jgi.p|Nanoce1779_2|572896, mRNA_1620 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572896
Unique NamemRNA_1620
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1515
Alignment locationscaffold_1:1090832..1092346 -

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Properties
Property NameValue
TranscriptId572982
TrackFilteredModels2
ProteinId572896
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1090832..1092346 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572896gene_1620Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572896mRNA_1620-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1620CDS_1620Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1620 ID=mRNA_1620|Name=jgi.p|Nanoce1779_2|572896|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp
GAGGAGGGGGAGGAGGGAGGGATCCGACGGTGCCGCAACCATTGCAGGGA
CGGCCGAGGGTGGAAGGGCAGATGTGGGGGCAGGCACTAATGTTGTTGGC
TGACCCCTTCGTGTTGCATGTGTTGGGCAAGACAGTGAAGCAACAGCTGG
ACGAGGTGTATAAATCACATGGCCTCCCCAAGGATCACCCTCTCCTTCCC
TCCCTTCTTCAACTCCTCTTCCTGGGACTAGATGCCCGCCGACAACTAGT
ACTAGTGCTTCACAAGCACAAAACCCCCGGCCCTCCCGCCCCTCCCGCCA
CCCCTACTATGCTCTTGGCGAAGAAGGGAGGGAAGGCAGGCAATGTCGCC
CCGCGCCCCCCTAATCTTCCTCCAGGGTTTTCGATCCCTGACGCAAGAGT
TAGTCCGTTACTGGTCCGAGACAAGGATGGAGAGCTCGCGGCTGAGAATG
ATGTACAAGAAGCTGCTCGAACTGTTTTACCCAGCTTATTAGAAATATTT
GCGCATGTGAACCTAGCACAGAAATACGAGGGAACGACGGAGGGATGGGA
GGGGCAGCCGCATGACAAGGAGGAGGTACAGGAAAAGATGCTTGAGAGCG
TGGGGAGGTTATACCGATCGTGTAAAGCTAGGCAGCCTTCTCCGCTTTTG
TTGTGCATGGTAAGTCATTCATTGTGTCATAGCCTCGCGACTGCTGATGA
TGCAAGGACGACCCCTCTAGCCAAGACCCTGGCAGCACTGCTCGATCACT
TGAACCGGAAAAAGAGGAGTGAGATGCTGCTTGCAACACCCGACCCCCAG
GACCGGGGCCTGTGGATTTGTCTGGCGAGCGCCGGTTTGTTAAGAGTGCC
GAGAAAGAAGGCCAGGGTAACAGGAGCAGCACCAGCAGCAGTGGCAGCCA
AGGCGGCAGGTGGTGCTGCTGTCAATACTTCTGCAGCGACGACCACAGCC
TCGACGCGTCCTCCCTTGGATCACGAACTTCGCGATTTGTTATTATCTCT
GTTTGTGAAGCAGCTACCATTTATACCTGAGCCTTGTTCTTTGTCATTTT
GTCACGAGCAGGTTATGCGGTTGTTGTTGGGCTGGATGGCGCGAGGGGCG
TTTCTTAAGCCGAAGAGGAGGGATGGAGGAGGGGAGGCCGACGAGGAGAG
GGAGAAGAAAGAGGAGAATGCGGTGAAGCTGTGGGTTGGGGAAATTGTGC
AAGGAGTGGGCGGATCGAAGGCGGTAAGGGAGGCATGGGAAAAGGAAAGA
TTCCAACCCATGAGAAGGCACTATGAAAGATTGTTTGAGGCGGAGCCTTG
GGCAAAAGTGTTGGTATGGGGGGAGGAAAAGGAGGAGGCGAAGGAGGGAA
ACAGGTTGGTGACGAACAAGGAAGGAAGAAAGAAAAATTGTGGGGTGAAG
