jgi.p|Nanoce1779_2|523534, mRNA_161 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|523534
Unique NamemRNA_161
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1512
Alignment locationscaffold_3:409233..410744 -

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Properties
Property NameValue
TranscriptId523620
TrackFilteredModels2
ProteinId523534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:409233..410744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523534gene_161Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_161CDS_161Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|523534mRNA_161-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_161 ID=mRNA_161|Name=jgi.p|Nanoce1779_2|523534|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp
ATGCCCGTCCATGTGAAGGGCGATAGTAACAAGGAGGCTGCCGCAGCAGC
ATCTGCACAACCCTCAGTTAGTCAGAAGAATGACGACGAGATACCCGACC
CCGATGAGGAAGGCGAGGAGGTAGACGTCGCGACCTTTGAGGAGTTGGGT
GTGGTGAAGCCCTTGTGCGAAGCCTGCACGGCCATTGGCTGGATCAAACC
CACGGATATTCAACAACAAGCCATTCATGCGGCGCTGCAAGGCCGTGACG
TGATCGGGCTGGCCGAGACAGGCTCCGGAAAAACAGGCGCATTTGCCTTG
CCCGTGCTCCAGGCCTTGCTAGCCAAGCCTCAAAGGCTGTTTGCCGTCGT
CCTGGCCCCAACACGCGAGCTTGCCTTCCAAATCCATGAGGTCTTTGAGG
CGCTCGGCGCAAGCATTGGTTTGAAATGCTGCTGTGTTGTGGGCGGGGTG
GACATGATGACGCAAGCCATCGCATTGGCCCGCAAACCCCACATCGTCGT
CGCTACCCCCGGACGTCTGGTCGACCACCTCGAAAACACGAAAGGTTTCA
ATCTCCGTGAAGCCCGCTTTTTGATCCTAGACGAAGCAGATCGCATGCTC
TCCATGGACTTTGAAGAGGAAATCAACAAAATTCTGACGGTCATGCCCAC
GGGGAAAGCCCGTCGGACCTTCCTCTTCAGTGCTACCATGACCAGCAAGG
TCGCCAAGCTCCAACGCGCCTCCCTCACCGACCCAGTAAAGGTAGAAGTA
TCCTCCAAATTCTCCACCCCCCGCACTCTGGTCCAGCAGTACCTGTTTAT
TCCGGCCAAGTACAAGGACTGCTACCTTGCCTACGTTCTGAACGAATTCG
CTGGACAAACCACCCTGGTGTTCGTCAGCACATGCAACAATGCCCAACGC
CTCGCCCTTCTTCTGCGCAACCTAGGGTTTGGCGCCATCTGCCTACACGG
GCAAATGACCCAACCCAAACGCCTGGGTGCCTTGCATAAATTCAAGTCAG
GACAGCGATCTATCCTCATTGCTACTGACGTTGCGTCACGCGGGCTTGAC
ATCCCAGCTGTGGACCTGGTCATCAATTTCGACATCCCCTCGCATGGAAA
AGACTACATCCATCGTGTCGGGAGGACGGCAAGGGCGGGGAGGGCAGGGA
GGTCGATCGCATTTGTCACTCAATATGATGTGGAGGTGTACCAAAGGTTG
GAGCTCTTGTTGGGCACCAAGTTACCCGAGTATAAAGCAGAGGAGGAAAC
CGTGTTAATTTTATTGGAGAGGGTCAGCGAAGCGCAACGAATTGCAGTGC
GAGAACTGAGGGAGTTGCAATTGGGCGGGGGGAAGAAGCGGAAGAGAGGG
GGAGGGGAGGAGGAGGGGGAGGAGGCGGAGGGGGAGGAAGGGGGCGGAGC
GGAGGGGAAACGTTTTCCAGGGTCAAAGGGGGGAGTAAGGGGGGGGGGGG
GGGGGGGGGGAGGGAGGGGACGGGGAGGAAGGGGGAGAGGACGGGGCCGA
