jgi.p|Nanoce1779_2|572847, mRNA_1601 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|572847
Unique NamemRNA_1601
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1621
Alignment locationscaffold_1:1050167..1051872 -

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Properties
Property NameValue
TranscriptId572933
TrackFilteredModels2
ProteinId572847
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1050167..1051872 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572847gene_1601Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|572847mRNA_1601-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1601CDS_1601Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1601 ID=mRNA_1601|Name=jgi.p|Nanoce1779_2|572847|organism=Nannochloropsis oceanica|type=mRNA|length=1621bp
AACACTAGATATAAGATGAAAATTTTCATCATTCTTGCCGTCCTCACTGC
CGCCTCAATGGTAGAAGATGTACAAGCATTTATCCTGCGACCGTGCCTGT
CCTGCGGGACATACCAACCTCAACAATCCCGCAAGCGTCTTGCAGTCACT
ACCCTCGCCTCCCCCTCCACCATCAGCGACACCATTTACGCAGCTTCAAC
GGACCATCATAAAATAATGATCCTGGGTGGGGGGACCGGCGGGTGCGGTG
TGGCGGCCCAGTTGCTCAACGAGGGTGTGCTGGCCAAAGACATCTGCATT
CTGGAGCCCGCATCAACACATTACTATCAGCCGCTGTGGACCATGGTTGG
TGCCGGCATATTCGATGTGGCTGTGTCCGCTCGGCCAATGTCTAGCACTA
TCCCAAACGGCGTCACGTGGCTCAGAGACTCCGCTATTAAAGTGGCACCT
GACGATAACCAGGTGCAATGCGCCAGCGGGCGGAAGCTTTCGTATGACTA
TTTGGTTGTGGCGACCGGCCTGCAATGCGACTGGCATAAGGTCCCGGGAC
TGGCAGAGGCCTTAGTCGACCATGAAAAGACGGGTGTTTGCTCCAATTAC
CATCCACAGTACGCTCAAAATACCTGGCGCGTTTTGGAAGGCCTGCGAAA
CGGCAGCGCCCTCTTCACCCAGCCCAAGACGCCTGTCAAGTGTGGAGGCG
CTCCGCAAAAAATCATGTGGCTCACAGACGATTACTTGCGCCGGCAAAAC
CGCCGAGGAGATGTGGATATTCATTTTGTTTTGCCTCAAAAGGTCCACTT
TGGCGTCTCTAAGTACGCAGAGGTGCTGAAAACCGAAGCCACGACCCGGG
ATATAGACTTCATGTTTGAGACGACGCTGGTTTCTGTGGATGGAGTGCAG
CACCGAGCGACCTTCCGACGCCTTTCTGATGGGAGCGAGTTCGAGTTGCC
CTTTGCCATGCTTCATGTGACCCCTCCCATGTCCGCACCGGACTTCCTCA
AAGGCAGTCCTCTGGCCAATGAGCAAGGTTTTGTGGCGGTTGACAAATAT
ACGACTCAGCACATCACCTACCCCAACGTTTTTTCCCTCGGCGACTCCTC
CTCCTTACCCACCTCCAAGACCATGGCGGCCATCACCGGCGAAGCACCGG
TATTAACCCACAACCTTTTACGTGTCATGCAAGGAAAGCGACCCACGGCC
GAGTACGACGGGTTCACTTCATGTCCGATTGTTTTGGGTTATGGGAAGCT
TTTGATGACAGAGTTTGTGTATGATTGCATTCCACAGGAATCCTTCACCA
AGATCCCTTTGCCGTTTTTGGATCAGGGGAAGCCCTCATACTTTTATTTT
