jgi.p|Nanoce1779_2|572865, mRNA_1606 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572865
Unique Name	mRNA_1606
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2199
Alignment location	scaffold_1:1063680..1065878 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572951
Track	FilteredModels2
ProteinId	572865

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1063680..1065878 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572865	gene_1606	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572865	mRNA_1606-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1606	CDS_1606	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1063680..1065878+
coding sequence from alignment at scaffold_1:1063680..1065878+

mRNA sequence

>mRNA_1606 ID=mRNA_1606|Name=jgi.p|Nanoce1779_2|572865|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp
CAGCATCTCTGATCTCTTTGAAAGAGCCAGCAGTGCCAGCAGCAGCTACT
GCTGCAGCAACAAACTCTGTGGTGGGGACGGCAAGGGCGGCGACGGAAGG
TGCAACAGCAGCAGCAGCGACAGCAACCAAGGGATCGAGGAAACGCAAGG
CCCCCGTCCAACTCCTGTCGAATGCGAAGGAGGTAAAGACTGTACCAGTA
CCACCCGCACCCTTAGGAGTAGCACCTGCAGCAGCTGAAGGGGCGGGAAA
GCCGACTCCTGCCGCGGTTGCAGCCCTGTTTGATGAGGCCGAGGACGAAG
AGGGCTCGAGGGATGGGGACGAGGAAGATCTGGAGATCGACGACGACGCC
CTGAACGATTCCGACGATGACTCAGCAGCAGCATCATCGGCCATGGCAGC
ATCAACAGCAGCAGCAGCGGCGGTGGCGGCAGCAAGAGAGGACGGAGAAG
ACGCGGATAATGTACTTTGCGACGTGTGTGGGGGTGGAGAGAGCTTGGAA
GACAATATGGTCATCTTTTGCGACGGGTGTGATGTCGCCGTCCACCAGTT
CTGCTACGGCATTCCCAAAGTCCTGAAAGGCATGTGGTTTTGCGATAAGT
GCAAGTGGCACAAGGCCGCTTTCAAGGCAAGCCAGTCCTCCGCCTGCTCT
GCAACAGCTGCTGCTTCTGCCGCAGGTGGTGCCCACCGTCCTTCCCCTCC
TTCTCCAATCACATGTCACTTTTGCTTGCAGTCCAACGGGGCCATGAAGA
GCTGTAAGGATAAGACACTCTGGGGGCACGTGACGTGCGTGTGGTACGAC
CCCAATGCCTTCTTCAAAGACCCCACCCGGATGGCACCTATTGTTTTGCG
TCGGGTCAAGCAGCAGGATAAGGGATGTATGTGCGGGATATGTAAGGAGA
AAGGGGGGTTGATCATCCCTTGTCGGTGGCCGGAGTGTCGGACAAAAGTG
CACACGAGGTGCGCGCAGCGGGGGGGGGGTTATTTGAAGATGGAGGCCAT
GTTTGGGGGGTTGCTGACGGAGGTTTATTGCCGAGAGCACCAGGAAAAGA
GGCTATGTCCGCTGGCGCTGGTGGAGCTGGCGAAAAAACGGGTGGAAGGG
ACAGAATTGAAGGGGGCGGTGGTGGCGATGGAGGAGAGGGTCAAGGAGGA
TGGTGTGCCATATGCGAGTGTGGAGATGTTTGCCGAGGACTTTACGCCAG
TGATTGAGATGCTGGGGGGGCAGGGACGGTCGAAGGCGGATAGGGCATTG
GCGGCCGAGTTGATGCTTAGGCTGGCGGCGCTGAAGAGGAGCTTGAATGC
GGCAAACAAGATGCCGGCTCAAAATGGGGGGAAAGAGGGGGGGGGAGGGA
AGCTTGAACGGTGAGGGACCGTTTGTGTGTGTAATTAAGTCATATGAAAT
ACGGAAGCAATTACACGCGAGATACAAAGAAAGAGAGGTGGGAACATAAG
CGGCGGGAGAGAGAAGTAACAGAGAAAAGGAACTGTGCTTAGAGATGCGA
GCGAAATTTACTTGTCTGACTGAATGTGTCTGGTGTCTGATGGTTTTTGG
GTGTCCATCACGATCGATAGAAAAAAAATGAAAGTAGTTGTTTAAATCAT
TGCTTCACAATGAAGCCCAATAACACACTTTCCGTCAAGAGATAAGTGCA
CTGAATAACCCAACAAACGAAACCTGCCCAAAGTACATGTGTGCAAGCCA
AGTAAATCCCAGGGGTAACGTTGAAAAGTATAACCAAGTGTGACCCGATG
AAACAATTTAAGGGATAGGTAGGAGGGAAATAACAAGAATTTAAGAATGA
TATTCATTCACTATTGAACATTTTCAATAATTTGTTCATTGAGAATTGTG
TCTCCCGTGCCTTGAGTTTGCTTCATGTTCGTCAAGCCGTTTTCCTTGTA
AGCACATCTTATCAGTGCCCTTTTCTGTTTTCACTGCCTTTCAATCCAGC
ACCCTCCTGCCACTAAATCAACCGCCTGTAGGGTTTTCTCCCTTGCTATT
TGTAATAACAATGTATGTCACCTGCATTGCCCTTTTTCATTGCCGATTAT
CTCTTTTCAGGCTCGTATAGTGTTGGGGGGGTACATGCACACGTGCGTAT
TAAGCCTCCGATCTAACAATCGCCCTTTCCACACACGCGGCACAGCGACA
GGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGAGCAGCCAC

