jgi.p|Nanoce1779_2|572898, mRNA_1622 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572898
Unique Name	mRNA_1622
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2290
Alignment location	scaffold_1:1092414..1094703 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572984
Track	FilteredModels2
ProteinId	572898

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1092414..1094703 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572898	gene_1622	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572898	mRNA_1622-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1622	CDS_1622	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1092414..1094703+
coding sequence from alignment at scaffold_1:1092414..1094703+

mRNA sequence

>mRNA_1622 ID=mRNA_1622|Name=jgi.p|Nanoce1779_2|572898|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp
CCCCCCACCTCCGCCTGCCCCTCCTCCTCCCCCCCCCCAACTCTTCCTCT
TCTCCATCGCGCTCTTCACATCCACATTTTTGAATTTTACCTTATATTTC
ATCCAGTTCTTCTTCATCCTCTCCGCTCCCACATAAAACGTACTTCCAAC
GGGGTTGAAGGCCATGCAGTTGTCAAACACTCTCTCCGCGTCCTTATCGA
ATGCCTCAAAACTGGTATAGAATCCTCCGTGACCTCCCTCCTTTCCCGCC
TTGATTCTCTTTTTCATCGTCCCCAGGTCCATAGGGTGAGGGACAACGGC
TATGTAGGCCTGCTCTATGTCAGGCCACACTTCCCACACAGGCTTAGCGA
ACCATCGGGTGTCTGCATCGAGATTAATTAAATAATTCATCGAGTCCTCG
AGGGCGTTTTCGAGAGACGGGATTTTGGACCAAGCCTTCTCAGCAGCTGC
GGCTGAGAGGTTCCCGGGGAGTTTGAGGGTCAGGCCAATGCTGCTACTGC
TGCCGTTACCAGTAGTAGGATCAGTTGTGGGCATTTTAGTCTTCTTTTTT
CCCTTTGCCTTCGCTGTCACCCCTCCAGCTCCATTCCCTGCAGCCGCTAC
TCGCTTCTCCTGTGCCGCCGCGGTCGCTGAGTCACAAGTGGCAAGAATTG
CCTTTAGGTGCACCTGGACTTGAATCAAGCCCTTCCCTTCGACTGTTCCC
TCCTTCACCCACTCTTCCAGGGCACGTGCTAAGTGGGTGAGGCGCGTGAT
GATGGTGGCACGGCCTGACCGGGCTTGAGCGAGGGAGACTTGGAAGTCGG
AAAAGAGGGTGCAGAGGGTGGGGTCCCCCTTCGACGCGTACTCCTCTAGG
ACATAGCGATTGACGACTTGCTCGAGTTTGTCATTATCGTCAGTATTAAC
ACAGGACACGAGTTGGGCAATGGACGGGTTATCCTGCCTCCGTTTATTGG
TATTGACCCCCTTGCTGCTGCTACTGCTACTGCTGCTGTTACTGCTCCTA
TTGCTACTGCTGCTCAAGGAAAGCAACGCGACCACATCATGTGCCGGCAT
GACAACCGAGGCTCGATTCCCCAAATATGCATCCACCATACCCACCAACC
CCCTTCGAAACAACCCTGGATGCGCCTCCCACGCCTGTTGCTTCACTTTC
ATCGGCAGCCCCTCCAGAATCTGCGGACGCGCCGCCAGTCGGTCCAGAAA
TCGAGCCGGCACTCGTCGTAGTTTTACAATTATTCTCTCCGGGATTGACT
TCAGCTCCGCCATCGTCAAATACCCGAAGCTCTGTGCCAACAACTTCTCC
AGCTGTTGTTCATCCGTACACCTATCCACTCTCTCCTCCAAACGTGCCCG
GAGATCAGTAAATAAATTATGGTACACTTGCAATCGAGGGACACCCAGCA
CATCAAGCATCTGCAGTGCAGGCCCCGCTTCTGGAATGGACAATAGACCA
TTCTCCGCTTGAAAACGATGGATGAACGCGCGGGGGTCACCTTCCCGCAG
CCCTCTTTTGATAAGCGACCGGCCGGCGGCGTTTCCGACTGGGGGACCAC
GGATCTGCGTCAGCTCCTTGGGGCTGGTAGAAGGCAAGGTGCGGATGGAT
GACTTGGGGGTGTTTGTTATAAATGTTTTCCTCTTGAGGATTGGCTGTGT
GGAAAGTGCGGCAGGGGCTGGGCTGAGTGGAATTTCAGCAGCAGCTGCTG
ATGCTTTTGCTGCGGTCATTACGGATATAGGAGTGGAGGCAGTGTCGGAG
GGAGATGTTGTCTGGACTGCAGGGGTTGCTACCACTACTTCCATGCGCGT
GGAAGGGGTGGGTGATCGCAGAAGAGTAGCAGATGACGGAGGCTGAGGAA
GAGGAGATGGTGGGGCGTGCGCGGTTGTAACTGTTGCTCTATTTGTCGTC
CCTACAACTAGCTTGGGCTTTGCTGTGGCAGAGGAATTGAGGGCAACACC
CCATTTAAGCCGCACGGGTGCGCTTGTTTCACTAGCTGTAGCTTCAGGCA
CAAGGCTCTTCAAAGTGAGGGCTGGACCAACGCCTGGCGGCTTGCTTGCT
GTAATCGTCACGGGCGGGGCAATCAATTTAAGTTTCTTCCCTCCTGTTTC
TCCTCCGCCACCGCTGCCACCGCCACCTAGACTCAACTTCGGCAATGCCC
GTTTCTTGGTATCTCCATCGACAACACATTCGCTTCCGTCCATCGCACCT
GTGGTTTGTGTGGGTGACCCCTTTCGGAGTGTCGGCAGCACACGCTGCTT
TCCATCGACATGGACACGGTTGCCACTGTCTCCCCCCTCG

