jgi.p|Nanoce1779_2|535866, mRNA_1623 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|535866
Unique Name	mRNA_1623
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2241
Alignment location	scaffold_1:1095136..1097967 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	535952
Track	FilteredModels2
ProteinId	535866

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1095136..1097967 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535866	gene_1623	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535866	mRNA_1623-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1623	CDS_1623	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1095136..1097967+
coding sequence from alignment at scaffold_1:1095136..1097967+

mRNA sequence

>mRNA_1623 ID=mRNA_1623|Name=jgi.p|Nanoce1779_2|535866|organism=Nannochloropsis oceanica|type=mRNA|length=2241bp
CAGGCCTGCCAGCGTCTTCCTAGTTGCACGTAACCGAGAGCTCCAAGCAT
CGTCTTCGCTCGGGGGCGTACGTACGCCCTCCGTCCCTCCAGACTCTGCT
GCACTGTCATCCTTAGGCTCTCAAGCTCTTCATACACTATGGCTCAAGGA
ATGAACAAGCTGAGCAAGAAGGGTTTGGCCGCCCAAAAGGGAAAGAAGGC
GCACGCCAAGGCTAGCAGCAAACGGACTGCTGCTAAAAAAGGAAACCCGA
CACAACTCCCAAAGAATATCCAACGCCGGGGTATGGCATTGGAACAAGCT
CGCATTACCAAGGCCATAAATCAAAACGTCGAGCGAGTTTCTTCGGCCAG
AGCGCTCAAGGCAGGGGACACTTTCTCGATGAATGACGTCAAGAGCATCG
GCAAAGAGTTGAATCGGGATATCCGTCGAGAGGAGATGACGAGGAAGAAG
ACCCGGGTGGAGGAGAAGCTGGCAGAATTGCAGGCGAAGATAGATGCTTG
AGGTGATCAAGGGGAATATTATTTTTGTCTCATGTTTTACCGGTACGAGT
CCAAAATGGAAATATACTTGTTTCAATTGTTGTGTTTCTTTTCCTATATT
TTTTATTGCTCTTGGTGGCCATGTCTCTGAAGGAATATCTTCAGCATGAG
GAGATTGCGAGGACCTTATTACAACATCTCTACGTACGCTGACTGTTTTT
TCTTTTACGTCTGTTTACTTTTTTTTCTTCGCCGTCATCTTTCCTCCTTA
TTTTTGTTTCCACACCTTTGGCGACGGCGACTAAGCTATCGAAATCCCGT
CAGATTTATATCTCGGCGAGGTTGAGGAAGACGCAGACGACAGTGAGGTC
GAAGATGAGGATGAGGATGAGGGGGAAGACGTATCATCTCTGTCCAATGT
ACCCAGCGCAATGTCCTTCAGCGTTATCCTTACGCGCTCCCTAGGACTGA
TCGCCTTCGGATCACTTTTCACCAATATCTGGCAGAGTCTCGTGGCTGTC
ATGCTACCCGGACAACAGACTAATCGCGCTTTATCCGCATAAAGACAGAT
GAGGCATATCCCATAAATCGGGAGAAAATACGAGAGGAAAGAGATGATAA
CACTTGAGCTCCCAAGTAGGTTCCCCAGAAGAGAGATGCAAATCAGGGCT
AGAGATAGACAAAGTGTCCACCACTTGACCGTCAGACCTTTTGCGATAAG
CAAAGGGATGTGTTTGGGGGAGTTTTTCAAGAGCATACTCCCCATTATAA
AGGTTGCGAGGACACCTAGAAAAGCCATGGAATACATTCCAGCGAGCTCA
GTGACTTTGCCGTCCATGGCCACGATGAGTGCGATGCACAGAAGGAGAAA
GGTGAAGATGATATAGTGATTTGTGCCACGCCATCCATTTTTTCGGAGGA
AAACGCCGGGAAGACATTTGTCAAGGGACATTTGAAAGACGAGGCCATCA
AGTCCGACGAAGGCCGTGAGGACCGCTGATAAGGGAAGCAAGGTCGATAG
AGGGAGTGAAAGAATGGATGGTGAGAAGACTGAAGAGGGGGAGAGAGTTT
GAGAGAGAAATATGGCATGCTCAAGACGTTGAGTAGCTCAGCATACCTCC
ACTAAGGACACAAAAAGCCTCAAGCGACATCCAATCTGTAAACAACTGGG
CCATCGAGCTTCCCTCTCCGAATATCCACTCCCCTGACACCATGGCCATG
CGGCTCAAAACAGTATCACTGTTAGCATTGATCTCAGGGATTGGAAGGAT
GGAGATGGCAAGGAAGGAGAGAAGGGGATTGATGACTGTCACGCCAACCC
AGAGATTCCACAGACATTTGATGAATGTCTCGGAGTGGAGGTGTTCGATG
CATTGTGCCTAAGAGGCGGCAGGAAGAAAGAAAGCGAGGAAGGGTGAGAG
GGTGAGAGGGGAGGCAGAGAGATGTGTGAAAAAAAGGAAATTCGAGAGAT
AGGACACAAATATGACACAATCCAAAATATGGAAGTTTGACCATTGATAG
ACACAGACGTAAAAGCATGCTGCACATTTAAGCGATCCTTAAACGTAAAG
GTTTTCAAACCCCAAACAGCCACAATATTCAGCCATCCGCCCTCCGAACC
TCTAACTTACCGTCGTTTCATAACCACTCACACCCAACATCGCTGATGAG
AATCCCAAAAATAGTGCTATCCCTAACGAAGAAGACATCTCACTTCCCGC
CATCGTGATCTTCGGGTAAGGCTGGTCAATATTAAGCCACA