CTCGTGAAAAAATACGTGTTCCCCTTTGTGTACTGGAATTTGTTTATGAA
GGGAAGATGGTTTGGCAGCAAATTAGTGTTTAAGCCCGACTTCTCCGAGG
TGGACCGCCGGGCGGACGAAGAGGACAAAAAGAATGCTGTGGCGAGAGGA
CGCTTGGGCGAGAAGTTTTAGGAGAGAAAGAGAGAGCGGTGTTGCTTCTT
TATGGCATTATGTACATAGCCGAGGACAGGAACGAGTCAAGGAAATAGGC
AGCTCATAGTTAATGCAAGAC
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protein sequence of jgi.p|Nanoce1779_2|572847

>mRNA_1601-protein ID=mRNA_1601-protein|Name=jgi.p|Nanoce1779_2|572847|organism=Nannochloropsis oceanica|type=polypeptide|length=502bp
MKIFIILAVLTAASMVEDVQAFILRPCLSCGTYQPQQSRKRLAVTTLASP
STISDTIYAASTDHHKIMILGGGTGGCGVAAQLLNEGVLAKDICILEPAS
THYYQPLWTMVGAGIFDVAVSARPMSSTIPNGVTWLRDSAIKVAPDDNQV
QCASGRKLSYDYLVVATGLQCDWHKVPGLAEALVDHEKTGVCSNYHPQYA
QNTWRVLEGLRNGSALFTQPKTPVKCGGAPQKIMWLTDDYLRRQNRRGDV
DIHFVLPQKVHFGVSKYAEVLKTEATTRDIDFMFETTLVSVDGVQHRATF
RRLSDGSEFELPFAMLHVTPPMSAPDFLKGSPLANEQGFVAVDKYTTQHI
TYPNVFSLGDSSSLPTSKTMAAITGEAPVLTHNLLRVMQGKRPTAEYDGF
TSCPIVLGYGKLLMTEFVYDCIPQESFTKIPLPFLDQGKPSYFYFLVKKY
VFPFVYWNLFMKGRWFGSKLVFKPDFSEVDRRADEEDKKNAVARGRLGEK
F*
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mRNA from alignment at scaffold_1:1050167..1051872-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1601 ID=mRNA_1601|Name=jgi.p|Nanoce1779_2|572847|organism=Nannochloropsis oceanica|type=mRNA|length=1706bp|location=Sequence derived from alignment at scaffold_1:1050167..1051872- (Nannochloropsis oceanica)
AACACTAGATATAAGATGAAAATTTTCATCATTCTTGCCGTCCTCACTGC
CGCCTCAATGGTAGAAGATGTACAAGCATTTATCCTGCGACCGTGCCTGT
CCTGCGGGACATACCAACCTCAACAATCCCGCAAGCGTCTTGCAGTCACT
ACCCTCGCCTCCCCCTCCACCATCAGCGACACCATTTACGCAGCTTCAAC
GGACCATCATAAAATAATGATCCTGGGTGGGGGGACCGGCGGGTGCGGTG
TGGCGGCCCAGTTGCTCAACGAGGGTGTGCTGGCCAAAGACATCTGCATT
CTGGAGCCCGCATCAACACATTACTATCAGCCGCTGTGGACCATGGTTGG
TGCCGGCATATTCGATGTGGCTGTGTCCGCTCGGCCAATGTCTAGCACTA
TCCCAAACGGCGTCACGTGGCTCAGAGACTCCGCTATTAAAGTGGCACCT
GACGATAACCAGGTGCAATGCGCCAGCGGGCGGAAGCTTTCGTATGACTA
TTTGGTTGTGGCGACCGGCCTGCAATGCGACTGGCATAAGGTCCCGGGAC
TGGCAGAGGCCTTAGTCGACCATGAAAAGACGGGTGTTTGCTCCAATTAC
CATCCACAGTACGCTCAAAATACCTGGCGCGTTTTGGAAGGCCTGCGAAA
CGGCAGCGCCCTCTTCACCCAGCCCAAGACGCCTGTCAAGTGTGGAGGTG
AGAAATTTAGTATCTATCTCTCAATTTGCTGATGAACGATGAAGATTCTT
CACACCATCATTCCTTCACCATGCACAAGCAGGCGCTCCGCAAAAAATCA
