jgi.p|Nanoce1779_2|572894, mRNA_1619 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572894
Unique NamemRNA_1619
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1280
Alignment locationscaffold_1:1089543..1090822 +

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Properties
Property NameValue
TranscriptId572980
TrackFilteredModels2
ProteinId572894
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1089543..1090822 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572894gene_1619Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572894mRNA_1619-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1619CDS_1619Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1619 ID=mRNA_1619|Name=jgi.p|Nanoce1779_2|572894|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp
CCGCAACGGCTCGGATGACGTCTTGTGCGGCTCCGGTGCTACCACTGCGC
TTGTGTAAACACTTGTGTTTGCAATTGTCTGCGGATAAATTGCACGCGAT
AATGTTACGATAGTAGGAAACTACATAGAAAGAAATTACCCACTGCGCAG
ACACCTGTCTTAATGAGAAAGACAAAAAACGTTGTTCTCCGCACATTTCG
TAGCTCGACGTTTAAAAAAAATGCGGCGGAGATACACGTACAGTAGCACG
CCGTCTCCACCTCCCCACACCTCAGCCCCATCCACTCTACGACACCAACT
CCCACATATCACTACTTTACCGCACAACAGACAGGATGTTTCAGCTGGCC
ATTATCCGGGACTCAATCAAGGTGCCGCCAGCGTCCTTCAACCGGGACCA
GGTCGAGGTATGCACATTTCTTGTCCTCCATTCGTCCTTCAAGTCCCACC
TTGGACCCTCCCTCCCTCCCGCACACAACCCCTCACCATTCTCCCCCTTC
ATCATCCCTCCCCCCGACGCTAGGTTTTGACGGAGGAAGTAGACCGAAAA
TATGCGAATCGCATCGTGATGGACGTTGGCCTGGGTGTGTGCTTGTACGA
TTTTGTAGAGATCGGGGACGCCTATCTCTACCCCTCCGACGGGGCGGCGC
ACCACCGCGTGACATTCCGCTTAATGGTCTTCCGTCCATTCATTGGAGAG
GTGTTGGTAGGCCGCGTGGCGCAATGCAATGAAAATGGCATCAAAGTCAG
CTTGGGGTTCTTTGACGACATATTTGTGCCGTCGTACTTGCTCCAAACGC
CCTCGGAATTTGATCCCCGGGAGAATGTGTGGGTATGGACGTACAACAGC
GATGAGCCCGGCGAGCCCGCCGTGCGATACCCTATGGAAGTGGACGAAGC
CATTCGTTTTCGTGTCCGCTCCATAAATTTTGCGCATATCAAGCACAGTG
GTAGTAGTGGTAGTAGTGGGGCGGTGGGGGGGTTGGGAAGCGTGGCGACG
GGCCCTGTGGGCAGCATGGGCAATCCCACAAATCCCAAAGTAGAGATAGA
AGTGGGAGGGATGGTTGGATTGAGAAGGCCACGGAGTGATACCTTGACAG
GGGACGATGGCGCGGGTGGACCGGTGGCACCGATGCAGTTAATGGGGACG
ACGAATGAGGATGGGTTGGGGATGTTGGCGTGGTGGGGATAGAGAGAAAG
CAGAAACAGAGAGAAAAGGTTGTATTGTACATACACAGACGGAAAGCAAC
CGTCAAAACAAAGAAGTTCTAAAATGAAAC
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protein sequence of jgi.p|Nanoce1779_2|572894

