jgi.p|Nanoce1779_2|572885, mRNA_1616 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572885
Unique Name	mRNA_1616
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1601
Alignment location	scaffold_1:1081115..1082715 +

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Properties


Property Name	Value
TranscriptId	572971
Track	FilteredModels2
ProteinId	572885

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1081115..1082715 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572885	gene_1616	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572885	mRNA_1616-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1616	CDS_1616	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1081115..1082715+
coding sequence from alignment at scaffold_1:1081115..1082715+

mRNA sequence

>mRNA_1616 ID=mRNA_1616|Name=jgi.p|Nanoce1779_2|572885|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp
AGGCCGTCCACCCTTCATCAAGCCATCCCGAAGCTCACCATGTCGACCAT
GAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAAAGTGATCCATG
CCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGCAGGAGCAGAAG
CCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAGGCCAACTTTGA
GCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGTTGAAAAGGCTG
CTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACACCAGCCGTTGCT
GCCGCAACAACTGATAAAATGACGATGACCCCTGCAACCCTGTCGCCCTC
CACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAACACACCTGCCC
CTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCTATGCCAGCAGC
AGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGACGCGTTGGCCGT
TCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGTGCTGCAACTGC
CATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATGCCGCTGTTGTT
GTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCTAAGGAGGTGGC
AGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTCGGCGTCATTAA
CTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAGAGGCCGTGACA
ATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCCCTAGCGCTTGC
CAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAGCAGCAGCAGCA
GCGACACCACCACCACTATGACCACAGCGGCTGTCGCCCCTCACGCGGAG
GTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAATGCTACGCCGGA
AAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAATGGGTGAGTTGT
CCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTGCGGCAGAGAAC
GACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGTCCTAGCTCTAT
TATCTTTGGTTAGAGAGTGGCAATCTAAGGTGTGATTGTCGCGGTTGAAA
GTAAGGAGTGACTGAGAATTTGTGCGAATGTGGTTAAGAGGAGGGAATGG
AAAAGGAAGGAATGAGAAGAACGGAAGTGAATTAAGAGCGCGTCAAAACA
TCGCCAATAAACCAAAAGCAAAGCAGCAAGAGGAGACAAAGAGACGCAGA
GACAGAGAGAGAGACTGAAAGACGGAACACGAGAACTCAAGGTGGCAATA
GCTTTTATATCTGAGAAGCAGTGATACGAAGGCGAGGCCTTGCAAGTGTA
TGATGGTGAGTATATTAAATTTCTATTATTGGGTGGCAGAGATACTGAAA
AGAAAGCAGGGACGTGTAATCGATGCACATAGAAAGACATACGTGACAAC
ATCGCCCGTCGCCATTGAGGGTGGGGAGGAATGGAGTGTCGAATAACGCG
GAGACGATGATAAAGAGAGAAAGAAAGCAAAGTCAAAATTCCAAAAAGAC
A

protein sequence of jgi.p|Nanoce1779_2|572885

>mRNA_1616-protein ID=mRNA_1616-protein|Name=jgi.p|Nanoce1779_2|572885|organism=Nannochloropsis oceanica|type=polypeptide|length=358bp
MSTMNSTSMSVNRPTTKVIHAPGGASSISIFGEQEQKPAAGGSGAKPTFK
ANFEPSFEISAPAVPMVEKAALTPEPVVVVVETPAVAAATTDKMTMTPAT
LSPSTKTAATTTTSECNTPAPPTAIDAQAIGVVYASSSPLQRTLKTRTLD
ALAVRGVATATMEVGDVLQLPLAAKRMAATGTYAAVVVVAILTEDSNFAA
KEVAGAVTSGLVSVSTSASLTVVPGLIFAASEKEAVTMMEKKPEAWADSA
LALAKGGDSCIVTTISSSSSSDTTTTMTTAAVAPHAEVVPEACIVNTAAN
ATPEKETVATPSVTEQMGELSLGAKARARAAAFAAENDAPIRRPSHRGGG
PSSIIFG*