protein sequence of jgi.p|Nanoce1779_2|572865

>mRNA_1606-protein ID=mRNA_1606-protein|Name=jgi.p|Nanoce1779_2|572865|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MAASTAAAAAVAAAREDGEDADNVLCDVCGGGESLEDNMVIFCDGCDVAV
HQFCYGIPKVLKGMWFCDKCKWHKAAFKASQSSACSATAAASAAGGAHRP
SPPSPITCHFCLQSNGAMKSCKDKTLWGHVTCVWYDPNAFFKDPTRMAPI
VLRRVKQQDKGCMCGICKEKGGLIIPCRWPECRTKVHTRCAQRGGGYLKM
EAMFGGLLTEVYCREHQEKRLCPLALVELAKKRVEGTELKGAVVAMEERV
KEDGVPYASVEMFAEDFTPVIEMLGGQGRSKADRALAAELMLRLAALKRS
LNAANKMPAQNGGKEGGGGKLER*

mRNA from alignment at scaffold_1:1063680..1065878+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1606 ID=mRNA_1606|Name=jgi.p|Nanoce1779_2|572865|organism=Nannochloropsis oceanica|type=mRNA|length=2199bp|location=Sequence derived from alignment at scaffold_1:1063680..1065878+ (Nannochloropsis oceanica)
CAGCATCTCTGATCTCTTTGAAAGAGCCAGCAGTGCCAGCAGCAGCTACT
GCTGCAGCAACAAACTCTGTGGTGGGGACGGCAAGGGCGGCGACGGAAGG
TGCAACAGCAGCAGCAGCGACAGCAACCAAGGGATCGAGGAAACGCAAGG
CCCCCGTCCAACTCCTGTCGAATGCGAAGGAGGTAAAGACTGTACCAGTA
CCACCCGCACCCTTAGGAGTAGCACCTGCAGCAGCTGAAGGGGCGGGAAA
GCCGACTCCTGCCGCGGTTGCAGCCCTGTTTGATGAGGCCGAGGACGAAG
AGGGCTCGAGGGATGGGGACGAGGAAGATCTGGAGATCGACGACGACGCC
CTGAACGATTCCGACGATGACTCAGCAGCAGCATCATCGGCCATGGCAGC
ATCAACAGCAGCAGCAGCGGCGGTGGCGGCAGCAAGAGAGGACGGAGAAG
ACGCGGATAATGTACTTTGCGACGTGTGTGGGGGTGGAGAGAGCTTGGAA
GACAATATGGTCATCTTTTGCGACGGGTGTGATGTCGCCGTCCACCAGTT
CTGCTACGGCATTCCCAAAGTCCTGAAAGGCATGTGGTTTTGCGATAAGT
GCAAGTGGCACAAGGCCGCTTTCAAGGCAAGCCAGTCCTCCGCCTGCTCT
GCAACAGCTGCTGCTTCTGCCGCAGGTGGTGCCCACCGTCCTTCCCCTCC
TTCTCCAATCACATGTCACTTTTGCTTGCAGTCCAACGGGGCCATGAAGA
GCTGTAAGGATAAGACACTCTGGGGGCACGTGACGTGCGTGTGGTACGAC
CCCAATGCCTTCTTCAAAGACCCCACCCGGATGGCACCTATTGTTTTGCG
TCGGGTCAAGCAGCAGGATAAGGGATGTATGTGCGGGATATGTAAGGAGA
AAGGGGGGTTGATCATCCCTTGTCGGTGGCCGGAGTGTCGGACAAAAGTG
CACACGAGGTGCGCGCAGCGGGGGGGGGGTTATTTGAAGATGGAGGCCAT
GTTTGGGGGGTTGCTGACGGAGGTTTATTGCCGAGAGCACCAGGAAAAGA
GGCTATGTCCGCTGGCGCTGGTGGAGCTGGCGAAAAAACGGGTGGAAGGG
ACAGAATTGAAGGGGGCGGTGGTGGCGATGGAGGAGAGGGTCAAGGAGGA
TGGTGTGCCATATGCGAGTGTGGAGATGTTTGCCGAGGACTTTACGCCAG
TGATTGAGATGCTGGGGGGGCAGGGACGGTCGAAGGCGGATAGGGCATTG
GCGGCCGAGTTGATGCTTAGGCTGGCGGCGCTGAAGAGGAGCTTGAATGC
GGCAAACAAGATGCCGGCTCAAAATGGGGGGAAAGAGGGGGGGGGAGGGA
AGCTTGAACGGTGAGGGACCGTTTGTGTGTGTAATTAAGTCATATGAAAT
ACGGAAGCAATTACACGCGAGATACAAAGAAAGAGAGGTGGGAACATAAG
CGGCGGGAGAGAGAAGTAACAGAGAAAAGGAACTGTGCTTAGAGATGCGA
GCGAAATTTACTTGTCTGACTGAATGTGTCTGGTGTCTGATGGTTTTTGG
GTGTCCATCACGATCGATAGAAAAAAAATGAAAGTAGTTGTTTAAATCAT
TGCTTCACAATGAAGCCCAATAACACACTTTCCGTCAAGAGATAAGTGCA
CTGAATAACCCAACAAACGAAACCTGCCCAAAGTACATGTGTGCAAGCCA
AGTAAATCCCAGGGGTAACGTTGAAAAGTATAACCAAGTGTGACCCGATG
AAACAATTTAAGGGATAGGTAGGAGGGAAATAACAAGAATTTAAGAATGA
TATTCATTCACTATTGAACATTTTCAATAATTTGTTCATTGAGAATTGTG
TCTCCCGTGCCTTGAGTTTGCTTCATGTTCGTCAAGCCGTTTTCCTTGTA
AGCACATCTTATCAGTGCCCTTTTCTGTTTTCACTGCCTTTCAATCCAGC
ACCCTCCTGCCACTAAATCAACCGCCTGTAGGGTTTTCTCCCTTGCTATT
TGTAATAACAATGTATGTCACCTGCATTGCCCTTTTTCATTGCCGATTAT
CTCTTTTCAGGCTCGTATAGTGTTGGGGGGGTACATGCACACGTGCGTAT
TAAGCCTCCGATCTAACAATCGCCCTTTCCACACACGCGGCACAGCGACA
GGGCCGCAAAGAGGGGAGCTTCGTGGTGGACGAGGCCCTGAGCAGCCAC