GGGAGGTTTTAA
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protein sequence of jgi.p|Nanoce1779_2|523534

>mRNA_161-protein ID=mRNA_161-protein|Name=jgi.p|Nanoce1779_2|523534|organism=Nannochloropsis oceanica|type=polypeptide|length=504bp
MPVHVKGDSNKEAAAAASAQPSVSQKNDDEIPDPDEEGEEVDVATFEELG
VVKPLCEACTAIGWIKPTDIQQQAIHAALQGRDVIGLAETGSGKTGAFAL
PVLQALLAKPQRLFAVVLAPTRELAFQIHEVFEALGASIGLKCCCVVGGV
DMMTQAIALARKPHIVVATPGRLVDHLENTKGFNLREARFLILDEADRML
SMDFEEEINKILTVMPTGKARRTFLFSATMTSKVAKLQRASLTDPVKVEV
SSKFSTPRTLVQQYLFIPAKYKDCYLAYVLNEFAGQTTLVFVSTCNNAQR
LALLLRNLGFGAICLHGQMTQPKRLGALHKFKSGQRSILIATDVASRGLD
IPAVDLVINFDIPSHGKDYIHRVGRTARAGRAGRSIAFVTQYDVEVYQRL
ELLLGTKLPEYKAEEETVLILLERVSEAQRIAVRELRELQLGGGKKRKRG
GGEEEGEEAEGEEGGGAEGKRFPGSKGGVRGGGGGGGGRGRGGRGRGRGR
GRF*
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mRNA from alignment at scaffold_3:409233..410744-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_161 ID=mRNA_161|Name=jgi.p|Nanoce1779_2|523534|organism=Nannochloropsis oceanica|type=mRNA|length=1512bp|location=Sequence derived from alignment at scaffold_3:409233..410744- (Nannochloropsis oceanica)
ATGCCCGTCCATGTGAAGGGCGATAGTAACAAGGAGGCTGCCGCAGCAGC
ATCTGCACAACCCTCAGTTAGTCAGAAGAATGACGACGAGATACCCGACC
CCGATGAGGAAGGCGAGGAGGTAGACGTCGCGACCTTTGAGGAGTTGGGT
GTGGTGAAGCCCTTGTGCGAAGCCTGCACGGCCATTGGCTGGATCAAACC
CACGGATATTCAACAACAAGCCATTCATGCGGCGCTGCAAGGCCGTGACG
TGATCGGGCTGGCCGAGACAGGCTCCGGAAAAACAGGCGCATTTGCCTTG
CCCGTGCTCCAGGCCTTGCTAGCCAAGCCTCAAAGGCTGTTTGCCGTCGT
CCTGGCCCCAACACGCGAGCTTGCCTTCCAAATCCATGAGGTCTTTGAGG
CGCTCGGCGCAAGCATTGGTTTGAAATGCTGCTGTGTTGTGGGCGGGGTG
GACATGATGACGCAAGCCATCGCATTGGCCCGCAAACCCCACATCGTCGT
CGCTACCCCCGGACGTCTGGTCGACCACCTCGAAAACACGAAAGGTTTCA
ATCTCCGTGAAGCCCGCTTTTTGATCCTAGACGAAGCAGATCGCATGCTC
TCCATGGACTTTGAAGAGGAAATCAACAAAATTCTGACGGTCATGCCCAC
GGGGAAAGCCCGTCGGACCTTCCTCTTCAGTGCTACCATGACCAGCAAGG
TCGCCAAGCTCCAACGCGCCTCCCTCACCGACCCAGTAAAGGTAGAAGTA
TCCTCCAAATTCTCCACCCCCCGCACTCTGGTCCAGCAGTACCTGTTTAT
TCCGGCCAAGTACAAGGACTGCTACCTTGCCTACGTTCTGAACGAATTCG
CTGGACAAACCACCCTGGTGTTCGTCAGCACATGCAACAATGCCCAACGC
CTCGCCCTTCTTCTGCGCAACCTAGGGTTTGGCGCCATCTGCCTACACGG
GCAAATGACCCAACCCAAACGCCTGGGTGCCTTGCATAAATTCAAGTCAG
GACAGCGATCTATCCTCATTGCTACTGACGTTGCGTCACGCGGGCTTGAC
ATCCCAGCTGTGGACCTGGTCATCAATTTCGACATCCCCTCGCATGGAAA
AGACTACATCCATCGTGTCGGGAGGACGGCAAGGGCGGGGAGGGCAGGGA
