jgi.p|Nanoce1779_2|572881, mRNA_1614 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572881
Unique NamemRNA_1614
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length722
Alignment locationscaffold_1:1078716..1079437 -

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Properties
Property NameValue
TranscriptId572967
TrackFilteredModels2
ProteinId572881
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1078716..1079437 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572881gene_1614Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572881mRNA_1614-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1614CDS_1614Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1614 ID=mRNA_1614|Name=jgi.p|Nanoce1779_2|572881|organism=Nannochloropsis oceanica|type=mRNA|length=722bp
TTCTCGTTTTTGTCCTATTATTCGTTCTTTTCATCTTTTCTCTCGAATGG
ATTCGACGTGCGTGTGTGCTTTTAATTGCTTGTTAACTGATTCGTTTCTT
ACTTTCCATCCTCCTAATGCTCGTATCTCCGCTGCCCATACAGGGCTAGG
CTTCGATGCAACCCGCTTGATGGAATGTAGGCGTTATGACTGCTATTTGT
ACTTCGTCCATGCTCTTCCCCCTTCTCTCTTCTCCTACCCCTCTTCAGCT
CTCCCCCCCTTCCTTCCCATCTATTGATCGCTTGCTCCTCTCGTGTGTTC
GCAATTAACACTCTCTCAGCATGGCTTCGGCACGTACTCTTTTCCTCTCC
CTTTTCTTCCTCTCGCTTCCCTTCCTTCCCCTCGACACGAAAACATGCAC
ACAGACACACAGTCACGCAGATTCACACAGGCAGAGACAAAGGATCTTAT
CTATTATCTACTTACCTCTCACCGCTACGCCCCCCTCTTTCCTCCCTCCT
TGTCTACTCACAAACTGCCTTTCATTAAATCCGGGACTTTCCCCTTCTCC
GCCTCCCATCTATCCCTTTCCTTCCTTTCATGGATTTCTCGACAACATCT
CCAAGTCAAAATCCATGTCTTGATCCTCCACTGCCACCACTTCACCGGTC
GCTCCCCCAACCCCTCCCGTCTTGGCCTTCCTCCCCCCTCCTTCTCGCCC
TCCCTCTCCTACTCGCTTATTC
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protein sequence of jgi.p|Nanoce1779_2|572881

>mRNA_1614-protein ID=mRNA_1614-protein|Name=jgi.p|Nanoce1779_2|572881|organism=Nannochloropsis oceanica|type=polypeptide|length=101bp
MASARTLFLSLFFLSLPFLPLDTKTCTQTHSHADSHRQRQRILSIIYLPL
TATPPSFLPPCLLTNCLSLNPGLSPSPPPIYPFPSFHGFLDNISKSKSMS
*
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mRNA from alignment at scaffold_1:1078716..1079437-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1614 ID=mRNA_1614|Name=jgi.p|Nanoce1779_2|572881|organism=Nannochloropsis oceanica|type=mRNA|length=722bp|location=Sequence derived from alignment at scaffold_1:1078716..1079437- (Nannochloropsis oceanica)
TTCTCGTTTTTGTCCTATTATTCGTTCTTTTCATCTTTTCTCTCGAATGG
ATTCGACGTGCGTGTGTGCTTTTAATTGCTTGTTAACTGATTCGTTTCTT
ACTTTCCATCCTCCTAATGCTCGTATCTCCGCTGCCCATACAGGGCTAGG
CTTCGATGCAACCCGCTTGATGGAATGTAGGCGTTATGACTGCTATTTGT
ACTTCGTCCATGCTCTTCCCCCTTCTCTCTTCTCCTACCCCTCTTCAGCT
CTCCCCCCCTTCCTTCCCATCTATTGATCGCTTGCTCCTCTCGTGTGTTC
GCAATTAACACTCTCTCAGCATGGCTTCGGCACGTACTCTTTTCCTCTCC
CTTTTCTTCCTCTCGCTTCCCTTCCTTCCCCTCGACACGAAAACATGCAC
ACAGACACACAGTCACGCAGATTCACACAGGCAGAGACAAAGGATCTTAT
CTATTATCTACTTACCTCTCACCGCTACGCCCCCCTCTTTCCTCCCTCCT
TGTCTACTCACAAACTGCCTTTCATTAAATCCGGGACTTTCCCCTTCTCC
GCCTCCCATCTATCCCTTTCCTTCCTTTCATGGATTTCTCGACAACATCT
CCAAGTCAAAATCCATGTCTTGATCCTCCACTGCCACCACTTCACCGGTC
GCTCCCCCAACCCCTCCCGTCTTGGCCTTCCTCCCCCCTCCTTCTCGCCC
TCCCTCTCCTACTCGCTTATTC
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Coding sequence (CDS) from alignment at scaffold_1:1078716..1079437-

>mRNA_1614 ID=mRNA_1614|Name=jgi.p|Nanoce1779_2|572881|organism=Nannochloropsis oceanica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_1:1078716..1079437- (Nannochloropsis oceanica)
ATGGCTTCGGCACGTACTCTTTTCCTCTCCCTTTTCTTCCTCTCGCTTCC
CTTCCTTCCCCTCGACACGAAAACATGCACACAGACACACAGTCACGCAG
ATTCACACAGGCAGAGACAAAGGATCTTATCTATTATCTACTTACCTCTC
ACCGCTACGCCCCCCTCTTTCCTCCCTCCTTGTCTACTCACAAACTGCCT
TTCATTAAATCCGGGACTTTCCCCTTCTCCGCCTCCCATCTATCCCTTTC
CTTCCTTTCATGGATTTCTCGACAACATCTCCAAGTCAAAATCCATGTCT
TGA
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Synonyms
Publications