protein sequence of jgi.p|Nanoce1779_2|572898

>mRNA_1622-protein ID=mRNA_1622-protein|Name=jgi.p|Nanoce1779_2|572898|organism=Nannochloropsis oceanica|type=polypeptide|length=181bp
MDGLSCLRLLVLTPLLLLLLLLLLLLLLLLLLKESNATTSCAGMTTEARF
PKYASTIPTNPLRNNPGCASHACCFTFIGSPSRICGRAASRSRNRAGTRR
SFTIILSGIDFSSAIVKYPKLCANNFSSCCSSVHLSTLSSKRARRSVNKL
WYTCNRGTPSTSSICSAGPASGMDNRPFSA*

mRNA from alignment at scaffold_1:1092414..1094703+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1622 ID=mRNA_1622|Name=jgi.p|Nanoce1779_2|572898|organism=Nannochloropsis oceanica|type=mRNA|length=2290bp|location=Sequence derived from alignment at scaffold_1:1092414..1094703+ (Nannochloropsis oceanica)
CCCCCCACCTCCGCCTGCCCCTCCTCCTCCCCCCCCCCAACTCTTCCTCT
TCTCCATCGCGCTCTTCACATCCACATTTTTGAATTTTACCTTATATTTC
ATCCAGTTCTTCTTCATCCTCTCCGCTCCCACATAAAACGTACTTCCAAC
GGGGTTGAAGGCCATGCAGTTGTCAAACACTCTCTCCGCGTCCTTATCGA
ATGCCTCAAAACTGGTATAGAATCCTCCGTGACCTCCCTCCTTTCCCGCC
TTGATTCTCTTTTTCATCGTCCCCAGGTCCATAGGGTGAGGGACAACGGC
TATGTAGGCCTGCTCTATGTCAGGCCACACTTCCCACACAGGCTTAGCGA
ACCATCGGGTGTCTGCATCGAGATTAATTAAATAATTCATCGAGTCCTCG
AGGGCGTTTTCGAGAGACGGGATTTTGGACCAAGCCTTCTCAGCAGCTGC
GGCTGAGAGGTTCCCGGGGAGTTTGAGGGTCAGGCCAATGCTGCTACTGC
TGCCGTTACCAGTAGTAGGATCAGTTGTGGGCATTTTAGTCTTCTTTTTT
CCCTTTGCCTTCGCTGTCACCCCTCCAGCTCCATTCCCTGCAGCCGCTAC
TCGCTTCTCCTGTGCCGCCGCGGTCGCTGAGTCACAAGTGGCAAGAATTG
CCTTTAGGTGCACCTGGACTTGAATCAAGCCCTTCCCTTCGACTGTTCCC
TCCTTCACCCACTCTTCCAGGGCACGTGCTAAGTGGGTGAGGCGCGTGAT
GATGGTGGCACGGCCTGACCGGGCTTGAGCGAGGGAGACTTGGAAGTCGG
AAAAGAGGGTGCAGAGGGTGGGGTCCCCCTTCGACGCGTACTCCTCTAGG
ACATAGCGATTGACGACTTGCTCGAGTTTGTCATTATCGTCAGTATTAAC
ACAGGACACGAGTTGGGCAATGGACGGGTTATCCTGCCTCCGTTTATTGG
TATTGACCCCCTTGCTGCTGCTACTGCTACTGCTGCTGTTACTGCTCCTA
TTGCTACTGCTGCTCAAGGAAAGCAACGCGACCACATCATGTGCCGGCAT
GACAACCGAGGCTCGATTCCCCAAATATGCATCCACCATACCCACCAACC
CCCTTCGAAACAACCCTGGATGCGCCTCCCACGCCTGTTGCTTCACTTTC
ATCGGCAGCCCCTCCAGAATCTGCGGACGCGCCGCCAGTCGGTCCAGAAA