>mRNA_1619-protein ID=mRNA_1619-protein|Name=jgi.p|Nanoce1779_2|572894|organism=Nannochloropsis oceanica|type=polypeptide|length=208bp
MDVGLGVCLYDFVEIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRV
AQCNENGIKVSLGFFDDIFVPSYLLQTPSEFDPRENVWVWTYNSDEPGEP
AVRYPMEVDEAIRFRVRSINFAHIKHSGSSGSSGAVGGLGSVATGPVGSM
GNPTNPKVEIEVGGMVGLRRPRSDTLTGDDGAGGPVAPMQLMGTTNEDGL
GMLAWWG*
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mRNA from alignment at scaffold_1:1089543..1090822+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1619 ID=mRNA_1619|Name=jgi.p|Nanoce1779_2|572894|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp|location=Sequence derived from alignment at scaffold_1:1089543..1090822+ (Nannochloropsis oceanica)
CCGCAACGGCTCGGATGACGTCTTGTGCGGCTCCGGTGCTACCACTGCGC
TTGTGTAAACACTTGTGTTTGCAATTGTCTGCGGATAAATTGCACGCGAT
AATGTTACGATAGTAGGAAACTACATAGAAAGAAATTACCCACTGCGCAG
ACACCTGTCTTAATGAGAAAGACAAAAAACGTTGTTCTCCGCACATTTCG
TAGCTCGACGTTTAAAAAAAATGCGGCGGAGATACACGTACAGTAGCACG
CCGTCTCCACCTCCCCACACCTCAGCCCCATCCACTCTACGACACCAACT
CCCACATATCACTACTTTACCGCACAACAGACAGGATGTTTCAGCTGGCC
ATTATCCGGGACTCAATCAAGGTGCCGCCAGCGTCCTTCAACCGGGACCA
GGTCGAGGTATGCACATTTCTTGTCCTCCATTCGTCCTTCAAGTCCCACC
TTGGACCCTCCCTCCCTCCCGCACACAACCCCTCACCATTCTCCCCCTTC
ATCATCCCTCCCCCCGACGCTAGGTTTTGACGGAGGAAGTAGACCGAAAA
TATGCGAATCGCATCGTGATGGACGTTGGCCTGGGTGTGTGCTTGTACGA
TTTTGTAGAGATCGGGGACGCCTATCTCTACCCCTCCGACGGGGCGGCGC
ACCACCGCGTGACATTCCGCTTAATGGTCTTCCGTCCATTCATTGGAGAG
GTGTTGGTAGGCCGCGTGGCGCAATGCAATGAAAATGGCATCAAAGTCAG
CTTGGGGTTCTTTGACGACATATTTGTGCCGTCGTACTTGCTCCAAACGC
CCTCGGAATTTGATCCCCGGGAGAATGTGTGGGTATGGACGTACAACAGC
GATGAGCCCGGCGAGCCCGCCGTGCGATACCCTATGGAAGTGGACGAAGC
CATTCGTTTTCGTGTCCGCTCCATAAATTTTGCGCATATCAAGCACAGTG
GTAGTAGTGGTAGTAGTGGGGCGGTGGGGGGGTTGGGAAGCGTGGCGACG
GGCCCTGTGGGCAGCATGGGCAATCCCACAAATCCCAAAGTAGAGATAGA
AGTGGGAGGGATGGTTGGATTGAGAAGGCCACGGAGTGATACCTTGACAG
GGGACGATGGCGCGGGTGGACCGGTGGCACCGATGCAGTTAATGGGGACG
ACGAATGAGGATGGGTTGGGGATGTTGGCGTGGTGGGGATAGAGAGAAAG
CAGAAACAGAGAGAAAAGGTTGTATTGTACATACACAGACGGAAAGCAAC
CGTCAAAACAAAGAAGTTCTAAAATGAAAC
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Coding sequence (CDS) from alignment at scaffold_1:1089543..1090822+

>mRNA_1619 ID=mRNA_1619|Name=jgi.p|Nanoce1779_2|572894|organism=Nannochloropsis oceanica|type=CDS|length=624bp|location=Sequence derived from alignment at scaffold_1:1089543..1090822+ (Nannochloropsis oceanica)
ATGGACGTTGGCCTGGGTGTGTGCTTGTACGATTTTGTAGAGATCGGGGA
CGCCTATCTCTACCCCTCCGACGGGGCGGCGCACCACCGCGTGACATTCC
GCTTAATGGTCTTCCGTCCATTCATTGGAGAGGTGTTGGTAGGCCGCGTG
GCGCAATGCAATGAAAATGGCATCAAAGTCAGCTTGGGGTTCTTTGACGA
CATATTTGTGCCGTCGTACTTGCTCCAAACGCCCTCGGAATTTGATCCCC
GGGAGAATGTGTGGGTATGGACGTACAACAGCGATGAGCCCGGCGAGCCC
GCCGTGCGATACCCTATGGAAGTGGACGAAGCCATTCGTTTTCGTGTCCG
CTCCATAAATTTTGCGCATATCAAGCACAGTGGTAGTAGTGGTAGTAGTG
GGGCGGTGGGGGGGTTGGGAAGCGTGGCGACGGGCCCTGTGGGCAGCATG
GGCAATCCCACAAATCCCAAAGTAGAGATAGAAGTGGGAGGGATGGTTGG
ATTGAGAAGGCCACGGAGTGATACCTTGACAGGGGACGATGGCGCGGGTG
GACCGGTGGCACCGATGCAGTTAATGGGGACGACGAATGAGGATGGGTTG
GGGATGTTGGCGTGGTGGGGATAG
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Synonyms
Publications