jgi.p|Nanoce1779_2|572912, mRNA_1625 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572912
Unique Name	mRNA_1625
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1957
Alignment location	scaffold_1:1099822..1101778 +

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Properties


Property Name	Value
TranscriptId	572998
Track	FilteredModels2
ProteinId	572912

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1099822..1101778 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572912	gene_1625	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572912	mRNA_1625-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1625	CDS_1625	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1099822..1101778+
coding sequence from alignment at scaffold_1:1099822..1101778+

mRNA sequence

>mRNA_1625 ID=mRNA_1625|Name=jgi.p|Nanoce1779_2|572912|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp
AGGCATCTTACGAGCTTTGGTACCTTACTTGGTGCCATGGCAGGCGATGG
CCGCAAGCGAGACAGCAAAGAGGCGGTAAGTTTTCCTCAGTCTAAAGGGG
GCCTTGCGGCACATGCCCGTCACCAACACGCCGATCCCCAGTTACCAACT
CACAGCGAGCTATCCAGCACCTCTTTTTTAATATACGGAGTTGGAGTCGG
GGCTCTTTTTGCATACATCAAGTCTATTGTCAAGCTGCAGGCAAGGCCGT
CATCGCCACCACCATCACCACTAGGGGCGTTTGCGGATTCCACGAAAGGA
AGACGACGACGTAGGAGGATTCGATACGAGCATGAGGGCTGGTACGACGC
TCAGCACCACGGCCGCGACGAGCTGCTTTTGGTATCTTTCTGTACTATTA
CGGATACAAGCACTACTCGTAGTAGAAGTAGTAGTTGTAGCAGCAGCAGC
GGTGGCCAGGAGGGGCCCTCTTGGTACCTCGGACGCGGCATCAGCGCGCC
TGACCGCCTGACCTGAGCAGCATAGAAGCCTTCCCCTCTAATGTAGGGGT
TGCCTAGCATTATGGCTGGTGGAGTATGGAGGGGCGGCCAAAATCTCATA
TGGGGCGTGTAATTATATTGTATCGCAGGAGCATCCTATCTGTTTTGAAA
GACGGCGGTGAGGTAGGAAACGATATGCGATATCGACACATGGACACCCA
AGCTGTCGCAGCACTTGAACCCCGCAAGCTGGCCTAGCAACGCTGAGTAC
GTCCAAGGGTACAAGGCCAAGGAAAAATCGATCTCGCATGCCTATAACCG
AGAGACGACCGTGAACGACGCGCAGCAACCGTTGCCCGATATCCGCTGTA
TGCAGACGGGACAGCGTGAGATCGAGGAGCAGCGAATACTCCAGGCAACA
ATCCAGGTGGATCATTGGCCACGTGTGATGGCAGCAGCGCCATCAGCGGG
AGGGGCAGCAACCATCGAGCCAATAAGGAGCAGCCGGTTCAGCATGCCCC
CTGCCGATTCGTAAACGCTTACGCGTATAGCAAGTACATGAGGTGGAAAG
CTTTGCAGGACTTTTATGACATGCTTGTCCACTATCAGTCCTCGGCTCGA
TTACGACATTTTGAGTTAGAGGAGCTGGCGGTTTATTTGGAGTCACATGG
CTTTGGAGGGAAATGCACGACGGTGGTGACGCGTGAGGCGTTTATTGTTG
CTTTTTTGGGTCGGTACGAAAGCCGATTGTTGCACTAGCACAACATGAAG
CCTGATGCCCTCATCTCCCTGTGTCGGAATTCTTCCGAGCGGCGCCCTGT
CTGCTTTGTGGTTGTGGTAGCCTTATTGATAGTCTTGGATAAGGTGAGTC
GTCCTGCGGGGGGCTTGCAAGAGCCTTGTCCTAGCGCGTGTAGGGCCGTG
GTAAGGCTTTTCCGTCTTAAGAGCGGCATCGCCCGCATTGGAACGTTATG
GAGAATAATATCCAAAGAGCACGGCTGTTTGTCATTTGCAGTCAGACTGC
ACACGAGGCGATGAAGATGGCCGCGTTGCTGCGTCGGAAGTTTTTGCCCT
ACTGCTATTGCGTCGCGGTCTGAAAAGAGCTCTCCTCCTGGACGGATACG
TCCCCTTTATCATCTTCCCGGTCCTCGCATTCTACAGTCTCTTCAAGCAG
TGAGGAAAGATGTCGGCCCAATCTTCTTCTACAACATTTGCGATTTCGTA
ATTCGTGAACATGACTTTGAAAAGATTGGCCATTAATCCCCGCGCAGTAG
GCCTCTTCCAAGAGCAGATGACAAGAGAGAAAATTCTGCGGTCGCTGGTG
CCCACGGTGGCCGCTACTTAGGACTAAATTGGCCGAGCGGTGCTGAGGAG
AAGTAGAGAGGGGAGGAGCAACAGAAGCTGTCAAATAAGGGCAAGGAGAA
GGAGGTATCTTCCCTAGAAAATTGAAAAATCGTATCGACAGAATTACTGA
ACGTAAC