protein sequence of jgi.p|Nanoce1779_2|535866

>mRNA_1623-protein ID=mRNA_1623-protein|Name=jgi.p|Nanoce1779_2|535866|organism=Nannochloropsis oceanica|type=polypeptide|length=121bp
MAQGMNKLSKKGLAAQKGKKAHAKASSKRTAAKKGNPTQLPKNIQRRGMA
LEQARITKAINQNVERVSSARALKAGDTFSMNDVKSIGKELNRDIRREEM
TRKKTRVEEKLAELQAKIDA*

mRNA from alignment at scaffold_1:1095136..1097967+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1623 ID=mRNA_1623|Name=jgi.p|Nanoce1779_2|535866|organism=Nannochloropsis oceanica|type=mRNA|length=2832bp|location=Sequence derived from alignment at scaffold_1:1095136..1097967+ (Nannochloropsis oceanica)
CAGGCCTGCCAGCGTCTTCCTAGTTGCACGTAACCGAGAGCTCCAAGCAT
CGTCTTCGCTCGGGGGCGTACGTACGCCCTCCGTCCCTCCAGACTCTGCT
GCACTGTCATCCTTAGGCTCTCAAGGTACGAGCCAAGCGACATCACTGCG
TACATCACTGCGGTCCTCTGTGCTGATGCGCTTCATATCAGTGCAGTCAC
CGAGGTCCAAGTTGTCTACCTTCCGCAGCCGCCTTACATATCTTCACTTT
CACACTCCTTACACAGCTCTTCATACACTATGGCTCAAGGAATGAACAAG
CTGAGCAAGAAGGGTTTGGCCGCCCAAAAGGGAAAGAAGGCGCACGCCAA
GGCTAGCAGCAAACGGACTGCTGCTAAAAAAGGAAGTGAGTTGAGTTGGG
GTTGATTTCTGATTCTTTTTTGCGAATAATTTTACTTGACCTTTTTTTTA
GTGCATATACGGGAGGGCTGTTCATGGCAATTGTCGAAGCACGCCGACAA
CGGTTTGTGCAGAGAATGACACCTCTATGGTCAAGGCGCTAAGGTCTTCC
GCACATGAGCCATCCCGGGGCTTGTGCGGCTTTGACGCATGTATGCCCGT
CCCGGACCACGATAGTATCAGTCGGTAAACCCCCTGTCCCTGCGTGTCCC
TTTTTTTTGCTCCCCGCCTCCTTATTTCTTGCATGTGCTGATGATTGCTG
AAGGTTATGCGAGCGACAATACCACAGCTTGTTCTTGCTGGTGATGTCCT
CTCCTTTCTCCCGTGGCTCCACCCAACTCCCCCCTTCACACCCAACCTAC
CTCATCACCACCTCACATCTCCCTTACATTGCCAGACCCGACACAACTCC
CAAAGAATATCCAACGCCGGGGTATGGCATTGGAACAAGCTCGCATTACC
AAGGCCATAAATCAAAACGTCGAGCGAGTTTCTTCGGCCAGAGCGCTCAA
GGCAGGGGACACTTTCTCGATGAATGACGTCAAGAGCATCGGCAAAGAGT
TGAATCGGGATATCCGTCGAGAGGAGATGACGAGGAAGAAGACCCGGGTG
GAGGAGAAGCTGGCAGAATTGCAGGCGAAGATAGATGCTTGAGGTGATCA
AGGGGAATATTATTTTTGTCTCATGTTTTACCGGTACGAGTCCAAAATGG
AAATATACTTGTTTCAATTGTTGTGTTTCTTTTCCTATATTTTTTATTGC
TCTTGGTGGCCATGTCTCTGAAGGAATATCTTCAGCATGAGGAGATTGCG
AGGACCTTATTACAACATCTCTACGTACGCTGACTGTTTTTTCTTTTACG
TCTGTTTACTTTTTTTTCTTCGCCGTCATCTTTCCTCCTTATTTTTGTTT
CCACACCTTTGGCGACGGCGACTAAGCTATCGAAATCCCGTCAGATTTAT
ATCTCGGCGAGGTTGAGGAAGACGCAGACGACAGTGAGGTCGAAGATGAG
GATGAGGATGAGGGGGAAGACGTATCATCTCTGTCCAATGTACCCAGCGC
AATGTCCTTCAGCGTTATCCTTACGCGCTCCCTAGGACTGATCGCCTTCG
GATCACTTTTCACCAATATCTGGCAGAGTCTCGTGGCTGTCATGCTACCC
GGACAACAGACTAATCGCGCTTTATCCGCATAAAGACAGATGAGGCATAT
CCCATAAATCGGGAGAAAATACGAGAGGAAAGAGATGATAACACTTGAGC
TCCCAAGTAGGTTCCCCAGAAGAGAGATGCAAATCAGGGCTAGAGATAGA
CAAAGTGTCCACCACTTGACCGTCAGACCTTTTGCGATAAGCAAAGGGAT
GTGTTTGGGGGAGTTTTTCAAGAGCATACTCCCCATTATAAAGGTTGCGA
GGACACCTAGAAAAGCCATGGAATACATTCCAGCGAGCTCAGTGACTTTG
CCGTCCATGGCCACGATGAGTGCGATGCACAGAAGGAGAAAGGTGAAGAT
GATATAGTGATTTGTGCCACGCCATCCATTTTTTCGGAGGAAAACGCCGG
GAAGACATTTGTCAAGGGACATTTGAAAGACGAGGCCATCAAGTCCGACG
AAGGCCGTGAGGACCGCTGATAAGGGAAGCAAGGTCGATAGAGGGAGTGA
AAGAATGGATGGTGAGAAGACTGAAGAGGGGGAGAGAGTTTGAGAGAGAA
ATATGGCATGCTCAAGACGTTGAGTAGCTCAGCATACCTCCACTAAGGAC
ACAAAAAGCCTCAAGCGACATCCAATCTGTAAACAACTGGGCCATCGAGC
TTCCCTCTCCGAATATCCACTCCCCTGACACCATGGCCATGCGGCTCAAA
ACAGTATCACTGTTAGCATTGATCTCAGGGATTGGAAGGATGGAGATGGC
AAGGAAGGAGAGAAGGGGATTGATGACTGTCACGCCAACCCAGAGATTCC
ACAGACATTTGATGAATGTCTCGGAGTGGAGGTGTTCGATGCATTGTGCC
TAAGAGGCGGCAGGAAGAAAGAAAGCGAGGAAGGGTGAGAGGGTGAGAGG
GGAGGCAGAGAGATGTGTGAAAAAAAGGAAATTCGAGAGATAGGACACAA
ATATGACACAATCCAAAATATGGAAGTTTGACCATTGATAGACACAGACG
TAAAAGCATGCTGCACATTTAAGCGATCCTTAAACGTAAAGGTTTTCAAA
CCCCAAACAGCCACAATATTCAGCCATCCGCCCTCCGAACCTCTAACTTA
CCGTCGTTTCATAACCACTCACACCCAACATCGCTGATGAGAATCCCAAA
AATAGTGCTATCCCTAACGAAGAAGACATCTCACTTCCCGCCATCGTGAT
CTTCGGGTAAGGCTGGTCAATATTAAGCCACA