ATCGAGGGGGGAAGGGAGAGGAAGAGATAGCGAGAACATTAAATAGGTAG
GTATGACACGCTATGGCACAACCAGCTAGTGAACGCCAAAATACAGAAAT
GAGACTCGGAGAGCC
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protein sequence of jgi.p|Nanoce1779_2|572896

>mRNA_1620-protein ID=mRNA_1620-protein|Name=jgi.p|Nanoce1779_2|572896|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MWGQALMLLADPFVLHVLGKTVKQQLDEVYKSHGLPKDHPLLPSLLQLLF
LGLDARRQLVLVLHKHKTPGPPAPPATPTMLLAKKGGKAGNVAPRPPNLP
PGFSIPDARVSPLLVRDKDGELAAENDVQEAARTVLPSLLEIFAHVNLAQ
KYEGTTEGWEGQPHDKEEVQEKMLESVGRLYRSCKARQPSPLLLCMVSHS
LCHSLATADDARTTPLAKTLAALLDHLNRKKRSEMLLATPDPQDRGLWIC
LASAGLLRVPRKKARVTGAAPAAVAAKAAGGAAVNTSAATTTASTRPPLD
HELRDLLLSLFVKQLPFIPEPCSLSFCHEQVMRLLLGWMARGAFLKPKRR
DGGGEADEEREKKEENAVKLWVGEIVQGVGGSKAVREAWEKERFQPMRRH
YERLFEAEPWAKVLVWGEEKEEAKEGNRLVTNKEGRKKNCGVKIEGGRER
KR*
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mRNA from alignment at scaffold_1:1090832..1092346-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1620 ID=mRNA_1620|Name=jgi.p|Nanoce1779_2|572896|organism=Nannochloropsis oceanica|type=mRNA|length=1515bp|location=Sequence derived from alignment at scaffold_1:1090832..1092346- (Nannochloropsis oceanica)
GAGGAGGGGGAGGAGGGAGGGATCCGACGGTGCCGCAACCATTGCAGGGA
CGGCCGAGGGTGGAAGGGCAGATGTGGGGGCAGGCACTAATGTTGTTGGC
TGACCCCTTCGTGTTGCATGTGTTGGGCAAGACAGTGAAGCAACAGCTGG
ACGAGGTGTATAAATCACATGGCCTCCCCAAGGATCACCCTCTCCTTCCC
TCCCTTCTTCAACTCCTCTTCCTGGGACTAGATGCCCGCCGACAACTAGT
ACTAGTGCTTCACAAGCACAAAACCCCCGGCCCTCCCGCCCCTCCCGCCA
CCCCTACTATGCTCTTGGCGAAGAAGGGAGGGAAGGCAGGCAATGTCGCC
CCGCGCCCCCCTAATCTTCCTCCAGGGTTTTCGATCCCTGACGCAAGAGT
TAGTCCGTTACTGGTCCGAGACAAGGATGGAGAGCTCGCGGCTGAGAATG
ATGTACAAGAAGCTGCTCGAACTGTTTTACCCAGCTTATTAGAAATATTT
GCGCATGTGAACCTAGCACAGAAATACGAGGGAACGACGGAGGGATGGGA
GGGGCAGCCGCATGACAAGGAGGAGGTACAGGAAAAGATGCTTGAGAGCG
TGGGGAGGTTATACCGATCGTGTAAAGCTAGGCAGCCTTCTCCGCTTTTG
TTGTGCATGGTAAGTCATTCATTGTGTCATAGCCTCGCGACTGCTGATGA
TGCAAGGACGACCCCTCTAGCCAAGACCCTGGCAGCACTGCTCGATCACT
TGAACCGGAAAAAGAGGAGTGAGATGCTGCTTGCAACACCCGACCCCCAG
GACCGGGGCCTGTGGATTTGTCTGGCGAGCGCCGGTTTGTTAAGAGTGCC
GAGAAAGAAGGCCAGGGTAACAGGAGCAGCACCAGCAGCAGTGGCAGCCA
AGGCGGCAGGTGGTGCTGCTGTCAATACTTCTGCAGCGACGACCACAGCC
TCGACGCGTCCTCCCTTGGATCACGAACTTCGCGATTTGTTATTATCTCT
GTTTGTGAAGCAGCTACCATTTATACCTGAGCCTTGTTCTTTGTCATTTT
GTCACGAGCAGGTTATGCGGTTGTTGTTGGGCTGGATGGCGCGAGGGGCG