protein sequence of jgi.p|Nanoce1779_2|572912

>mRNA_1625-protein ID=mRNA_1625-protein|Name=jgi.p|Nanoce1779_2|572912|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MAGDGRKRDSKEAVSFPQSKGGLAAHARHQHADPQLPTHSELSSTSFLIY
GVGVGALFAYIKSIVKLQARPSSPPPSPLGAFADSTKGRRRRRRIRYEHE
GWYDAQHHGRDELLLVSFCTITDTSTTRSRSSSCSSSSGGQEGPSWYLGR
GISAPDRLT*

mRNA from alignment at scaffold_1:1099822..1101778+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1625 ID=mRNA_1625|Name=jgi.p|Nanoce1779_2|572912|organism=Nannochloropsis oceanica|type=mRNA|length=1957bp|location=Sequence derived from alignment at scaffold_1:1099822..1101778+ (Nannochloropsis oceanica)
AGGCATCTTACGAGCTTTGGTACCTTACTTGGTGCCATGGCAGGCGATGG
CCGCAAGCGAGACAGCAAAGAGGCGGTAAGTTTTCCTCAGTCTAAAGGGG
GCCTTGCGGCACATGCCCGTCACCAACACGCCGATCCCCAGTTACCAACT
CACAGCGAGCTATCCAGCACCTCTTTTTTAATATACGGAGTTGGAGTCGG
GGCTCTTTTTGCATACATCAAGTCTATTGTCAAGCTGCAGGCAAGGCCGT
CATCGCCACCACCATCACCACTAGGGGCGTTTGCGGATTCCACGAAAGGA
AGACGACGACGTAGGAGGATTCGATACGAGCATGAGGGCTGGTACGACGC
TCAGCACCACGGCCGCGACGAGCTGCTTTTGGTATCTTTCTGTACTATTA
CGGATACAAGCACTACTCGTAGTAGAAGTAGTAGTTGTAGCAGCAGCAGC
GGTGGCCAGGAGGGGCCCTCTTGGTACCTCGGACGCGGCATCAGCGCGCC
TGACCGCCTGACCTGAGCAGCATAGAAGCCTTCCCCTCTAATGTAGGGGT
TGCCTAGCATTATGGCTGGTGGAGTATGGAGGGGCGGCCAAAATCTCATA
TGGGGCGTGTAATTATATTGTATCGCAGGAGCATCCTATCTGTTTTGAAA
GACGGCGGTGAGGTAGGAAACGATATGCGATATCGACACATGGACACCCA
AGCTGTCGCAGCACTTGAACCCCGCAAGCTGGCCTAGCAACGCTGAGTAC
GTCCAAGGGTACAAGGCCAAGGAAAAATCGATCTCGCATGCCTATAACCG
AGAGACGACCGTGAACGACGCGCAGCAACCGTTGCCCGATATCCGCTGTA
TGCAGACGGGACAGCGTGAGATCGAGGAGCAGCGAATACTCCAGGCAACA
ATCCAGGTGGATCATTGGCCACGTGTGATGGCAGCAGCGCCATCAGCGGG
AGGGGCAGCAACCATCGAGCCAATAAGGAGCAGCCGGTTCAGCATGCCCC
CTGCCGATTCGTAAACGCTTACGCGTATAGCAAGTACATGAGGTGGAAAG