TCGAGCCGGCACTCGTCGTAGTTTTACAATTATTCTCTCCGGGATTGACT
TCAGCTCCGCCATCGTCAAATACCCGAAGCTCTGTGCCAACAACTTCTCC
AGCTGTTGTTCATCCGTACACCTATCCACTCTCTCCTCCAAACGTGCCCG
GAGATCAGTAAATAAATTATGGTACACTTGCAATCGAGGGACACCCAGCA
CATCAAGCATCTGCAGTGCAGGCCCCGCTTCTGGAATGGACAATAGACCA
TTCTCCGCTTGAAAACGATGGATGAACGCGCGGGGGTCACCTTCCCGCAG
CCCTCTTTTGATAAGCGACCGGCCGGCGGCGTTTCCGACTGGGGGACCAC
GGATCTGCGTCAGCTCCTTGGGGCTGGTAGAAGGCAAGGTGCGGATGGAT
GACTTGGGGGTGTTTGTTATAAATGTTTTCCTCTTGAGGATTGGCTGTGT
GGAAAGTGCGGCAGGGGCTGGGCTGAGTGGAATTTCAGCAGCAGCTGCTG
ATGCTTTTGCTGCGGTCATTACGGATATAGGAGTGGAGGCAGTGTCGGAG
GGAGATGTTGTCTGGACTGCAGGGGTTGCTACCACTACTTCCATGCGCGT
GGAAGGGGTGGGTGATCGCAGAAGAGTAGCAGATGACGGAGGCTGAGGAA
GAGGAGATGGTGGGGCGTGCGCGGTTGTAACTGTTGCTCTATTTGTCGTC
CCTACAACTAGCTTGGGCTTTGCTGTGGCAGAGGAATTGAGGGCAACACC
CCATTTAAGCCGCACGGGTGCGCTTGTTTCACTAGCTGTAGCTTCAGGCA
CAAGGCTCTTCAAAGTGAGGGCTGGACCAACGCCTGGCGGCTTGCTTGCT
GTAATCGTCACGGGCGGGGCAATCAATTTAAGTTTCTTCCCTCCTGTTTC
TCCTCCGCCACCGCTGCCACCGCCACCTAGACTCAACTTCGGCAATGCCC
GTTTCTTGGTATCTCCATCGACAACACATTCGCTTCCGTCCATCGCACCT
GTGGTTTGTGTGGGTGACCCCTTTCGGAGTGTCGGCAGCACACGCTGCTT
TCCATCGACATGGACACGGTTGCCACTGTCTCCCCCCTCG

Coding sequence (CDS) from alignment at scaffold_1:1092414..1094703+

>mRNA_1622 ID=mRNA_1622|Name=jgi.p|Nanoce1779_2|572898|organism=Nannochloropsis oceanica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_1:1092414..1094703+ (Nannochloropsis oceanica)
ATGGACGGGTTATCCTGCCTCCGTTTATTGGTATTGACCCCCTTGCTGCT
GCTACTGCTACTGCTGCTGTTACTGCTCCTATTGCTACTGCTGCTCAAGG
AAAGCAACGCGACCACATCATGTGCCGGCATGACAACCGAGGCTCGATTC
CCCAAATATGCATCCACCATACCCACCAACCCCCTTCGAAACAACCCTGG
ATGCGCCTCCCACGCCTGTTGCTTCACTTTCATCGGCAGCCCCTCCAGAA
TCTGCGGACGCGCCGCCAGTCGGTCCAGAAATCGAGCCGGCACTCGTCGT
AGTTTTACAATTATTCTCTCCGGGATTGACTTCAGCTCCGCCATCGTCAA
ATACCCGAAGCTCTGTGCCAACAACTTCTCCAGCTGTTGTTCATCCGTAC
ACCTATCCACTCTCTCCTCCAAACGTGCCCGGAGATCAGTAAATAAATTA
TGGTACACTTGCAATCGAGGGACACCCAGCACATCAAGCATCTGCAGTGC
AGGCCCCGCTTCTGGAATGGACAATAGACCATTCTCCGCTTGA

Synonyms

Publications