jgi.p|Nanoce1779_2|521975, mRNA_1621 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521975
Unique NamemRNA_1621
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length288
Alignment locationscaffold_1:1092516..1092803 -

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Properties
Property NameValue
TranscriptId522061
TrackFilteredModels2
ProteinId521975
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1092516..1092803 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521975gene_1621Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1621CDS_1621Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521975mRNA_1621-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1621 ID=mRNA_1621|Name=jgi.p|Nanoce1779_2|521975|organism=Nannochloropsis oceanica|type=mRNA|length=288bp
ATGAATTATTTAATTAATCTCGATGCAGACACCCGATGGTTCGCTAAGCC
TGTGTGGGAAGTGTGGCCTGACATAGAGCAGGCCTACATAGCCGTTGTCC
CTCACCCTATGGACCTGGGGACGATGAAAAAGAGAATCAAGGCGGGAAAG
GAGGGAGGTCACGGAGGATTCTATACCAGTTTTGAGGCATTCGATAAGGA
CGCGGAGAGAGTGTTTGACAACTGCATGGCCTTCAACCCCGTTGGAAGTA
CGTTTTATGTGGGAGCGGAGAGGATGAAGAAGAACTGG
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protein sequence of jgi.p|Nanoce1779_2|521975

>mRNA_1621-protein ID=mRNA_1621-protein|Name=jgi.p|Nanoce1779_2|521975|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MNYLINLDADTRWFAKPVWEVWPDIEQAYIAVVPHPMDLGTMKKRIKAGK
EGGHGGFYTSFEAFDKDAERVFDNCMAFNPVGSTFYVGAERMKKNW
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mRNA from alignment at scaffold_1:1092516..1092803-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1621 ID=mRNA_1621|Name=jgi.p|Nanoce1779_2|521975|organism=Nannochloropsis oceanica|type=mRNA|length=288bp|location=Sequence derived from alignment at scaffold_1:1092516..1092803- (Nannochloropsis oceanica)
ATGAATTATTTAATTAATCTCGATGCAGACACCCGATGGTTCGCTAAGCC
TGTGTGGGAAGTGTGGCCTGACATAGAGCAGGCCTACATAGCCGTTGTCC
CTCACCCTATGGACCTGGGGACGATGAAAAAGAGAATCAAGGCGGGAAAG
GAGGGAGGTCACGGAGGATTCTATACCAGTTTTGAGGCATTCGATAAGGA
CGCGGAGAGAGTGTTTGACAACTGCATGGCCTTCAACCCCGTTGGAAGTA
CGTTTTATGTGGGAGCGGAGAGGATGAAGAAGAACTGG
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Coding sequence (CDS) from alignment at scaffold_1:1092516..1092803-

>mRNA_1621 ID=mRNA_1621|Name=jgi.p|Nanoce1779_2|521975|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_1:1092516..1092803- (Nannochloropsis oceanica)
ATGAATTATTTAATTAATCTCGATGCAGACACCCGATGGTTCGCTAAGCC
TGTGTGGGAAGTGTGGCCTGACATAGAGCAGGCCTACATAGCCGTTGTCC
CTCACCCTATGGACCTGGGGACGATGAAAAAGAGAATCAAGGCGGGAAAG
GAGGGAGGTCACGGAGGATTCTATACCAGTTTTGAGGCATTCGATAAGGA
CGCGGAGAGAGTGTTTGACAACTGCATGGCCTTCAACCCCGTTGGAAGTA
CGTTTTATGTGGGAGCGGAGAGGATGAAGAAGAACTGG
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Synonyms
Publications