CTTTGCAGGACTTTTATGACATGCTTGTCCACTATCAGTCCTCGGCTCGA
TTACGACATTTTGAGTTAGAGGAGCTGGCGGTTTATTTGGAGTCACATGG
CTTTGGAGGGAAATGCACGACGGTGGTGACGCGTGAGGCGTTTATTGTTG
CTTTTTTGGGTCGGTACGAAAGCCGATTGTTGCACTAGCACAACATGAAG
CCTGATGCCCTCATCTCCCTGTGTCGGAATTCTTCCGAGCGGCGCCCTGT
CTGCTTTGTGGTTGTGGTAGCCTTATTGATAGTCTTGGATAAGGTGAGTC
GTCCTGCGGGGGGCTTGCAAGAGCCTTGTCCTAGCGCGTGTAGGGCCGTG
GTAAGGCTTTTCCGTCTTAAGAGCGGCATCGCCCGCATTGGAACGTTATG
GAGAATAATATCCAAAGAGCACGGCTGTTTGTCATTTGCAGTCAGACTGC
ACACGAGGCGATGAAGATGGCCGCGTTGCTGCGTCGGAAGTTTTTGCCCT
ACTGCTATTGCGTCGCGGTCTGAAAAGAGCTCTCCTCCTGGACGGATACG
TCCCCTTTATCATCTTCCCGGTCCTCGCATTCTACAGTCTCTTCAAGCAG
TGAGGAAAGATGTCGGCCCAATCTTCTTCTACAACATTTGCGATTTCGTA
ATTCGTGAACATGACTTTGAAAAGATTGGCCATTAATCCCCGCGCAGTAG
GCCTCTTCCAAGAGCAGATGACAAGAGAGAAAATTCTGCGGTCGCTGGTG
CCCACGGTGGCCGCTACTTAGGACTAAATTGGCCGAGCGGTGCTGAGGAG
AAGTAGAGAGGGGAGGAGCAACAGAAGCTGTCAAATAAGGGCAAGGAGAA
GGAGGTATCTTCCCTAGAAAATTGAAAAATCGTATCGACAGAATTACTGA
ACGTAAC

Coding sequence (CDS) from alignment at scaffold_1:1099822..1101778+

>mRNA_1625 ID=mRNA_1625|Name=jgi.p|Nanoce1779_2|572912|organism=Nannochloropsis oceanica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_1:1099822..1101778+ (Nannochloropsis oceanica)
ATGGCAGGCGATGGCCGCAAGCGAGACAGCAAAGAGGCGGTAAGTTTTCC
TCAGTCTAAAGGGGGCCTTGCGGCACATGCCCGTCACCAACACGCCGATC
CCCAGTTACCAACTCACAGCGAGCTATCCAGCACCTCTTTTTTAATATAC
GGAGTTGGAGTCGGGGCTCTTTTTGCATACATCAAGTCTATTGTCAAGCT
GCAGGCAAGGCCGTCATCGCCACCACCATCACCACTAGGGGCGTTTGCGG
ATTCCACGAAAGGAAGACGACGACGTAGGAGGATTCGATACGAGCATGAG
GGCTGGTACGACGCTCAGCACCACGGCCGCGACGAGCTGCTTTTGGTATC
TTTCTGTACTATTACGGATACAAGCACTACTCGTAGTAGAAGTAGTAGTT
GTAGCAGCAGCAGCGGTGGCCAGGAGGGGCCCTCTTGGTACCTCGGACGC
GGCATCAGCGCGCCTGACCGCCTGACCTGA

Synonyms

Publications