TGTGGCTCACAGACGATTACTTGCGCCGGCAAAACCGCCGAGGAGATGTG
GATATTCATTTTGTTTTGCCTCAAAAGGTCCACTTTGGCGTCTCTAAGTA
CGCAGAGGTGCTGAAAACCGAAGCCACGACCCGGGATATAGACTTCATGT
TTGAGACGACGCTGGTTTCTGTGGATGGAGTGCAGCACCGAGCGACCTTC
CGACGCCTTTCTGATGGGAGCGAGTTCGAGTTGCCCTTTGCCATGCTTCA
TGTGACCCCTCCCATGTCCGCACCGGACTTCCTCAAAGGCAGTCCTCTGG
CCAATGAGCAAGGTTTTGTGGCGGTTGACAAATATACGACTCAGCACATC
ACCTACCCCAACGTTTTTTCCCTCGGCGACTCCTCCTCCTTACCCACCTC
CAAGACCATGGCGGCCATCACCGGCGAAGCACCGGTATTAACCCACAACC
TTTTACGTGTCATGCAAGGAAAGCGACCCACGGCCGAGTACGACGGGTTC
ACTTCATGTCCGATTGTTTTGGGTTATGGGAAGCTTTTGATGACAGAGTT
TGTGTATGATTGCATTCCACAGGAATCCTTCACCAAGATCCCTTTGCCGT
TTTTGGATCAGGGGAAGCCCTCATACTTTTATTTTCTCGTGAAAAAATAC
GTGTTCCCCTTTGTGTACTGGAATTTGTTTATGAAGGGAAGATGGTTTGG
CAGCAAATTAGTGTTTAAGCCCGACTTCTCCGAGGTGGACCGCCGGGCGG
ACGAAGAGGACAAAAAGAATGCTGTGGCGAGAGGACGCTTGGGCGAGAAG
TTTTAGGAGAGAAAGAGAGAGCGGTGTTGCTTCTTTATGGCATTATGTAC
ATAGCCGAGGACAGGAACGAGTCAAGGAAATAGGCAGCTCATAGTTAATG
CAAGAC
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Coding sequence (CDS) from alignment at scaffold_1:1050167..1051872-

>mRNA_1601 ID=mRNA_1601|Name=jgi.p|Nanoce1779_2|572847|organism=Nannochloropsis oceanica|type=CDS|length=3012bp|location=Sequence derived from alignment at scaffold_1:1050167..1051872- (Nannochloropsis oceanica)
GCGCTCCGCAAAAAATCATGTGGCTCACAGACGATTACTTGCGCCGGCAA
AACCGCCGAGGAGATGTGGATATTCATTTTGTTTTGCCTCAAAAGGTCCA
CTTTGGCGTCTCTAAGTACGCAGAGGTGCTGAAAACCGAAGCCACGACCC
GGGATATAGACTTCATGTTTGAGACGACGCTGGTTTCTGTGGATGGAGTG
CAGCACCGAGCGACCTTCCGACGCCTTTCTGATGGGAGCGAGTTCGAGTT
GCCCTTTGCCATGCTTCATGTGACCCCTCCCATGTCCGCACCGGACTTCC
TCAAAGGCAGTCCTCTGGCCAATGAGCAAGGTTTTGTGGCGGTTGACAAA
TATACGACTCAGCACATCACCTACCCCAACGTTTTTTCCCTCGGCGACTC
CTCCTCCTTACCCACCTCCAAGACCATGGCGGCCATCACCGGCGAAGCAC
CGGTATTAACCCACAACCTTTTACGTGTCATGCAAGGAAAGCGACCCACG
GCCGAGTACGACGGGTTCACTTCATGTCCGATTGTTTTGGGTTATGGGAA
GCTTTTGATGACAGAGTTTGTGTATGATTGCATTCCACAGGAATCCTTCA
CCAAGATCCCTTTGCCGTTTTTGGATCAGGGGAAGCCCTCATACTTTTAT
TTTCTCGTGAAAAAATACGTGTTCCCCTTTGTGTACTGGAATTTGTTTAT
GAAGGGAAGATGGTTTGGCAGCAAATTAGTGTTTAAGCCCGACTTCTCCG
AGGTGGACCGCCGGGCGGACGAAGAGGACAAAAAGAATGCTGTGGCGAGA
GGACGCTTGGGCGAGAAGTTTTAGATGAAAATTTTCATCATTCTTGCCGT
CCTCACTGCCGCCTCAATGGTAGAAGATGTACAAGCATTTATCCTGCGAC
CGTGCCTGTCCTGCGGGACATACCAACCTCAACAATCCCGCAAGCGTCTT