mRNA from alignment at scaffold_1:1081115..1082715+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1616 ID=mRNA_1616|Name=jgi.p|Nanoce1779_2|572885|organism=Nannochloropsis oceanica|type=mRNA|length=1601bp|location=Sequence derived from alignment at scaffold_1:1081115..1082715+ (Nannochloropsis oceanica)
AGGCCGTCCACCCTTCATCAAGCCATCCCGAAGCTCACCATGTCGACCAT
GAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAAAGTGATCCATG
CCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGCAGGAGCAGAAG
CCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAGGCCAACTTTGA
GCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGTTGAAAAGGCTG
CTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACACCAGCCGTTGCT
GCCGCAACAACTGATAAAATGACGATGACCCCTGCAACCCTGTCGCCCTC
CACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAACACACCTGCCC
CTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCTATGCCAGCAGC
AGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGACGCGTTGGCCGT
TCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGTGCTGCAACTGC
CATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATGCCGCTGTTGTT
GTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCTAAGGAGGTGGC
AGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTCGGCGTCATTAA
CTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAGAGGCCGTGACA
ATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCCCTAGCGCTTGC
CAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAGCAGCAGCAGCA
GCGACACCACCACCACTATGACCACAGCGGCTGTCGCCCCTCACGCGGAG
GTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAATGCTACGCCGGA
AAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAATGGGTGAGTTGT
CCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTGCGGCAGAGAAC
GACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGTCCTAGCTCTAT
TATCTTTGGTTAGAGAGTGGCAATCTAAGGTGTGATTGTCGCGGTTGAAA
GTAAGGAGTGACTGAGAATTTGTGCGAATGTGGTTAAGAGGAGGGAATGG
AAAAGGAAGGAATGAGAAGAACGGAAGTGAATTAAGAGCGCGTCAAAACA
TCGCCAATAAACCAAAAGCAAAGCAGCAAGAGGAGACAAAGAGACGCAGA
GACAGAGAGAGAGACTGAAAGACGGAACACGAGAACTCAAGGTGGCAATA
GCTTTTATATCTGAGAAGCAGTGATACGAAGGCGAGGCCTTGCAAGTGTA
TGATGGTGAGTATATTAAATTTCTATTATTGGGTGGCAGAGATACTGAAA
AGAAAGCAGGGACGTGTAATCGATGCACATAGAAAGACATACGTGACAAC
ATCGCCCGTCGCCATTGAGGGTGGGGAGGAATGGAGTGTCGAATAACGCG
GAGACGATGATAAAGAGAGAAAGAAAGCAAAGTCAAAATTCCAAAAAGAC
A

Coding sequence (CDS) from alignment at scaffold_1:1081115..1082715+

>mRNA_1616 ID=mRNA_1616|Name=jgi.p|Nanoce1779_2|572885|organism=Nannochloropsis oceanica|type=CDS|length=1074bp|location=Sequence derived from alignment at scaffold_1:1081115..1082715+ (Nannochloropsis oceanica)
ATGTCGACCATGAACAGCACCAGCATGAGCGTCAACCGCCCGACGACTAA
AGTGATCCATGCCCCCGGCGGTGCCTCTTCCATATCCATTTTCGGAGAGC
AGGAGCAGAAGCCCGCGGCCGGCGGGTCGGGAGCCAAGCCCACATTTAAG
GCCAACTTTGAGCCTTCCTTTGAGATTTCTGCCCCGGCTGTGCCCATGGT
TGAAAAGGCTGCTCTCACTCCTGAGCCTGTGGTGGTGGTGGTGGAGACAC
CAGCCGTTGCTGCCGCAACAACTGATAAAATGACGATGACCCCTGCAACC
CTGTCGCCCTCCACCAAGACGGCTGCCACGACCACCACGAGCGAATGCAA
CACACCTGCCCCTCCCACAGCAATTGACGCGCAAGCCATAGGCGTGGTCT
ATGCCAGCAGCAGCCCTCTACAAAGGACGCTCAAGACTCGTACCCTCGAC
GCGTTGGCCGTTCGTGGGGTCGCCACCGCCACTATGGAAGTGGGGGATGT
GCTGCAACTGCCATTGGCTGCGAAACGAATGGCCGCAACAGGAACCTATG
CCGCTGTTGTTGTTGTGGCGATACTGACCGAGGACAGCAACTTTGCTGCT
AAGGAGGTGGCAGGGGCTGTCACGAGTGGCTTGGTTTCAGTCTCGACCTC
GGCGTCATTAACTGTGGTGCCAGGTCTGATCTTCGCGGCATCTGAGAAAG
AGGCCGTGACAATGATGGAGAAGAAGCCGGAGGCTTGGGCGGACTCTGCC
CTAGCGCTTGCCAAGGGTGGGGACTCCTGCATTGTCACAACTATCAGCAG
CAGCAGCAGCAGCGACACCACCACCACTATGACCACAGCGGCTGTCGCCC
CTCACGCGGAGGTAGTGCCCGAGGCATGCATCGTCAACACTGCTGCCAAT
GCTACGCCGGAAAAGGAAACGGTGGCGACCCCGAGCGTAACAGAGCAAAT
GGGTGAGTTGTCCCTGGGTGCCAAGGCCCGGGCGCGGGCTGCTGCGTTTG
CGGCAGAGAACGACGCCCCTATCCGTCGTCCGTCTCACCGCGGTGGGGGT
CCTAGCTCTATTATCTTTGGTTAG

Synonyms

Publications