GGTCGATCGCATTTGTCACTCAATATGATGTGGAGGTGTACCAAAGGTTG
GAGCTCTTGTTGGGCACCAAGTTACCCGAGTATAAAGCAGAGGAGGAAAC
CGTGTTAATTTTATTGGAGAGGGTCAGCGAAGCGCAACGAATTGCAGTGC
GAGAACTGAGGGAGTTGCAATTGGGCGGGGGGAAGAAGCGGAAGAGAGGG
GGAGGGGAGGAGGAGGGGGAGGAGGCGGAGGGGGAGGAAGGGGGCGGAGC
GGAGGGGAAACGTTTTCCAGGGTCAAAGGGGGGAGTAAGGGGGGGGGGGG
GGGGGGGGGGAGGGAGGGGACGGGGAGGAAGGGGGAGAGGACGGGGCCGA
GGGAGGTTTTAA
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Coding sequence (CDS) from alignment at scaffold_3:409233..410744-

>mRNA_161 ID=mRNA_161|Name=jgi.p|Nanoce1779_2|523534|organism=Nannochloropsis oceanica|type=CDS|length=1512bp|location=Sequence derived from alignment at scaffold_3:409233..410744- (Nannochloropsis oceanica)
ATGCCCGTCCATGTGAAGGGCGATAGTAACAAGGAGGCTGCCGCAGCAGC
ATCTGCACAACCCTCAGTTAGTCAGAAGAATGACGACGAGATACCCGACC
CCGATGAGGAAGGCGAGGAGGTAGACGTCGCGACCTTTGAGGAGTTGGGT
GTGGTGAAGCCCTTGTGCGAAGCCTGCACGGCCATTGGCTGGATCAAACC
CACGGATATTCAACAACAAGCCATTCATGCGGCGCTGCAAGGCCGTGACG
TGATCGGGCTGGCCGAGACAGGCTCCGGAAAAACAGGCGCATTTGCCTTG
CCCGTGCTCCAGGCCTTGCTAGCCAAGCCTCAAAGGCTGTTTGCCGTCGT
CCTGGCCCCAACACGCGAGCTTGCCTTCCAAATCCATGAGGTCTTTGAGG
CGCTCGGCGCAAGCATTGGTTTGAAATGCTGCTGTGTTGTGGGCGGGGTG
GACATGATGACGCAAGCCATCGCATTGGCCCGCAAACCCCACATCGTCGT
CGCTACCCCCGGACGTCTGGTCGACCACCTCGAAAACACGAAAGGTTTCA
ATCTCCGTGAAGCCCGCTTTTTGATCCTAGACGAAGCAGATCGCATGCTC
TCCATGGACTTTGAAGAGGAAATCAACAAAATTCTGACGGTCATGCCCAC
GGGGAAAGCCCGTCGGACCTTCCTCTTCAGTGCTACCATGACCAGCAAGG
TCGCCAAGCTCCAACGCGCCTCCCTCACCGACCCAGTAAAGGTAGAAGTA
TCCTCCAAATTCTCCACCCCCCGCACTCTGGTCCAGCAGTACCTGTTTAT
TCCGGCCAAGTACAAGGACTGCTACCTTGCCTACGTTCTGAACGAATTCG
CTGGACAAACCACCCTGGTGTTCGTCAGCACATGCAACAATGCCCAACGC
CTCGCCCTTCTTCTGCGCAACCTAGGGTTTGGCGCCATCTGCCTACACGG
GCAAATGACCCAACCCAAACGCCTGGGTGCCTTGCATAAATTCAAGTCAG
GACAGCGATCTATCCTCATTGCTACTGACGTTGCGTCACGCGGGCTTGAC
ATCCCAGCTGTGGACCTGGTCATCAATTTCGACATCCCCTCGCATGGAAA
AGACTACATCCATCGTGTCGGGAGGACGGCAAGGGCGGGGAGGGCAGGGA
GGTCGATCGCATTTGTCACTCAATATGATGTGGAGGTGTACCAAAGGTTG
GAGCTCTTGTTGGGCACCAAGTTACCCGAGTATAAAGCAGAGGAGGAAAC
CGTGTTAATTTTATTGGAGAGGGTCAGCGAAGCGCAACGAATTGCAGTGC
GAGAACTGAGGGAGTTGCAATTGGGCGGGGGGAAGAAGCGGAAGAGAGGG
GGAGGGGAGGAGGAGGGGGAGGAGGCGGAGGGGGAGGAAGGGGGCGGAGC
GGAGGGGAAACGTTTTCCAGGGTCAAAGGGGGGAGTAAGGGGGGGGGGGG
GGGGGGGGGGAGGGAGGGGACGGGGAGGAAGGGGGAGAGGACGGGGCCGA
GGGAGGTTTTAA
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Synonyms
Publications