jgi.p|Nanoce1779_2|572867, mRNA_1607 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572867
Unique NamemRNA_1607
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1298
Alignment locationscaffold_1:1065821..1067239 +

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Properties
Property NameValue
TranscriptId572953
TrackFilteredModels2
ProteinId572867
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1065821..1067239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572867gene_1607Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572867mRNA_1607-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1607CDS_1607Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1607 ID=mRNA_1607|Name=jgi.p|Nanoce1779_2|572867|organism=Nannochloropsis oceanica|type=mRNA|length=1298bp
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGACTCCCCTTT
GTTGGTGCGCAACCATCGCTTCCTTCTCTGTCCGCACGAAAGCGCTCCTC
CGACTTCTCGTCGACGCAGGGGCTGACCCCAATTGGCAAGACCTCTATGG
CTATACTCCTCTCACACACGCTGTCGTGCGCGGCTCAGTCGACGCCACCC
GTCGGGCCCGCGTTCAAGCGCTGCTTGAATTAGGCGCGGACCCGCGCGTG
AGGGACTATGACGGAAAGGAACCGCTGGATTACCTAGGAATGAACACAGA
TGATGGATGCATATGGACGGCAGCCTTACCAGAGAATGGGCGGGAGATGG
AACGCTGTCGGGCATTGTTGAAAGATGAGGTGTTTAGGAGGGAAGTGCGT
GAGGTTTTGATGGAGGCGCGTCGTCGTTTTTTCAACGTGGCTAAAGACCA
AAACGAAGGGAATGATCATGAAAGAAAAGGCATAGAAGAGATGAAGAGAC
CACGACCGAGAGAAGGAAGCTGGAGGAGCGTGGCCGTGGAAGAGGATCAC
GTGGAGGTGGAGAAAGGCAGGAATGAGGAGGGGGGGGAGGTGGCCAGGCG
GTTGGTGGACTTGCGTGACGACATGATGTTTATGAGATGCTTGCAATATA
TTTGAATTGTTGGGCTTATAGACAAGCGGTGTAAAGAATGCTTGGCCTGT
GTTTATACATATACATATACATAAATATTTTGATCCGACGTGCAAATATA
CATGCACTCCTGTCGGTTTGAGGAGAGCGATACCGTGAATGAGATATTTG
AATGCAAAAACAATGAGGGAAGATGTAGATTCTGGATTGCAGCGATGCCA
GGAAAGAGGGGCGGAGAGGACTAAAGACGGAACATGTCGAAAAAGATGTA
CCACAGAATAAGGATTACTTCCATTTTCATGATTAGACGGGTTTAAAGCT
TTCTAGCCGCGTATGCACGGTGAAAAAGGAATAAGGGGAAAGGCAAAT
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protein sequence of jgi.p|Nanoce1779_2|572867

>mRNA_1607-protein ID=mRNA_1607-protein|Name=jgi.p|Nanoce1779_2|572867|organism=Nannochloropsis oceanica|type=polypeptide|length=299bp
MSAAAVVCAAAEAPEASTALASTIYTKALAAAQRNDIRLLTGIWEKHGGR
IITEPLPEGSGYIIHHAVKLLRVKSVIWLLEHGADVNAIDRDGETPLCWC
ATIASFSVRTKALLRLLVDAGADPNWQDLYGYTPLTHAVVRGSVDATRRA
RVQALLELGADPRVRDYDGKEPLDYLGMNTDDGCIWTAALPENGREMERC
RALLKDEVFRREVREVLMEARRRFFNVAKDQNEGNDHERKGIEEMKRPRP
REGSWRSVAVEEDHVEVEKGRNEEGGEVARRLVDLRDDMMFMRCLQYI*
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mRNA from alignment at scaffold_1:1065821..1067239+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1607 ID=mRNA_1607|Name=jgi.p|Nanoce1779_2|572867|organism=Nannochloropsis oceanica|type=mRNA|length=1419bp|location=Sequence derived from alignment at scaffold_1:1065821..1067239+ (Nannochloropsis oceanica)
ACAGCGACAGGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGA
GCAGCCACATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCT
GAAGCTTCCACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGC
CGCCCAACGCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATG
GAGGCAGAATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATT
CACCACGCAGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGA
ACATGGAGCGGACGTGAATGCAATTGATCGCGACGGCGAGGTACGTCTTT
CTTTCTGTCTCATTTATTTTCTTCTGCTGATTGATCTCGCGTTTCTCCTG
GAACCGTGGTGCCGTAACCAACCCTTCATGCACCACTCCTCCATCTCTTT
CCCCCCGACAGACTCCCCTTTGTTGGTGCGCAACCATCGCTTCCTTCTCT
GTCCGCACGAAAGCGCTCCTCCGACTTCTCGTCGACGCAGGGGCTGACCC
CAATTGGCAAGACCTCTATGGCTATACTCCTCTCACACACGCTGTCGTGC
GCGGCTCAGTCGACGCCACCCGTCGGGCCCGCGTTCAAGCGCTGCTTGAA
TTAGGCGCGGACCCGCGCGTGAGGGACTATGACGGAAAGGAACCGCTGGA
TTACCTAGGAATGAACACAGATGATGGATGCATATGGACGGCAGCCTTAC
CAGAGAATGGGCGGGAGATGGAACGCTGTCGGGCATTGTTGAAAGATGAG
GTGTTTAGGAGGGAAGTGCGTGAGGTTTTGATGGAGGCGCGTCGTCGTTT
TTTCAACGTGGCTAAAGACCAAAACGAAGGGAATGATCATGAAAGAAAAG
GCATAGAAGAGATGAAGAGACCACGACCGAGAGAAGGAAGCTGGAGGAGC
GTGGCCGTGGAAGAGGATCACGTGGAGGTGGAGAAAGGCAGGAATGAGGA
GGGGGGGGAGGTGGCCAGGCGGTTGGTGGACTTGCGTGACGACATGATGT
TTATGAGATGCTTGCAATATATTTGAATTGTTGGGCTTATAGACAAGCGG
TGTAAAGAATGCTTGGCCTGTGTTTATACATATACATATACATAAATATT
TTGATCCGACGTGCAAATATACATGCACTCCTGTCGGTTTGAGGAGAGCG
ATACCGTGAATGAGATATTTGAATGCAAAAACAATGAGGGAAGATGTAGA
TTCTGGATTGCAGCGATGCCAGGAAAGAGGGGCGGAGAGGACTAAAGACG
GAACATGTCGAAAAAGATGTACCACAGAATAAGGATTACTTCCATTTTCA
TGATTAGACGGGTTTAAAGCTTTCTAGCCGCGTATGCACGGTGAAAAAGG
AATAAGGGGAAAGGCAAAT
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Coding sequence (CDS) from alignment at scaffold_1:1065821..1067239+

