jgi.p|Nanoce1779_2|572886, mRNA_1617 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572886
Unique NamemRNA_1617
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1573
Alignment locationscaffold_1:1082703..1084451 -

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Properties
Property NameValue
TranscriptId572972
TrackFilteredModels2
ProteinId572886
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1082703..1084451 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572886gene_1617Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572886mRNA_1617-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1617CDS_1617Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1617 ID=mRNA_1617|Name=jgi.p|Nanoce1779_2|572886|organism=Nannochloropsis oceanica|type=mRNA|length=1573bp
GCAGCAGACTACACCAAGACCGAGAACGGCCTCTCCATTTTTTCCCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGGAGAAGAAGTTGG
GCTGGGCATGGGTGCCTATGCTTTACTTGCATCGGTATCTTCGTTTGTCC
CCGCTATATTTTTATATCTTGGCCATGTATTTGGAAGTGCAGAAGGTGGT
GAATTCGGGTCCTTACTGGGGGTTGTTGAAGCAGGACTATGACGAGTGCC
GGAAATGGTGGTGGAGCAATGCTCTCTATATCAACACCTTGGTTCCTTGG
AACGGCGTCATGGGGTGCTATCCAGTCGCGTGGTACATGAGCGTTGATTT
CCTTCTTTTCCTGCTTCTCCCCTTCCTTACCTTGGCGTTTGTGAAGAACA
AGACGGTTGGGTACGTGGTTCCGCTGGCCTTGTGGACAGCCAGCACGATT
TACGCCTATTGGCTGGGTCTGGTGAAAGGCGACAGTCAATTCATCTTTGG
GACGGAGGTTACAGAGATTACTGATTACCAGGTTGATTATTACTTCAAGG
CGTGGTCGAGGGCACCTGTATATTTGATTGGGGTGTTGTGTGCCTTTTTC
TGGTTGGATCATACGGCGGCTGTTGCTGATGTTGTGGCGAAACGGAGCCG
GGGCAATTGGTTCACGAACATCTTTGCGACGAATCGAAAGCAGCGGCTGA
CTTGGCCGATTGCTGGTTTGTTTTCGGTTGCGTTTGTGCTATTGTCCCTG
ACGTGTTATGGGGGACAGCCGGCTTACCATAAGCCACTTGCTCCGTTTTG
GGATTCGTCTTACTTGGCCTTGTCTCGGTCGGCCTGGTGTGTGGGCTTGA
TGTTATTGTGTTTCTTGCTTTTTCAAGGGTATGGTGGCCTGATTAAGGGA
TTGCTCGAAAATTCAGTGTGTGCGGTTTTGGGGAGGCTGACTTTTGCGTC
TTACCTATTGCATCCTGCAATCATTTTCTTAGTCTATGGTGATGCGATCG
TTCCCACTCATTGGTCGCCGATATGGGTGTCGTTTTCTTTTTTGGGGCTC
CTGACGACAGTTTTCCTTTTTGCCGCGGTGGGCTTTTTGTTGGTTGAGAA
GCCGTTTGCGAATTTGGAACGGGAGCTGATGGGGGGGATGGGGGCGGGAA
AGAAGAAGAATTGAGGTGGGACGGGTCATATGGTCTTGTCGAACTTCACG
CTGGTCTTGGAATCAGGGATTACACTGGAAAAAAGACAAGGAGAAAGAAG
ATACACGGCCGACTTGGGTCCAATTTTGTGTACACACACTTCACCATTGC
CGTATGGGATGGCGGTGATGGCAATAGCGAAATAGAACAGAAGAATTTTG
AGGATAAGAGGGTGGAGAGAAACAGCAAGATGTAAGGAGAAAGAAATTGA
AAAGTGAAGAGACGTTATATCGTGAGAAATTCAAAAGCGATGTCTAAAGG
TGCGCTCAACTGACAGAAGATAGACACAGTGATGCAGCATTGAACAGAAA
TCTTCAGAACCGGGGAAGAATTTCACCGAATGAAATAAGTTCATAAGAAC
GAACAAAAAATGTCTTTTTGGAA
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protein sequence of jgi.p|Nanoce1779_2|572886