GCAGTCACTACCCTCGCCTCCCCCTCCACCATCAGCGACACCATTTACGC
AGCTTCAACGGACCATCATAAAATAATGATCCTGGGTGGGGGGACCGGCG
GGTGCGGTGTGGCGGCCCAGTTGCTCAACGAGGGTGTGCTGGCCAAAGAC
ATCTGCATTCTGGAGCCCGCATCAACACATTACTATCAGCCGCTGTGGAC
CATGGTTGGTGCCGGCATATTCGATGTGGCTGTGTCCGCTCGGCCAATGT
CTAGCACTATCCCAAACGGCGTCACGTGGCTCAGAGACTCCGCTATTAAA
GTGGCACCTGACGATAACCAGGTGCAATGCGCCAGCGGGCGGAAGCTTTC
GTATGACTATTTGGTTGTGGCGACCGGCCTGCAATGCGACTGGCATAAGG
TCCCGGGACTGGCAGAGGCCTTAGTCGACCATGAAAAGACGGGTGTTTGC
TCCAATTACCATCCACAGTACGCTCAAAATACCTGGCGCGTTTTGGAAGG
CCTGCGAAACGGCAGCGCCCTCTTCACCCAGCCCAAGACGCCTGTCAAGT
GTGGAGGCGCTCCGCAAAAAATCATGTGGCTCACAGACGATTACTTGCGC
CGGCAAAACCGCCGAGGAGATGTGGATATTCATTTTGTTTTGCCTCAAAA
GGTCCACTTTGGCGTCTCTAAGTACGCAGAGGTGCTGAAAACCGAAGCCA
CGACCCGGGATATAGACTTCATGTTTGAGACGACGCTGGTTTCTGTGGAT
GGAGTGCAGCACCGAGCGACCTTCCGACGCCTTTCTGATGGGAGCGAGTT
CGAGTTGCCCTTTGCCATGCTTCATGTGACCCCTCCCATGTCCGCACCGG
ACTTCCTCAAAGGCAGTCCTCTGGCCAATGAGCAAGGTTTTGTGGCGGTT
GACAAATATACGACTCAGCACATCACCTACCCCAACGTTTTTTCCCTCGG
CGACTCCTCCTCCTTACCCACCTCCAAGACCATGGCGGCCATCACCGGCG
AAGCACCGGTATTAACCCACAACCTTTTACGTGTCATGCAAGGAAAGCGA
CCCACGGCCGAGTACGACGGGTTCACTTCATGTCCGATTGTTTTGGGTTA
TGGGAAGCTTTTGATGACAGAGTTTGTGTATGATTGCATTCCACAGGAAT
CCTTCACCAAGATCCCTTTGCCGTTTTTGGATCAGGGGAAGCCCTCATAC
TTTTATTTTCTCGTGAAAAAATACGTGTTCCCCTTTGTGTACTGGAATTT
GTTTATGAAGGGAAGATGGTTTGGCAGCAAATTAGTGTTTAAGCCCGACT
TCTCCGAGGTGGACCGCCGGGCGGACGAAGAGGACAAAAAGAATGCTGTG
GCGAGAGGACGCTTGGGCGAGAAGTTTTAGATGAAAATTTTCATCATTCT
TGCCGTCCTCACTGCCGCCTCAATGGTAGAAGATGTACAAGCATTTATCC
TGCGACCGTGCCTGTCCTGCGGGACATACCAACCTCAACAATCCCGCAAG
CGTCTTGCAGTCACTACCCTCGCCTCCCCCTCCACCATCAGCGACACCAT
TTACGCAGCTTCAACGGACCATCATAAAATAATGATCCTGGGTGGGGGGA
CCGGCGGGTGCGGTGTGGCGGCCCAGTTGCTCAACGAGGGTGTGCTGGCC
AAAGACATCTGCATTCTGGAGCCCGCATCAACACATTACTATCAGCCGCT
GTGGACCATGGTTGGTGCCGGCATATTCGATGTGGCTGTGTCCGCTCGGC
CAATGTCTAGCACTATCCCAAACGGCGTCACGTGGCTCAGAGACTCCGCT
ATTAAAGTGGCACCTGACGATAACCAGGTGCAATGCGCCAGCGGGCGGAA
GCTTTCGTATGACTATTTGGTTGTGGCGACCGGCCTGCAATGCGACTGGC
ATAAGGTCCCGGGACTGGCAGAGGCCTTAGTCGACCATGAAAAGACGGGT
GTTTGCTCCAATTACCATCCACAGTACGCTCAAAATACCTGGCGCGTTTT
GGAAGGCCTGCGAAACGGCAGCGCCCTCTTCACCCAGCCCAAGACGCCTG
TCAAGTGTGGAG
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Synonyms
Publications