jgi.p|Nanoce1779_2|622231, mRNA_1618 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622231
Unique Name	mRNA_1618
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1455
Alignment location	scaffold_1:1087745..1089341 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	622317
Track	FilteredModels2
ProteinId	622231

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1087745..1089341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622231	gene_1618	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622231	mRNA_1618-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1618	CDS_1618	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1087745..1089341+
coding sequence from alignment at scaffold_1:1087745..1089341+

mRNA sequence

>mRNA_1618 ID=mRNA_1618|Name=jgi.p|Nanoce1779_2|622231|organism=Nannochloropsis oceanica|type=mRNA|length=1455bp
ATGGGCATTAAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCCCCCGC
CTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGGCAAAA
CCTTAGCATATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAGAAGCA
CAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATTCTGGT
ACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGCACTGA
GTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATGATTTT
GGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTGGCGTC
GCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGCATGTATTTTTTTCGC
AGGTCACCAACGTGGTGGTGGATGAGATGGACACGATGCTCAAGGATGGG
TTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAGAGCAA
GCGCGATAAGATCCAATATTTAATGGCGACAGCCACATTGACTCCCGCTG
TCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTTTTTTG
CAGTCGGAGGATGCTCACAAGTCTCTTCCGACGATGAGGCATATCATGCT
TGATACCAAGGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGTCAGCC
AGAGCAGGCAGAACGGGGAGAGGGTCATGATATTCTGTAATACCGTGGCG
AGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCCTCCGT
GTGTTACCACGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCTCGAGA
AGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTGCGTCC
CGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGTTATGTTTGATTTTCC
CTTGAACCCCATCGAGTACTTGCACCGTTCTGGGCGCACAGCACGCATGG
GGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAGTTTTG
GCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGATGCGCT
CTCGGCACGGAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGGCCTGT
CGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCAAATAC
GTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGTGGAGG
GCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGGTTCAT
CCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGACAAAA
GAAGTCCTCCTCATCCTGGAAGAGGGCATTCAAAAATGGGTGCTGGTGAG
AGCTAAGGTAATGTCCACAGATGCCACGCTTATGGATCGCTCTCATCGCA
TATGA

protein sequence of jgi.p|Nanoce1779_2|622231

>mRNA_1618-protein ID=mRNA_1618-protein|Name=jgi.p|Nanoce1779_2|622231|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MGIKDPSVIQRIAIPPALKGEDIAFSAATGSGKTLAYLLPIMQRLKWQEA
QEGYARQSCRPRALILVPTRELVTQVVEVTKALSHVVKLSSCGLHGGDDF
GVQRRRLGGMVDVVVASPGRLLQHYEKGHVFFSQVTNVVVDEMDTMLKDG
FGPDLKRLMVPLETKSKRDKIQYLMATATLTPAVKKLMVDEGNFPKTRFL
QSEDAHKSLPTMRHIMLDTKGGDKVQLLLDVVSQSRQNGERVMIFCNTVA
SCRATEHALREVALSSVCYHGDMRSDERAAALEKFKTGEISFLVCTDIAS
RGLDMPFVEHVVMFDFPLNPIEYLHRSGRTARMGAKGKVTSLLTKRDKVL
ASAVQTAVAKGLPLDALSARKRDYESGGKLSGLSSGKVGSSSKGNKHTKY
VANGQKSASGRAGSSGGPSERGKRGPGRPSSGSSSYGPSRGGAGGGGGTK
EVLLILEEGIQKWVLVRAKVMSTDATLMDRSHRI*

mRNA from alignment at scaffold_1:1087745..1089341+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1618 ID=mRNA_1618|Name=jgi.p|Nanoce1779_2|622231|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_1:1087745..1089341+ (Nannochloropsis oceanica)
ATGGGCATTAAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCCCCCGC
CTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGGCAAAA
CCTTAGCATATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAGAAGCA
CAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATTCTGGT
ACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGCACTGA
GTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATGATTTT
GGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTGGCGTC
GCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGCATGTATTTTTTTCGC
AGGTCACCAACGTGGTGGTGGATGAGATGGACACGATGCTCAAGGATGGG
TTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAGAGCAA
GCGCGATAAGATCCAATATTTAATGGCGACAGCCACATTGACTCCCGCTG
TCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTTTTTTG
CAGTCGGAGGATGCTCACAAGTCTCTTCCGACGATGAGGCATATCATGCT
TGATACCAAGGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGTCAGCC
AGAGCAGGCAGAACGGGGAGAGGGTCATGATATTCTGTAATACCGTGGCG
AGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCCTCCGT
GTGTTACCACGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCTCGAGA
AGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTGCGTCC
CGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGTTATGTTTGATTTTCC
CTTGAACCCCATCGAGTACTTGCACCGTTCTGGGCGCACAGCACGCATGG
GGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAGTTTTG
GCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGATGCGCT
CTCGGCACGGAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGGCCTGT
CGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCAAATAC
GTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGTGGAGG
GCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGGTTCAT
CCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGGTAAGA
GGGCGGACGTCTGCAGGGGCAGGCGCACGTAGGCGGGGCAGTGATAGTGG
GGGCGGTGGGCGATAAATGTAGAGTGAAGCCGTATTTTTGCGTGTGTATG
TTATTACAAAGAATTAATGTGTTATTTACTTGAAAGACAAAAGAAGTCCT
CCTCATCCTGGAAGAGGGCATTCAAAAATGGGTGCTGGTGAGAGCTAAGG
TAATGTCCACAGATGCCACGCTTATGGATCGCTCTCATCGCATATGA

