jgi.p|Nanoce1779_2|572880, mRNA_1613 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572880
Unique NamemRNA_1613
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length583
Alignment locationscaffold_1:1077403..1077985 -

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Properties
Property NameValue
TranscriptId572966
TrackFilteredModels2
ProteinId572880
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1077403..1077985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572880gene_1613Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572880mRNA_1613-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1613CDS_1613Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1613 ID=mRNA_1613|Name=jgi.p|Nanoce1779_2|572880|organism=Nannochloropsis oceanica|type=mRNA|length=583bp
CATGGCTCCTGCTGCTAAAATATGTCATTGCATCCTCGTCCTCATCGTCG
TCGTCGCCCTCCTCTTCGTCCTCCTCTTCGTTCCTCGTGCTGCCCGCGCG
ATCTCTTTCTCCCCTTTTGCCAGAAGCTGCTGTTGCAGCCACCTTATCCT
TCCTCTTCGCCGCCACCGCTGCCGCCCCTCGGCCGCTCACCTCACTGCTC
TCCTCTCCCTCTTCCTCATCACTCACCCCCCCCCTCATCCTCTTCAACCC
GGCCCCTGCCTCGTTCCCTTCCTGAGCAGCTTTTCGAGATTTCACTCCTC
TCCCATCTGCCTTCCTCCGTCTCTTCTCCTGCACCGCAGCCATGGCGGCC
AGCATACCCCCCACCTCCCCAACCTCCATCCCCGGGTTCCGTTTCCACTC
CCTCCTCGTCTCTTCCAACGCCACGTCTACCACGTCGCTAATCGCACTCG
TCGTGTTCTTGTTCACAAAATCGTCCAAGGCTAAATATAACTCCGGCTCA
GTCATCAACTTCAACCTCTTGTCCGACCCCTCGATCTCAGCCCGCACCAG
GTCCTCCACCTTCACCTCCCCTCCCTCCCCCCC
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protein sequence of jgi.p|Nanoce1779_2|572880

>mRNA_1613-protein ID=mRNA_1613-protein|Name=jgi.p|Nanoce1779_2|572880|organism=Nannochloropsis oceanica|type=polypeptide|length=161bp
MAPAAKICHCILVLIVVVALLFVLLFVPRAARAISFSPFARSCCCSHLIL
PLRRHRCRPSAAHLTALLSLFLITHPPPHPLQPGPCLVPFLSSFSRFHSS
PICLPPSLLLHRSHGGQHTPHLPNLHPRVPFPLPPRLFQRHVYHVANRTR
RVLVHKIVQG*
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mRNA from alignment at scaffold_1:1077403..1077985-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1613 ID=mRNA_1613|Name=jgi.p|Nanoce1779_2|572880|organism=Nannochloropsis oceanica|type=mRNA|length=583bp|location=Sequence derived from alignment at scaffold_1:1077403..1077985- (Nannochloropsis oceanica)
CATGGCTCCTGCTGCTAAAATATGTCATTGCATCCTCGTCCTCATCGTCG
TCGTCGCCCTCCTCTTCGTCCTCCTCTTCGTTCCTCGTGCTGCCCGCGCG
ATCTCTTTCTCCCCTTTTGCCAGAAGCTGCTGTTGCAGCCACCTTATCCT
TCCTCTTCGCCGCCACCGCTGCCGCCCCTCGGCCGCTCACCTCACTGCTC
TCCTCTCCCTCTTCCTCATCACTCACCCCCCCCCTCATCCTCTTCAACCC
GGCCCCTGCCTCGTTCCCTTCCTGAGCAGCTTTTCGAGATTTCACTCCTC
TCCCATCTGCCTTCCTCCGTCTCTTCTCCTGCACCGCAGCCATGGCGGCC
AGCATACCCCCCACCTCCCCAACCTCCATCCCCGGGTTCCGTTTCCACTC
CCTCCTCGTCTCTTCCAACGCCACGTCTACCACGTCGCTAATCGCACTCG
TCGTGTTCTTGTTCACAAAATCGTCCAAGGCTAAATATAACTCCGGCTCA
GTCATCAACTTCAACCTCTTGTCCGACCCCTCGATCTCAGCCCGCACCAG
GTCCTCCACCTTCACCTCCCCTCCCTCCCCCCC
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Coding sequence (CDS) from alignment at scaffold_1:1077403..1077985-

>mRNA_1613 ID=mRNA_1613|Name=jgi.p|Nanoce1779_2|572880|organism=Nannochloropsis oceanica|type=CDS|length=483bp|location=Sequence derived from alignment at scaffold_1:1077403..1077985- (Nannochloropsis oceanica)
ATGGCTCCTGCTGCTAAAATATGTCATTGCATCCTCGTCCTCATCGTCGT
CGTCGCCCTCCTCTTCGTCCTCCTCTTCGTTCCTCGTGCTGCCCGCGCGA
TCTCTTTCTCCCCTTTTGCCAGAAGCTGCTGTTGCAGCCACCTTATCCTT
CCTCTTCGCCGCCACCGCTGCCGCCCCTCGGCCGCTCACCTCACTGCTCT
CCTCTCCCTCTTCCTCATCACTCACCCCCCCCCTCATCCTCTTCAACCCG
GCCCCTGCCTCGTTCCCTTCCTGAGCAGCTTTTCGAGATTTCACTCCTCT
CCCATCTGCCTTCCTCCGTCTCTTCTCCTGCACCGCAGCCATGGCGGCCA
GCATACCCCCCACCTCCCCAACCTCCATCCCCGGGTTCCGTTTCCACTCC
CTCCTCGTCTCTTCCAACGCCACGTCTACCACGTCGCTAATCGCACTCGT
CGTGTTCTTGTTCACAAAATCGTCCAAGGCTAA
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Synonyms
Publications