Coding sequence (CDS) from alignment at scaffold_1:1063680..1065878+

>mRNA_1606 ID=mRNA_1606|Name=jgi.p|Nanoce1779_2|572865|organism=Nannochloropsis oceanica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_1:1063680..1065878+ (Nannochloropsis oceanica)
ATGGCAGCATCAACAGCAGCAGCAGCGGCGGTGGCGGCAGCAAGAGAGGA
CGGAGAAGACGCGGATAATGTACTTTGCGACGTGTGTGGGGGTGGAGAGA
GCTTGGAAGACAATATGGTCATCTTTTGCGACGGGTGTGATGTCGCCGTC
CACCAGTTCTGCTACGGCATTCCCAAAGTCCTGAAAGGCATGTGGTTTTG
CGATAAGTGCAAGTGGCACAAGGCCGCTTTCAAGGCAAGCCAGTCCTCCG
CCTGCTCTGCAACAGCTGCTGCTTCTGCCGCAGGTGGTGCCCACCGTCCT
TCCCCTCCTTCTCCAATCACATGTCACTTTTGCTTGCAGTCCAACGGGGC
CATGAAGAGCTGTAAGGATAAGACACTCTGGGGGCACGTGACGTGCGTGT
GGTACGACCCCAATGCCTTCTTCAAAGACCCCACCCGGATGGCACCTATT
GTTTTGCGTCGGGTCAAGCAGCAGGATAAGGGATGTATGTGCGGGATATG
TAAGGAGAAAGGGGGGTTGATCATCCCTTGTCGGTGGCCGGAGTGTCGGA
CAAAAGTGCACACGAGGTGCGCGCAGCGGGGGGGGGGTTATTTGAAGATG
GAGGCCATGTTTGGGGGGTTGCTGACGGAGGTTTATTGCCGAGAGCACCA
GGAAAAGAGGCTATGTCCGCTGGCGCTGGTGGAGCTGGCGAAAAAACGGG
TGGAAGGGACAGAATTGAAGGGGGCGGTGGTGGCGATGGAGGAGAGGGTC
AAGGAGGATGGTGTGCCATATGCGAGTGTGGAGATGTTTGCCGAGGACTT
TACGCCAGTGATTGAGATGCTGGGGGGGCAGGGACGGTCGAAGGCGGATA
GGGCATTGGCGGCCGAGTTGATGCTTAGGCTGGCGGCGCTGAAGAGGAGC
TTGAATGCGGCAAACAAGATGCCGGCTCAAAATGGGGGGAAAGAGGGGGG
GGGAGGGAAGCTTGAACGGTGA

Synonyms

Publications