Coding sequence (CDS) from alignment at scaffold_1:1087745..1089341+

>mRNA_1618 ID=mRNA_1618|Name=jgi.p|Nanoce1779_2|622231|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_1:1087745..1089341+ (Nannochloropsis oceanica)
ATGGGCATTAAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCCCCCGC
CTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGGCAAAA
CCTTAGCATATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAGAAGCA
CAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATTCTGGT
ACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGCACTGA
GTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATGATTTT
GGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTGGCGTC
GCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGCATGTATTTTTTTCGC
AGGTCACCAACGTGGTGGTGGATGAGATGGACACGATGCTCAAGGATGGG
TTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAGAGCAA
GCGCGATAAGATCCAATATTTAATGGCGACAGCCACATTGACTCCCGCTG
TCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTTTTTTG
CAGTCGGAGGATGCTCACAAGTCTCTTCCGACGATGAGGCATATCATGCT
TGATACCAAGGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGTCAGCC
AGAGCAGGCAGAACGGGGAGAGGGTCATGATATTCTGTAATACCGTGGCG
AGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCCTCCGT
GTGTTACCACGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCTCGAGA
AGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTGCGTCC
CGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGTTATGTTTGATTTTCC
CTTGAACCCCATCGAGTACTTGCACCGTTCTGGGCGCACAGCACGCATGG
GGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAGTTTTG
GCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGATGCGCT
CTCGGCACGGAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGGCCTGT
CGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCAAATAC
GTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGTGGAGG
GCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGGTTCAT
CCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGACAAAA
GAAGTCCTCCTCATCCTGGAAGAGGGCATTCAAAAATGGGTGCTGGTGAG
AGCTAAGGTAATGTCCACAGATGCCACGCTTATGGATCGCTCTCATCGCA
TATGAATGGGCATTAAAGACCCCTCCGTTATCCAGCGGATCGCAATTCCC
CCCGCCTTGAAGGGGGAAGACATCGCCTTTTCAGCTGCTACCGGTTCTGG
CAAAACCTTAGCATATCTCTTACCTATTATGCAGCGGCTAAAGTGGCAAG
AAGCACAAGAAGGGTATGCACGGCAGTCCTGTCGACCGCGGGCGTTGATT
CTGGTACCGACCCGCGAGCTAGTCACTCAGGTGGTGGAGGTCACAAAGGC
ACTGAGTCACGTCGTCAAGTTGAGCTCGTGTGGGTTGCATGGAGGAGATG
ATTTTGGGGTGCAACGGCGGAGGTTGGGAGGGATGGTCGATGTAGTGGTG
GCGTCGCCAGGGAGGCTGCTGCAACACTATGAGAAGGGGCATGTATTTTT
TTCGCAGGTCACCAACGTGGTGGTGGATGAGATGGACACGATGCTCAAGG
ATGGGTTTGGACCCGATTTGAAGCGGCTAATGGTGCCTTTGGAAACAAAG
AGCAAGCGCGATAAGATCCAATATTTAATGGCGACAGCCACATTGACTCC
CGCTGTCAAGAAGCTGATGGTCGACGAGGGCAATTTCCCTAAAACGCGTT
TTTTGCAGTCGGAGGATGCTCACAAGTCTCTTCCGACGATGAGGCATATC
ATGCTTGATACCAAGGGCGGCGACAAAGTACAGCTCTTGCTGGATGTCGT
CAGCCAGAGCAGGCAGAACGGGGAGAGGGTCATGATATTCTGTAATACCG
TGGCGAGTTGCCGAGCGACGGAGCACGCCCTGCGTGAGGTGGCTTTGTCC
TCCGTGTGTTACCACGGAGACATGCGATCAGATGAGCGAGCGGCGGCGCT
CGAGAAGTTCAAGACGGGAGAGATTTCGTTTTTGGTCTGCACAGATATTG
CGTCCCGCGGGTTGGATATGCCGTTTGTGGAGCACGTTGTTATGTTTGAT
TTTCCCTTGAACCCCATCGAGTACTTGCACCGTTCTGGGCGCACAGCACG
CATGGGGGCCAAGGGGAAAGTGACTAGCTTGCTGACCAAGCGCGATAAAG
TTTTGGCCTCGGCGGTGCAGACGGCAGTGGCAAAAGGTCTGCCGTTAGAT
GCGCTCTCGGCACGGAAGCGGGATTATGAATCGGGCGGCAAGTTGTCGGG
CCTGTCGTCGGGCAAAGTAGGTTCGTCGAGCAAGGGCAACAAACACACCA
AATACGTGGCAAATGGGCAGAAAAGCGCCAGTGGTCGCGCAGGAAGCAGT
GGAGGGCCCTCAGAAAGGGGCAAGAGAGGGCCTGGGCGGCCGTCGTCGGG
TTCATCCTCGTACGGACCATCGAGAGGCGGTGCTGGCGGGGGAGGGGGGA
CAAAAGAAGTCCTCCTCATCCTGGAAGAGGGCATTCAAAAATGGGTGCTG
GTGAGAGCTAAGGTAATGTCCACAGATGCCACGCTTATGGATCGCTCTCA
TCGCATATGA

Synonyms

Publications