TTTCTTAAGCCGAAGAGGAGGGATGGAGGAGGGGAGGCCGACGAGGAGAG
GGAGAAGAAAGAGGAGAATGCGGTGAAGCTGTGGGTTGGGGAAATTGTGC
AAGGAGTGGGCGGATCGAAGGCGGTAAGGGAGGCATGGGAAAAGGAAAGA
TTCCAACCCATGAGAAGGCACTATGAAAGATTGTTTGAGGCGGAGCCTTG
GGCAAAAGTGTTGGTATGGGGGGAGGAAAAGGAGGAGGCGAAGGAGGGAA
ACAGGTTGGTGACGAACAAGGAAGGAAGAAAGAAAAATTGTGGGGTGAAG
ATCGAGGGGGGAAGGGAGAGGAAGAGATAGCGAGAACATTAAATAGGTAG
GTATGACACGCTATGGCACAACCAGCTAGTGAACGCCAAAATACAGAAAT
GAGACTCGGAGAGCC
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Coding sequence (CDS) from alignment at scaffold_1:1090832..1092346-

>mRNA_1620 ID=mRNA_1620|Name=jgi.p|Nanoce1779_2|572896|organism=Nannochloropsis oceanica|type=CDS|length=1359bp|location=Sequence derived from alignment at scaffold_1:1090832..1092346- (Nannochloropsis oceanica)
ATGTGGGGGCAGGCACTAATGTTGTTGGCTGACCCCTTCGTGTTGCATGT
GTTGGGCAAGACAGTGAAGCAACAGCTGGACGAGGTGTATAAATCACATG
GCCTCCCCAAGGATCACCCTCTCCTTCCCTCCCTTCTTCAACTCCTCTTC
CTGGGACTAGATGCCCGCCGACAACTAGTACTAGTGCTTCACAAGCACAA
AACCCCCGGCCCTCCCGCCCCTCCCGCCACCCCTACTATGCTCTTGGCGA
AGAAGGGAGGGAAGGCAGGCAATGTCGCCCCGCGCCCCCCTAATCTTCCT
CCAGGGTTTTCGATCCCTGACGCAAGAGTTAGTCCGTTACTGGTCCGAGA
CAAGGATGGAGAGCTCGCGGCTGAGAATGATGTACAAGAAGCTGCTCGAA
CTGTTTTACCCAGCTTATTAGAAATATTTGCGCATGTGAACCTAGCACAG
AAATACGAGGGAACGACGGAGGGATGGGAGGGGCAGCCGCATGACAAGGA
GGAGGTACAGGAAAAGATGCTTGAGAGCGTGGGGAGGTTATACCGATCGT
GTAAAGCTAGGCAGCCTTCTCCGCTTTTGTTGTGCATGGTAAGTCATTCA
TTGTGTCATAGCCTCGCGACTGCTGATGATGCAAGGACGACCCCTCTAGC
CAAGACCCTGGCAGCACTGCTCGATCACTTGAACCGGAAAAAGAGGAGTG
AGATGCTGCTTGCAACACCCGACCCCCAGGACCGGGGCCTGTGGATTTGT
CTGGCGAGCGCCGGTTTGTTAAGAGTGCCGAGAAAGAAGGCCAGGGTAAC
AGGAGCAGCACCAGCAGCAGTGGCAGCCAAGGCGGCAGGTGGTGCTGCTG
TCAATACTTCTGCAGCGACGACCACAGCCTCGACGCGTCCTCCCTTGGAT
CACGAACTTCGCGATTTGTTATTATCTCTGTTTGTGAAGCAGCTACCATT
TATACCTGAGCCTTGTTCTTTGTCATTTTGTCACGAGCAGGTTATGCGGT
TGTTGTTGGGCTGGATGGCGCGAGGGGCGTTTCTTAAGCCGAAGAGGAGG
GATGGAGGAGGGGAGGCCGACGAGGAGAGGGAGAAGAAAGAGGAGAATGC
GGTGAAGCTGTGGGTTGGGGAAATTGTGCAAGGAGTGGGCGGATCGAAGG
CGGTAAGGGAGGCATGGGAAAAGGAAAGATTCCAACCCATGAGAAGGCAC
TATGAAAGATTGTTTGAGGCGGAGCCTTGGGCAAAAGTGTTGGTATGGGG
GGAGGAAAAGGAGGAGGCGAAGGAGGGAAACAGGTTGGTGACGAACAAGG
AAGGAAGAAAGAAAAATTGTGGGGTGAAGATCGAGGGGGGAAGGGAGAGG
AAGAGATAG
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Synonyms
Publications