jgi.p|Nanoce1779_2|572869, mRNA_1608 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572869
Unique NamemRNA_1608
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1097
Alignment locationscaffold_1:1067253..1068349 -

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Properties
Property NameValue
TranscriptId572955
TrackFilteredModels2
ProteinId572869
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1067253..1068349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572869gene_1608Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572869mRNA_1608-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1608CDS_1608Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1608 ID=mRNA_1608|Name=jgi.p|Nanoce1779_2|572869|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp
ACAGAGAGAGTTATGACAACCATGCATTGTCTTGCTCGTCTTGATCTGCT
TGGCTTGCTATTGTTTGTTGTTTGTCAAGTGCATCATGCATTCAATCCCC
CGTCATCGCCTCTACTACCACTTCCTGCCTCGTCACGGGCCAAGCCGATG
GAGCGTCGCGACCTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAGTCAT
GGGTCTTGGCCTGCCTGCTGCTGCACTTATACACCCACGCTCCGCCTCAG
CTGCCACCGGCGCCGCAGTGCCGCATACGGTCGATTACACAGCCTTTCAA
AAGAAGCTTTTCCAAAAACCGCCGGGCCTGCTCACCTACCCCGCGTGGAT
GGAGGGGGAATGGCAGGTGTCTTGCAAATTCATTGGGGCTGACTTTCCGT
CTTCTGCTGCCGAGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGTGTCC
GACACGGGCTTGCCTGGGTTTCGTCGATTGAGCATTGCCATGGTCCCGGA
CGTGGGTAAAGACCACGCATTTCGCATGCGATTCGTGTCGAAGAATGGAG
GACGGGTGGAGGAAGACAAGATATTCAATCTCAAGAACGCTTTGGAGTCA
GAGTTGGGTAAAGCAGCTGTCACTACCATTGAGTACAATCCTGACAAGAA
CCCAAACCGTGCCTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAATGCGC
AGCGTATCGAACTCTTCTGGAATGCTCGCTCGGTCTTGCCATCACCACCA
GGGCCAGATAGCAGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAGACGT
ACGACAGGTATCCTTGACGCCCCAGCTTGCCGAGACAAGCACGGTGGGAG
ATTACAGGCATTTGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGATAAAG
GCTTATTTGTCTACTGTTGCGTATGCGACTCCACAAGATCCCCTATTCCA
AACGTCAGGGTTACAGCCGTTGGTCGTGTATTTTCATCTGTTGACCATGC
GCAGTGCCCCTGCCCCTCCTCAGGTGGCGGGAGAATGATTGTAAGGACAA
GAAACGAGAGAGAAATCAAAAAAGAATAAGCAAATTAGTAGCATGTA
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protein sequence of jgi.p|Nanoce1779_2|572869

