jgi.p|Nanoce1779_2|572874, mRNA_1611 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572874
Unique NamemRNA_1611
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1336
Alignment locationscaffold_1:1072981..1074316 -

Link to JBrowse

Properties
Property NameValue
TranscriptId572960
TrackFilteredModels2
ProteinId572874
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1072981..1074316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572874gene_1611Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572874mRNA_1611-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1611CDS_1611Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1611 ID=mRNA_1611|Name=jgi.p|Nanoce1779_2|572874|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp
ACAGATCGATCATCCAATAATCATGTCTCGTATCCTTGTACTCGCCAGCG
CGCTGTGCGCTACAGCCTCTGCATTTATGCTCCCAACAGCGCCCTCCGCT
GGCTTAGCGCCGGCATCCGCCATCACCAGCAGCATGGCCAGCAGTGCCTC
TGCATTCGTACCGCGCGTACCTCTGCGATGGGAGCTCCAGAGCACTACCG
ACGGCCAACAAACGGAGGCCGCCGCGACGACGGCTGGCACAGACGGGAAG
GAAGAGGAGGACAAAGACTCCTTGGTCGGGTGGCAGCTTGCGTGGGAGGA
CGTCAAAACCCTGCCTGTGGAGGAAAACAGCCAGACACCCCTCATCCTGC
GCTCGACTTGGGACCAGTCTTACTTGAAGGACCGTTTCTTCATCCTCATC
CGTCACAAGGGCGATGTCAAGTTGGTTGACTCGTCTTGCGGTCGTTGTTC
ATTTCCCTTGTTGAACGGGCCGATTGTCCAGGAGCCGCGTATGGAGCAGG
AGGATAACACGTCGATTACTTGCAAGGTGTGTGGGATGAGGCACTCCATC
TTGACGGGTAAGGCCGTGAAGCCTAAGAGCGGGGGGTTGGACCTGGGGCA
GAGCATGGGGAATTTTTTCTTCAAGAAGGGAGAGATGAAAGACATTGAAG
TGCATCCGACTAAGATTATGCCGGATGGGAAGTTGTACGCGAAGATCTCA
CCGTTGAAGGTCAAGAGGCCTTCCACTGATATGATTGTGCTTTAAATTTC
TTGTGACACGGAAGGCAGCAAGGAAGGCACAAATGACAAAAGGGCGATAT
AGAGAGGGATGCTGTGTGTGTAAGGAGCAGTGCCGCTTGCGGTTTGACTG
ATTGATATGTGTGTGAGCGTGTGTGTGTGTCCTTGTGTTTGGGGGGAAGG
GGGGGAGGGGAGGAATGAGCCTTTGTTCGGTGCGTAAGTGGGGAATAAGC
ATGCATGCATTTGCGTGTGCGTTTTCGAGCGGTGGCTGCAGCGGATGTTC
ACGTGTTTGTACATTACATTTCCTTTAATCATTGACCAGTTGTGTGGTAA
GTAGGAAGCATGGGTAGGTGGGGTAAAGGAGTTGAGCCTTAATCTGCTTT
TAGAATAGAGCTCATGGAAGGGTGAAAGTCAAACGAAAGGCAATAAAAAC
ATAGGCAGGGTTGATAGCGGGGACAGAAGGGTCACCACCTTCGACTAGCT
CGCGGCAAGCAATGTGGAAGGCTTCTGGGAGACGACGACGAGGTGACGAC
CACCACCTGAAACCGCGAGTGGAAGACGTTTTAAAAAGGCATAACCCACC
ACAACGAAAGAAGAATTAATACATACACACACCTCA
back to top

protein sequence of jgi.p|Nanoce1779_2|572874

>mRNA_1611-protein ID=mRNA_1611-protein|Name=jgi.p|Nanoce1779_2|572874|organism=Nannochloropsis oceanica|type=polypeptide|length=241bp
MSRILVLASALCATASAFMLPTAPSAGLAPASAITSSMASSASAFVPRVP
LRWELQSTTDGQQTEAAATTAGTDGKEEEDKDSLVGWQLAWEDVKTLPVE
ENSQTPLILRSTWDQSYLKDRFFILIRHKGDVKLVDSSCGRCSFPLLNGP
IVQEPRMEQEDNTSITCKVCGMRHSILTGKAVKPKSGGLDLGQSMGNFFF
KKGEMKDIEVHPTKIMPDGKLYAKISPLKVKRPSTDMIVL*
back to top