>mRNA_1617-protein ID=mRNA_1617-protein|Name=jgi.p|Nanoce1779_2|572886|organism=Nannochloropsis oceanica|type=polypeptide|length=349bp
MLYLHRYLRLSPLYFYILAMYLEVQKVVNSGPYWGLLKQDYDECRKWWWS
NALYINTLVPWNGVMGCYPVAWYMSVDFLLFLLLPFLTLAFVKNKTVGYV
VPLALWTASTIYAYWLGLVKGDSQFIFGTEVTEITDYQVDYYFKAWSRAP
VYLIGVLCAFFWLDHTAAVADVVAKRSRGNWFTNIFATNRKQRLTWPIAG
LFSVAFVLLSLTCYGGQPAYHKPLAPFWDSSYLALSRSAWCVGLMLLCFL
LFQGYGGLIKGLLENSVCAVLGRLTFASYLLHPAIIFLVYGDAIVPTHWS
PIWVSFSFLGLLTTVFLFAAVGFLLVEKPFANLERELMGGMGAGKKKN*
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mRNA from alignment at scaffold_1:1082703..1084451-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1617 ID=mRNA_1617|Name=jgi.p|Nanoce1779_2|572886|organism=Nannochloropsis oceanica|type=mRNA|length=1749bp|location=Sequence derived from alignment at scaffold_1:1082703..1084451- (Nannochloropsis oceanica)
GCAGCAGACTACACCAAGACCGAGAACGGCCTCTCCATTTTTTCCCAACA
GCAGCAACAGCAGCAACAGCAGCAACAGCAGCAACAGGAGAAGAAGTTGG
GCTGGGCATGGGTGCCTATGCTTTACTTGCATCGGTATCTTCGTTTGTCC
CCGCTATATTTTTATATCTTGGCCATGTATTTGGAAGTGCAGAAGGTGGT
GAATTCGGGTCCTTACTGGGGGTTGTTGAAGCAGGACTATGACGAGGTGA
GGACAGAGAGTGGAAGGGGGTATGGAGCAAGGGCCGTGCCTGTGTCAGCT
GCACGTAACTCTTGTCTTCACCATTTTGATGATGAACGAGTAATTTAAGG
CCAGACTGCCAGTCGAGACTGCCTTCAAATACATTCAAATCCATTTCTTC
ATTCCCTCCCTCCCTCCCACAGTGCCGGAAATGGTGGTGGAGCAATGCTC
TCTATATCAACACCTTGGTTCCTTGGAACGGCGTCATGGGGTGCTATCCA
GTCGCGTGGTACATGAGCGTTGATTTCCTTCTTTTCCTGCTTCTCCCCTT
CCTTACCTTGGCGTTTGTGAAGAACAAGACGGTTGGGTACGTGGTTCCGC
TGGCCTTGTGGACAGCCAGCACGATTTACGCCTATTGGCTGGGTCTGGTG
AAAGGCGACAGTCAATTCATCTTTGGGACGGAGGTTACAGAGATTACTGA
TTACCAGGTTGATTATTACTTCAAGGCGTGGTCGAGGGCACCTGTATATT
TGATTGGGGTGTTGTGTGCCTTTTTCTGGTTGGATCATACGGCGGCTGTT
GCTGATGTTGTGGCGAAACGGAGCCGGGGCAATTGGTTCACGAACATCTT
TGCGACGAATCGAAAGCAGCGGCTGACTTGGCCGATTGCTGGTTTGTTTT
CGGTTGCGTTTGTGCTATTGTCCCTGACGTGTTATGGGGGACAGCCGGCT
TACCATAAGCCACTTGCTCCGTTTTGGGATTCGTCTTACTTGGCCTTGTC
TCGGTCGGCCTGGTGTGTGGGCTTGATGTTATTGTGTTTCTTGCTTTTTC
AAGGGTATGGTGGCCTGATTAAGGGATTGCTCGAAAATTCAGTGTGTGCG
GTTTTGGGGAGGCTGACTTTTGCGTCTTACCTATTGCATCCTGCAATCAT
TTTCTTAGTCTATGGTGATGCGATCGTTCCCACTCATTGGTCGCCGATAT
GGGTGTCGTTTTCTTTTTTGGGGCTCCTGACGACAGTTTTCCTTTTTGCC
GCGGTGGGCTTTTTGTTGGTTGAGAAGCCGTTTGCGAATTTGGAACGGGA
GCTGATGGGGGGGATGGGGGCGGGAAAGAAGAAGAATTGAGGTGGGACGG
GTCATATGGTCTTGTCGAACTTCACGCTGGTCTTGGAATCAGGGATTACA
CTGGAAAAAAGACAAGGAGAAAGAAGATACACGGCCGACTTGGGTCCAAT
TTTGTGTACACACACTTCACCATTGCCGTATGGGATGGCGGTGATGGCAA
TAGCGAAATAGAACAGAAGAATTTTGAGGATAAGAGGGTGGAGAGAAACA
GCAAGATGTAAGGAGAAAGAAATTGAAAAGTGAAGAGACGTTATATCGTG
AGAAATTCAAAAGCGATGTCTAAAGGTGCGCTCAACTGACAGAAGATAGA
CACAGTGATGCAGCATTGAACAGAAATCTTCAGAACCGGGGAAGAATTTC
ACCGAATGAAATAAGTTCATAAGAACGAACAAAAAATGTCTTTTTGGAA