>mRNA_1608-protein ID=mRNA_1608-protein|Name=jgi.p|Nanoce1779_2|572869|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MTTMHCLARLDLLGLLLFVVCQVHHAFNPPSSPLLPLPASSRAKPMERRD
LLKDGLLLLGGVMGLGLPAAALIHPRSASAATGAAVPHTVDYTAFQKKLF
QKPPGLLTYPAWMEGEWQVSCKFIGADFPSSAAEASPFVPKGRIVSDTGL
PGFRRLSIAMVPDVGKDHAFRMRFVSKNGGRVEEDKIFNLKNALESELGK
AAVTTIEYNPDKNPNRASLNLLPGASPNAQRIELFWNARSVLPSPPGPDS
SSSTGSFRFLEDVRQVSLTPQLAETSTVGDYRHLWEFYPAGPGLIKAYLS
TVAYATPQDPLFQTSGLQPLVVYFHLLTMRSAPAPPQVAGE*
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mRNA from alignment at scaffold_1:1067253..1068349-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1608 ID=mRNA_1608|Name=jgi.p|Nanoce1779_2|572869|organism=Nannochloropsis oceanica|type=mRNA|length=1097bp|location=Sequence derived from alignment at scaffold_1:1067253..1068349- (Nannochloropsis oceanica)
ACAGAGAGAGTTATGACAACCATGCATTGTCTTGCTCGTCTTGATCTGCT
TGGCTTGCTATTGTTTGTTGTTTGTCAAGTGCATCATGCATTCAATCCCC
CGTCATCGCCTCTACTACCACTTCCTGCCTCGTCACGGGCCAAGCCGATG
GAGCGTCGCGACCTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAGTCAT
GGGTCTTGGCCTGCCTGCTGCTGCACTTATACACCCACGCTCCGCCTCAG
CTGCCACCGGCGCCGCAGTGCCGCATACGGTCGATTACACAGCCTTTCAA
AAGAAGCTTTTCCAAAAACCGCCGGGCCTGCTCACCTACCCCGCGTGGAT
GGAGGGGGAATGGCAGGTGTCTTGCAAATTCATTGGGGCTGACTTTCCGT
CTTCTGCTGCCGAGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGTGTCC
GACACGGGCTTGCCTGGGTTTCGTCGATTGAGCATTGCCATGGTCCCGGA
CGTGGGTAAAGACCACGCATTTCGCATGCGATTCGTGTCGAAGAATGGAG
GACGGGTGGAGGAAGACAAGATATTCAATCTCAAGAACGCTTTGGAGTCA
GAGTTGGGTAAAGCAGCTGTCACTACCATTGAGTACAATCCTGACAAGAA
CCCAAACCGTGCCTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAATGCGC
AGCGTATCGAACTCTTCTGGAATGCTCGCTCGGTCTTGCCATCACCACCA
GGGCCAGATAGCAGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAGACGT
ACGACAGGTATCCTTGACGCCCCAGCTTGCCGAGACAAGCACGGTGGGAG
ATTACAGGCATTTGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGATAAAG
GCTTATTTGTCTACTGTTGCGTATGCGACTCCACAAGATCCCCTATTCCA
AACGTCAGGGTTACAGCCGTTGGTCGTGTATTTTCATCTGTTGACCATGC
GCAGTGCCCCTGCCCCTCCTCAGGTGGCGGGAGAATGATTGTAAGGACAA
GAAACGAGAGAGAAATCAAAAAAGAATAAGCAAATTAGTAGCATGTA
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Coding sequence (CDS) from alignment at scaffold_1:1067253..1068349-

>mRNA_1608 ID=mRNA_1608|Name=jgi.p|Nanoce1779_2|572869|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_1:1067253..1068349- (Nannochloropsis oceanica)
ATGACAACCATGCATTGTCTTGCTCGTCTTGATCTGCTTGGCTTGCTATT
GTTTGTTGTTTGTCAAGTGCATCATGCATTCAATCCCCCGTCATCGCCTC
TACTACCACTTCCTGCCTCGTCACGGGCCAAGCCGATGGAGCGTCGCGAC
CTGCTGAAGGACGGTCTGCTGCTCCTCGGAGGAGTCATGGGTCTTGGCCT
GCCTGCTGCTGCACTTATACACCCACGCTCCGCCTCAGCTGCCACCGGCG
CCGCAGTGCCGCATACGGTCGATTACACAGCCTTTCAAAAGAAGCTTTTC
CAAAAACCGCCGGGCCTGCTCACCTACCCCGCGTGGATGGAGGGGGAATG
GCAGGTGTCTTGCAAATTCATTGGGGCTGACTTTCCGTCTTCTGCTGCCG
AGGCCTCGCCCTTCGTGCCAAAAGGCCGCATTGTGTCCGACACGGGCTTG
CCTGGGTTTCGTCGATTGAGCATTGCCATGGTCCCGGACGTGGGTAAAGA
CCACGCATTTCGCATGCGATTCGTGTCGAAGAATGGAGGACGGGTGGAGG
AAGACAAGATATTCAATCTCAAGAACGCTTTGGAGTCAGAGTTGGGTAAA
GCAGCTGTCACTACCATTGAGTACAATCCTGACAAGAACCCAAACCGTGC
CTCGCTTAACCTCTTGCCGGGTGCCAGTCCCAATGCGCAGCGTATCGAAC
TCTTCTGGAATGCTCGCTCGGTCTTGCCATCACCACCAGGGCCAGATAGC
AGCAGTAGCACCGGCTCTTTTCGTTTCCTCGAAGACGTACGACAGGTATC
CTTGACGCCCCAGCTTGCCGAGACAAGCACGGTGGGAGATTACAGGCATT
TGTGGGAGTTTTATCCGGCGGGGCCTGGTTTGATAAAGGCTTATTTGTCT
ACTGTTGCGTATGCGACTCCACAAGATCCCCTATTCCAAACGTCAGGGTT
ACAGCCGTTGGTCGTGTATTTTCATCTGTTGACCATGCGCAGTGCCCCTG
CCCCTCCTCAGGTGGCGGGAGAATGA
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Synonyms
Publications