>mRNA_1607 ID=mRNA_1607|Name=jgi.p|Nanoce1779_2|572867|organism=Nannochloropsis oceanica|type=CDS|length=1794bp|location=Sequence derived from alignment at scaffold_1:1065821..1067239+ (Nannochloropsis oceanica)
ATGTCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCTGAAGCTTC
CACTGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGCCGCCCAAC
GCAACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATGGAGGCAGA
ATAATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATTCACCACGC
AGTGAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGAACATGGAG
CGGACGTGAATGCAATTGATCGCGACGGCGAGACTCCCCTTTGTTGGTGC
GCAACCATCGCTTCCTTCTCTGTCCGCACGAAAGCGCTCCTCCGACTTCT
CGTCGACGCAGGGGCTGACCCCAATTGGCAAGACCTCTATGGCTATACTC
CTCTCACACACGCTGTCGTGCGCGGCTCAGTCGACGCCACCCGTCGGGCC
CGCGTTCAAGCGCTGCTTGAATTAGGCGCGGACCCGCGCGTGAGGGACTA
TGACGGAAAGGAACCGCTGGATTACCTAGGAATGAACACAGATGATGGAT
GCATATGGACGGCAGCCTTACCAGAGAATGGGCGGGAGATGGAACGCTGT
CGGGCATTGTTGAAAGATGAGGTGTTTAGGAGGGAAGTGCGTGAGGTTTT
GATGGAGGCGCGTCGTCGTTTTTTCAACGTGGCTAAAGACCAAAACGAAG
GGAATGATCATGAAAGAAAAGGCATAGAAGAGATGAAGAGACCACGACCG
AGAGAAGGAAGCTGGAGGAGCGTGGCCGTGGAAGAGGATCACGTGGAGGT
GGAGAAAGGCAGGAATGAGGAGGGGGGGGAGGTGGCCAGGCGGTTGGTGG
ACTTGCGTGACGACATGATGTTTATGAGATGCTTGCAATATATTTGAATG
TCGGCCGCCGCTGTAGTCTGTGCTGCCGCAGAGGCCCCTGAAGCTTCCAC
TGCTCTGGCTTCCACCATCTACACCAAGGCTTTAGCGGCCGCCCAACGCA
ACGATATAAGATTGTTGACAGGGATCTGGGAGAAGCATGGAGGCAGAATA
ATTACCGAACCACTTCCTGAGGGAAGCGGGTACATCATTCACCACGCAGT
GAAGCTTCTGCGTGTGAAGTCTGTCATTTGGCTTCTGGAACATGGAGCGG
ACGTGAATGCAATTGATCGCGACGGCGAGACTCCCCTTTGTTGGTGCGCA
ACCATCGCTTCCTTCTCTGTCCGCACGAAAGCGCTCCTCCGACTTCTCGT
CGACGCAGGGGCTGACCCCAATTGGCAAGACCTCTATGGCTATACTCCTC
TCACACACGCTGTCGTGCGCGGCTCAGTCGACGCCACCCGTCGGGCCCGC
GTTCAAGCGCTGCTTGAATTAGGCGCGGACCCGCGCGTGAGGGACTATGA
CGGAAAGGAACCGCTGGATTACCTAGGAATGAACACAGATGATGGATGCA
TATGGACGGCAGCCTTACCAGAGAATGGGCGGGAGATGGAACGCTGTCGG
GCATTGTTGAAAGATGAGGTGTTTAGGAGGGAAGTGCGTGAGGTTTTGAT
GGAGGCGCGTCGTCGTTTTTTCAACGTGGCTAAAGACCAAAACGAAGGGA
ATGATCATGAAAGAAAAGGCATAGAAGAGATGAAGAGACCACGACCGAGA
GAAGGAAGCTGGAGGAGCGTGGCCGTGGAAGAGGATCACGTGGAGGTGGA
GAAAGGCAGGAATGAGGAGGGGGGGGAGGTGGCCAGGCGGTTGGTGGACT
TGCGTGACGACATGATGTTTATGAGATGCTTGCAATATATTTGA
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Synonyms
Publications