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Coding sequence (CDS) from alignment at scaffold_1:1082703..1084451-

>mRNA_1617 ID=mRNA_1617|Name=jgi.p|Nanoce1779_2|572886|organism=Nannochloropsis oceanica|type=CDS|length=2094bp|location=Sequence derived from alignment at scaffold_1:1082703..1084451- (Nannochloropsis oceanica)
TGCCGGAAATGGTGGTGGAGCAATGCTCTCTATATCAACACCTTGGTTCC
TTGGAACGGCGTCATGGGGTGCTATCCAGTCGCGTGGTACATGAGCGTTG
ATTTCCTTCTTTTCCTGCTTCTCCCCTTCCTTACCTTGGCGTTTGTGAAG
AACAAGACGGTTGGGTACGTGGTTCCGCTGGCCTTGTGGACAGCCAGCAC
GATTTACGCCTATTGGCTGGGTCTGGTGAAAGGCGACAGTCAATTCATCT
TTGGGACGGAGGTTACAGAGATTACTGATTACCAGGTTGATTATTACTTC
AAGGCGTGGTCGAGGGCACCTGTATATTTGATTGGGGTGTTGTGTGCCTT
TTTCTGGTTGGATCATACGGCGGCTGTTGCTGATGTTGTGGCGAAACGGA
GCCGGGGCAATTGGTTCACGAACATCTTTGCGACGAATCGAAAGCAGCGG
CTGACTTGGCCGATTGCTGGTTTGTTTTCGGTTGCGTTTGTGCTATTGTC
CCTGACGTGTTATGGGGGACAGCCGGCTTACCATAAGCCACTTGCTCCGT
TTTGGGATTCGTCTTACTTGGCCTTGTCTCGGTCGGCCTGGTGTGTGGGC
TTGATGTTATTGTGTTTCTTGCTTTTTCAAGGGTATGGTGGCCTGATTAA
GGGATTGCTCGAAAATTCAGTGTGTGCGGTTTTGGGGAGGCTGACTTTTG
CGTCTTACCTATTGCATCCTGCAATCATTTTCTTAGTCTATGGTGATGCG
ATCGTTCCCACTCATTGGTCGCCGATATGGGTGTCGTTTTCTTTTTTGGG
GCTCCTGACGACAGTTTTCCTTTTTGCCGCGGTGGGCTTTTTGTTGGTTG
AGAAGCCGTTTGCGAATTTGGAACGGGAGCTGATGGGGGGGATGGGGGCG
GGAAAGAAGAAGAATTGAATGCTTTACTTGCATCGGTATCTTCGTTTGTC
CCCGCTATATTTTTATATCTTGGCCATGTATTTGGAAGTGCAGAAGGTGG
TGAATTCGGGTCCTTACTGGGGGTTGTTGAAGCAGGACTATGACGAGTGC
CGGAAATGGTGGTGGAGCAATGCTCTCTATATCAACACCTTGGTTCCTTG
GAACGGCGTCATGGGGTGCTATCCAGTCGCGTGGTACATGAGCGTTGATT
TCCTTCTTTTCCTGCTTCTCCCCTTCCTTACCTTGGCGTTTGTGAAGAAC
AAGACGGTTGGGTACGTGGTTCCGCTGGCCTTGTGGACAGCCAGCACGAT
TTACGCCTATTGGCTGGGTCTGGTGAAAGGCGACAGTCAATTCATCTTTG
GGACGGAGGTTACAGAGATTACTGATTACCAGGTTGATTATTACTTCAAG
GCGTGGTCGAGGGCACCTGTATATTTGATTGGGGTGTTGTGTGCCTTTTT
CTGGTTGGATCATACGGCGGCTGTTGCTGATGTTGTGGCGAAACGGAGCC
GGGGCAATTGGTTCACGAACATCTTTGCGACGAATCGAAAGCAGCGGCTG
ACTTGGCCGATTGCTGGTTTGTTTTCGGTTGCGTTTGTGCTATTGTCCCT
GACGTGTTATGGGGGACAGCCGGCTTACCATAAGCCACTTGCTCCGTTTT
GGGATTCGTCTTACTTGGCCTTGTCTCGGTCGGCCTGGTGTGTGGGCTTG
ATGTTATTGTGTTTCTTGCTTTTTCAAGGGTATGGTGGCCTGATTAAGGG
ATTGCTCGAAAATTCAGTGTGTGCGGTTTTGGGGAGGCTGACTTTTGCGT
CTTACCTATTGCATCCTGCAATCATTTTCTTAGTCTATGGTGATGCGATC
GTTCCCACTCATTGGTCGCCGATATGGGTGTCGTTTTCTTTTTTGGGGCT
CCTGACGACAGTTTTCCTTTTTGCCGCGGTGGGCTTTTTGTTGGTTGAGA
AGCCGTTTGCGAATTTGGAACGGGAGCTGATGGGGGGGATGGGGGCGGGA
AAGAAGAAGAATTGAATGCTTTACTTGCATCGGTATCTTCGTTTGTCCCC
GCTATATTTTTATATCTTGGCCATGTATTTGGAAGTGCAGAAGGTGGTGA
ATTCGGGTCCTTACTGGGGGTTGTTGAAGCAGGACTATGACGAG
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Synonyms
Publications