jgi.p|Nanoce1779_2|626921, mRNA_1604 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|626921
Unique NamemRNA_1604
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length544
Alignment locationscaffold_1:1056496..1057142 -

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Properties
Property NameValue
TranscriptId627007
TrackFilteredModels2
ProteinId626921
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1056496..1057142 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626921gene_1604Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|626921mRNA_1604-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1604CDS_1604Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1604 ID=mRNA_1604|Name=jgi.p|Nanoce1779_2|626921|organism=Nannochloropsis oceanica|type=mRNA|length=544bp
AGCGGTCAGTTCAAGTGAACTGTCCTCGCGACGACAAAAGTACCGCAAGC
CGAGAACTGACTGCTGTTACTATCACTGCTACTGCTCTCCTTCATGTCGT
CGAATAAGCTCTTCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTC
CTGCTGCTTCTGAGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGG
GCCATCTGATGAAGTGCAACAGCCACCGCGACGGCAAAAGGAGCTTCACG
GCCACCGGCAGGTGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCAT
ATAGACCCGCACATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGT
TGCGCCCATGTACAACTCGCTGGGGCCCTCGCATGTCGCCGCCATGGGTG
GGTCTTTTGATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGTAGGCCCT
GGCTCTCTTACCATGGGCATCGTAGTCAAAAATAAAGTGGTGGAGAGAGT
GCCTGGTGGCGATCAAGATGGAGACCGCGGAAAGTAATAGCAAG
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protein sequence of jgi.p|Nanoce1779_2|626921

>mRNA_1604-protein ID=mRNA_1604-protein|Name=jgi.p|Nanoce1779_2|626921|organism=Nannochloropsis oceanica|type=polypeptide|length=148bp
MSSNKLFCFASLVPFVAVVLLLLSLTKATTAKSFRGPSDEVQQPPRRQKE
LHGHRQVSELQEYAAQSGHIDPHIANGHVADNGGMVAPMYNSLGPSHVAA
MGGSFDALANPEGYGGVGPGSLTMGIVVKNKVVERVPGGDQDGDRGK*
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mRNA from alignment at scaffold_1:1056496..1057142-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1604 ID=mRNA_1604|Name=jgi.p|Nanoce1779_2|626921|organism=Nannochloropsis oceanica|type=mRNA|length=647bp|location=Sequence derived from alignment at scaffold_1:1056496..1057142- (Nannochloropsis oceanica)
AGCGGTCAGTTCAAGTGAACTGTCCTCGCGACGACAAAAGTACCGCAAGC
CGAGAACTGACTGCTGTTACTATCACTGCTACTGCTCTCCTTCATGTCGT
CGAATAAGCTCTTCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTC
CTGCTGCTTCTGAGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGG
GCCATCTGATGAAGTGCAACAGCCACCGCGACGGCAAAAGGAGCTTCACG
GCCACCGGCAGGTGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCAT
ATAGACCCGCACATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGT
TGCGCCCATGTACAACTCGCTGGGGCCCTCGCATGTCGGTACGTGTGAGT
ATTTGTTGACATATAAAAGTACCTGACAGAGACACGACTAGAAAAGGTAA
GAAGGATTCTCACCTGGTTTCCTTCTCCTTCACAATACAAGCCGCCATGG
GTGGGTCTTTTGATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGTAGGC
CCTGGCTCTCTTACCATGGGCATCGTAGTCAAAAATAAAGTGGTGGAGAG
AGTGCCTGGTGGCGATCAAGATGGAGACCGCGGAAAGTAATAGCAAG
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Coding sequence (CDS) from alignment at scaffold_1:1056496..1057142-

>mRNA_1604 ID=mRNA_1604|Name=jgi.p|Nanoce1779_2|626921|organism=Nannochloropsis oceanica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_1:1056496..1057142- (Nannochloropsis oceanica)
CCGCCATGGGTGGGTCTTTTGATGCCTTGGCGAATCCTGAAGGGTATGGT
GGCGTAGGCCCTGGCTCTCTTACCATGGGCATCGTAGTCAAAAATAAAGT
GGTGGAGAGAGTGCCTGGTGGCGATCAAGATGGAGACCGCGGAAAGTAAA
TGTCGTCGAATAAGCTCTTCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCT
GTGGTCCTGCTGCTTCTGAGCCTAACCAAAGCCACAACCGCCAAAAGCTT
CCGAGGGCCATCTGATGAAGTGCAACAGCCACCGCGACGGCAAAAGGAGC
TTCACGGCCACCGGCAGGTGTCAGAGCTACAAGAATATGCCGCGCAAAGC
GGTCATATAGACCCGCACATCGCAAATGGACACGTAGCCGACAATGGAGG
CATGGTTGCGCCCATGTACAACTCGCTGGGGCCCTCGCATGTCGCCGCCA
TGGGTGGGTCTTTTGATGCCTTGGCGAATCCTGAAGGGTATGGTGGCGTA
GGCCCTGGCTCTCTTACCATGGGCATCGTAGTCAAAAATAAAGTGGTGGA
GAGAGTGCCTGGTGGCGATCAAGATGGAGACCGCGGAAAGTAAATGTCGT
CGAATAAGCTCTTCTGCTTTGCCAGCTTGGTGCCTTTCGTAGCTGTGGTC
CTGCTGCTTCTGAGCCTAACCAAAGCCACAACCGCCAAAAGCTTCCGAGG
GCCATCTGATGAAGTGCAACAGCCACCGCGACGGCAAAAGGAGCTTCACG
GCCACCGGCAGGTGTCAGAGCTACAAGAATATGCCGCGCAAAGCGGTCAT
ATAGACCCGCACATCGCAAATGGACACGTAGCCGACAATGGAGGCATGGT
TGCGCCCATGTACAACTCGCTGGGGCCCTCGCATGTCG
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Synonyms
Publications