAAAGTGGCGTCCTTGCCAAGTTTGAGATCGAACGACG
CACTCTCGGGCCCAGAGACGTGAAAGTATCTATCAAGTATTGCGGGATGT
GCCACAGCGACTTGCACCAGATACGAGGCGAATGGGGCGATAGCAAGTAC
CCCATGGTCCCCGGCCACGAGATCGTCGGTCTGGTCGAGGCCGTGGGGGA
GCAGGTAACATCCTTCACAGTCGGAAACAAGGTAGGGGTCGGCGTCTTCG
TCGACTCCTGCCGTAACTGTGCCAATTGTCGCTTGGGAGATGAGCAGTAT
TGCACCGGGAACGCCGACGTGCCAAGCGCGACTTTTACCTATAACTTCAA
GCTGCCGGATGGGACTCTTGTGCAGGGTGGCTATTCCAACACCATTGTGG
TGGACGAAGGGTACGTGCTGCACATCCCCGAGAACCTTCCACTTGATGCT
GCTGCCCCTTTGCTTTGTGCGGGCATCACTGTCTGGTCCCCGTTTGTGCA
TTACGGCGTAAGGAGCCACCATGCTGTCGGTGTGGTCGGTTTGGGGGGTT
TGGGCCACATGGCCGTTAAATTTGCGGTTGCGATGGGGTGTAAGGTTGTT
GTCATCTCGACAAGCCCGAAGAAGGAGAGTTTGGCCAAGCATGAGTTGGG
CGCCGATGGCTTTATGGTTATCAGTGACGAGGAGAGTAAGGCAAAGTCCT
TGCGGACGCTGGACTTCATCATAGATACCGTGAGTGCGCAACATAAACTG
CAGGATTACCTGCCGTTCTTGAAGACGAATGGGACATACATCTTGGTCGG
GATCCCGGCAAAGCCTTATGACTTGCATGCGGGGGATTTGTTGATGAGCA
GGCTGAAGATCGGGGGGTCGATCGTGGGGGGGATCAAGGAAACGCAAGAC
ATGCTTCACTTTTGCGGACGGCACGGGATTGTGAGCATGATCGAAAAGGT
ACCCGCGAGCTATGCGAACAAGGCCATGGCGAGGCTGGAGAAAAACGACG
TCAAGTTTCGTTTTGTCTTGGACATCGCCGAAACCCTTTCTGAGACCTCA
CCTGAGGTGGAAAAGGCTTAGATGCCGTCCGCTGCTTCAAGCAAATGTCT
CGCCATCGCCGCCCAGGACGAAAGTGGCGTCCTTGCCAAGTTTGAGATCG
AACGACGCACTCTCGGGCCCAGAGACGTGAAAGTATCTATCAAGTATTGC
GGGATGTGCCACAGCGACTTGCACCAGATACGAGGCGAATGGGGCGATAG
CAAGTACCCCATGGTCCCCGGCCACGAGATCGTCGGTCTGGTCGAGGCCG
TGGGGGAGCAGGTAACATCCTTCACAGTCGGAAACAAGGTAGGGGTCGGC
GTCTTCGTCGACTCCTGCCGTAACTGTGCCAATTGTCGCTTGGGAGATGA
GCAGTATTGCACCGGGAACGCCGACGTGCCAAGCGCGACTTTTACCTATA
ACTTCAAGCTGCCGGATGGGACTCTTGTGCAGGGTGGCTATTCCAACACC
ATTGTGGTGGACGAAGGGTACGTGCTGCACATCCCCGAGAACCTTCCACT
TGATGCTGCTGCCCCTTTGCTTTGTGCGGGCATCACTGTCTGGTCCCCGT
TTGTGCATTACGGCGTAAGGAGCCACCATGCTGTCGGTGTGGTCGGTTTG
GGGGGTTTGGGCCACATGGCCGTTAAATTTGCGGTTGCGATGGGGTGTAA
GGTTGTTGTCATCTCGACAAGCCCGAAGAAGGAGAGTTTGGCCAAGCATG
AGTTGGGCGCCGATGGCTTTATGGTTATCAGTGACGAGGAGAGTAAGGCA
AAGTCCTTGCGGACGCTGGACTTCATCATAGATACCGTGAGTGCGCAACA
TAAACTGCAGGATTACCTGCCGTTCTTGAAGACGAATGGGACATACATCT
TGGTCGGGATCCCGGCAAAGCCTTATGACTTGCATGCGGGGGATTTGTTG
ATGAGCAGGCTGAAGATCGGGGGGTCGATCGTGGGGGGGATCAAGGAAAC
GCAAGACATGCTTCACTTTTGCGGACGGCACGGGATTGTGAGCATGATCG
AAAAGGTACCCGCGAGCTATGCGAACAAGGCCATGGCGAGGCTGGAGAAA
AACGACGTCAAGTTTCGTTTTGTCTTGGACATCGCCGAAACCCTTTCTGA
GACCTCACCTGAGGTGGAAAAGGCTTAG back to top
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