Coding sequence (CDS) from alignment at scaffold_1:1095136..1097967+

>mRNA_1623 ID=mRNA_1623|Name=jgi.p|Nanoce1779_2|535866|organism=Nannochloropsis oceanica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_1:1095136..1097967+ (Nannochloropsis oceanica)
ATGGCTCAAGGAATGAACAAGCTGAGCAAGAAGGGTTTGGCCGCCCAAAA
GGGAAAGAAGGCGCACGCCAAGGCTAGCAGCAAACGGACTGCTGCTAAAA
AAGGAAACCCGACACAACTCCCAAAGAATATCCAACGCCGGGGTATGGCA
TTGGAACAAGCTCGCATTACCAAGGCCATAAATCAAAACGTCGAGCGAGT
TTCTTCGGCCAGAGCGCTCAAGGCAGGGGACACTTTCTCGATGAATGACG
TCAAGAGCATCGGCAAAGAGTTGAATCGGGATATCCGTCGAGAGGAGATG
ACGAGGAAGAAGACCCGGGTGGAGGAGAAGCTGGCAGAATTGCAGGCGAA
GATAGATGCTTGAATGGCTCAAGGAATGAACAAGCTGAGCAAGAAGGGTT
TGGCCGCCCAAAAGGGAAAGAAGGCGCACGCCAAGGCTAGCAGCAAACGG
ACTGCTGCTAAAAAAGGAAACCCGACACAACTCCCAAAGAATATCCAACG
CCGGGGTATGGCATTGGAACAAGCTCGCATTACCAAGGCCATAAATCAAA
ACGTCGAGCGAGTTTCTTCGGCCAGAGCGCTCAAGGCAGGGGACACTTTC
TCGATGAATGACGTCAAGAGCATCGGCAAAGAGTTGAATCGGGATATCCG
TCGAGAGGAGATGACGAGGAAGAAGACCCGGGTGGAGGAGAAGCTGGCAG
AATTGCAGGCGAAGATAGATGCTTGA

Synonyms

Publications