mRNA from alignment at scaffold_1:1072981..1074316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1611 ID=mRNA_1611|Name=jgi.p|Nanoce1779_2|572874|organism=Nannochloropsis oceanica|type=mRNA|length=1336bp|location=Sequence derived from alignment at scaffold_1:1072981..1074316- (Nannochloropsis oceanica)
ACAGATCGATCATCCAATAATCATGTCTCGTATCCTTGTACTCGCCAGCG
CGCTGTGCGCTACAGCCTCTGCATTTATGCTCCCAACAGCGCCCTCCGCT
GGCTTAGCGCCGGCATCCGCCATCACCAGCAGCATGGCCAGCAGTGCCTC
TGCATTCGTACCGCGCGTACCTCTGCGATGGGAGCTCCAGAGCACTACCG
ACGGCCAACAAACGGAGGCCGCCGCGACGACGGCTGGCACAGACGGGAAG
GAAGAGGAGGACAAAGACTCCTTGGTCGGGTGGCAGCTTGCGTGGGAGGA
CGTCAAAACCCTGCCTGTGGAGGAAAACAGCCAGACACCCCTCATCCTGC
GCTCGACTTGGGACCAGTCTTACTTGAAGGACCGTTTCTTCATCCTCATC
CGTCACAAGGGCGATGTCAAGTTGGTTGACTCGTCTTGCGGTCGTTGTTC
ATTTCCCTTGTTGAACGGGCCGATTGTCCAGGAGCCGCGTATGGAGCAGG
AGGATAACACGTCGATTACTTGCAAGGTGTGTGGGATGAGGCACTCCATC
TTGACGGGTAAGGCCGTGAAGCCTAAGAGCGGGGGGTTGGACCTGGGGCA
GAGCATGGGGAATTTTTTCTTCAAGAAGGGAGAGATGAAAGACATTGAAG
TGCATCCGACTAAGATTATGCCGGATGGGAAGTTGTACGCGAAGATCTCA
CCGTTGAAGGTCAAGAGGCCTTCCACTGATATGATTGTGCTTTAAATTTC
TTGTGACACGGAAGGCAGCAAGGAAGGCACAAATGACAAAAGGGCGATAT
AGAGAGGGATGCTGTGTGTGTAAGGAGCAGTGCCGCTTGCGGTTTGACTG
ATTGATATGTGTGTGAGCGTGTGTGTGTGTCCTTGTGTTTGGGGGGAAGG
GGGGGAGGGGAGGAATGAGCCTTTGTTCGGTGCGTAAGTGGGGAATAAGC
ATGCATGCATTTGCGTGTGCGTTTTCGAGCGGTGGCTGCAGCGGATGTTC
ACGTGTTTGTACATTACATTTCCTTTAATCATTGACCAGTTGTGTGGTAA
GTAGGAAGCATGGGTAGGTGGGGTAAAGGAGTTGAGCCTTAATCTGCTTT
TAGAATAGAGCTCATGGAAGGGTGAAAGTCAAACGAAAGGCAATAAAAAC
ATAGGCAGGGTTGATAGCGGGGACAGAAGGGTCACCACCTTCGACTAGCT
CGCGGCAAGCAATGTGGAAGGCTTCTGGGAGACGACGACGAGGTGACGAC
CACCACCTGAAACCGCGAGTGGAAGACGTTTTAAAAAGGCATAACCCACC
ACAACGAAAGAAGAATTAATACATACACACACCTCA
back to top

Coding sequence (CDS) from alignment at scaffold_1:1072981..1074316-

>mRNA_1611 ID=mRNA_1611|Name=jgi.p|Nanoce1779_2|572874|organism=Nannochloropsis oceanica|type=CDS|length=723bp|location=Sequence derived from alignment at scaffold_1:1072981..1074316- (Nannochloropsis oceanica)
ATGTCTCGTATCCTTGTACTCGCCAGCGCGCTGTGCGCTACAGCCTCTGC
ATTTATGCTCCCAACAGCGCCCTCCGCTGGCTTAGCGCCGGCATCCGCCA
TCACCAGCAGCATGGCCAGCAGTGCCTCTGCATTCGTACCGCGCGTACCT
CTGCGATGGGAGCTCCAGAGCACTACCGACGGCCAACAAACGGAGGCCGC
CGCGACGACGGCTGGCACAGACGGGAAGGAAGAGGAGGACAAAGACTCCT
TGGTCGGGTGGCAGCTTGCGTGGGAGGACGTCAAAACCCTGCCTGTGGAG
GAAAACAGCCAGACACCCCTCATCCTGCGCTCGACTTGGGACCAGTCTTA
CTTGAAGGACCGTTTCTTCATCCTCATCCGTCACAAGGGCGATGTCAAGT
TGGTTGACTCGTCTTGCGGTCGTTGTTCATTTCCCTTGTTGAACGGGCCG
ATTGTCCAGGAGCCGCGTATGGAGCAGGAGGATAACACGTCGATTACTTG
CAAGGTGTGTGGGATGAGGCACTCCATCTTGACGGGTAAGGCCGTGAAGC
CTAAGAGCGGGGGGTTGGACCTGGGGCAGAGCATGGGGAATTTTTTCTTC
AAGAAGGGAGAGATGAAAGACATTGAAGTGCATCCGACTAAGATTATGCC
GGATGGGAAGTTGTACGCGAAGATCTCACCGTTGAAGGTCAAGAGGCCTT
CCACTGATATGATTGTGCTTTAA
back to top
Synonyms
Publications