jgi.p|Nanoce1779_2|572845, mRNA_1600 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572845
Unique Name	mRNA_1600
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1508
Alignment location	scaffold_1:1048300..1050166 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572931
Track	FilteredModels2
ProteinId	572845

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1048300..1050166 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572845	gene_1600	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572845	mRNA_1600-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1600	CDS_1600	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1048300..1050166+
coding sequence from alignment at scaffold_1:1048300..1050166+

mRNA sequence

>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Nanoce1779_2|572845|organism=Nannochloropsis oceanica|type=mRNA|length=1508bp
CTGAAATTACGACAGCAGGCAAGATGTCTGAAGCCGAGGCGAGCGCCCTC
TCCGACAAGTACAAGGGCGTGCTTTACTTGGCCACCGACACCGGTGTAGA
CAAAGGAATTGAGTCAAATGGCTTTACATCGCTGAAAGGCTTACAAGCGC
GCCACATCCCAGTCGACGTCAAGAATGGCCTGTCCCTCCAGCTGGCCGCA
GATTCTCTCAAGGCCTTGGACGAGCTCCCTGCCCCCACCCTGGTCATGTG
CAGTACTGGCGGCCGTGCTTCCGCTGTCAAATGCCTGAAAAAAGCAATGG
AAGAGGGATGGAACCGCGACCAAGCTTTGGCCCATGCCGAATCTGAAAAA
CTGCCCTTTGTCAACAATTGCAACCTGAGGGACTGGGTGCTCGCGACGGT
GGCCGCCAAGCAATACATGGCTGAGCCTCCCCTGATCTTTCGTCCCTTGT
ACGAGGAGACTTCTTGGACCTACACCTACGTCCTGGCCTGCCCTGTCACG
AAAGAGGCGATTTTGATCGATCCTGTGGATGTTACGGTGGACAGAGATTT
GGAAGTGGTGGGGGAAATGGGGTTAAAACTTGTAGGGGCACTGAATACTC
ATTGCCATGCAGACCACGTGACGGGGAGTGGGTTGCTGGCGGAGAAAGTC
CCCGGGTGCAAATCCATGATTGCGGCCGTGTCAGGCGCTAAGGCGTGTGT
GCATTTGAAGCCGGGGGATCGGGTCAAGTTTGGCACTCGATACGTGGAAG
CACGGGCGACACCGGGCCATACGAATGGATGTATGTCTTTCGTGACGGAT
GACATGAGGATGGTCTTCACGGGGGACGCATTATTGATTCGCGGATGCGG
TCGCACGGACTTCCAGCAGGGGAATTCCGAGACGATGTTTGATAGTATTT
GGACGCAGATCTATTCGTTGCCGCAGGAGACGCTGGTTTACCCGGGGCAT
GATTACAAGGGGAGGTTGGTGTCCACGATTGGTGAGGAGAAGAAATACAA
TGCCCGATTGGCGGGCAAGACAAAGGAAGAGTTTGTGGAGATTATGAATA
ATCTGAAGCTGGCGTACCCCAAAAAGATTGATGTGGCCCTGCCGGCGAAC
TTGATGGATGGAATGATGGTAAGCTAAGGGTAGTACGAGGACGGTTGTAG
CATATGGATATAACGGATGGATAGAACGGATGCAAATGGTGGCCGACGGA
TTGCATGAAGACATACCGTTATGGAGAACATGAGTGAATGACTTTGGGCT
TGATGTCGTGGGGGAGGAATCGTGTGTAGCGAGAACGATTAAATTGTAAT
GGGGAGACGGGGATGAAAGGGAAGATCAGAGGAGATCAGAGGCAGTGAAC
CCAATAAGAATGCCATCGGCAATCATATGAAGAAAAAAGTGATATTTTTT
GGTTTGTTTTGAGTGTTTGAATGTTTGAGCTAGATACACGTGGGCACAGC
GGCTGGGGAAACAAAAAACAAAGACAGAAAGAATAAATGTGCAGCATCCG
ATGGGTCT

protein sequence of jgi.p|Nanoce1779_2|572845

>mRNA_1600-protein ID=mRNA_1600-protein|Name=jgi.p|Nanoce1779_2|572845|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MSEAEASALSDKYKGVLYLATDTGVDKGIESNGFTSLKGLQARHIPVDVK
NGLSLQLAADSLKALDELPAPTLVMCSTGGRASAVKCLKKAMEEGWNRDQ
ALAHAESEKLPFVNNCNLRDWVLATVAAKQYMAEPPLIFRPLYEETSWTY
TYVLACPVTKEAILIDPVDVTVDRDLEVVGEMGLKLVGALNTHCHADHVT
GSGLLAEKVPGCKSMIAAVSGAKACVHLKPGDRVKFGTRYVEARATPGHT
NGCMSFVTDDMRMVFTGDALLIRGCGRTDFQQGNSETMFDSIWTQIYSLP
QETLVYPGHDYKGRLVSTIGEEKKYNARLAGKTKEEFVEIMNNLKLAYPK
KIDVALPANLMDGMMVS*

mRNA from alignment at scaffold_1:1048300..1050166+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Nanoce1779_2|572845|organism=Nannochloropsis oceanica|type=mRNA|length=1867bp|location=Sequence derived from alignment at scaffold_1:1048300..1050166+ (Nannochloropsis oceanica)
CTGAAATTACGACAGCAGGCAAGATGTCTGAAGCCGAGGCGAGCGCCCTC
TCCGACAAGTACAAGGGCGTGCTTTACTTGGCCACCGACACCGGTGTAGA
CAAAGGAATTGAGTCAAATGGCTTTACATCGCTGAAAGGCTTACAAGCGC
GCCACATCCCAGTCGACGTCAAGGTAAGGAGCTGGAACGTTACCAGAGGG
AGATTTGGTCGTTAGGGCGGTGGTATGTCCCACCATCATTGGGAGATTGG
TCAGCAGGAATCAAGCCGTCGCTTGAATCTTGCGTCATATGAGGCCTGCC
GATGCAAACTTTTAGGTGAGAAGCCTGTTATAGATTTCTTTGGTGGTGCT
ATTTTGTTTCATGGGGATGGTGGGAGGAACCTAGAGGGAGAAGAGAGACG
CGCATCCTTCGTTCTTTGGCCATGCGTTCCGATTTTCCTCCAGCTCCTCG
GGAATTCATTCTTACGACCATCTCACATTCGGAAACTTAAGTCTACACAA
TAGCTCACCTTCTTGTCCTCCATTATCCACAGAATGGCCTGTCCCTCCAG
CTGGCCGCAGATTCTCTCAAGGCCTTGGACGAGCTCCCTGCCCCCACCCT
GGTCATGTGCAGTACTGGCGGCCGTGCTTCCGCTGTCAAATGCCTGAAAA
AAGCAATGGAAGAGGGATGGAACCGCGACCAAGCTTTGGCCCATGCCGAA
TCTGAAAAACTGCCCTTTGTCAACAATTGCAACCTGAGGGACTGGGTGCT
CGCGACGGTGGCCGCCAAGCAATACATGGCTGAGCCTCCCCTGATCTTTC
GTCCCTTGTACGAGGAGACTTCTTGGACCTACACCTACGTCCTGGCCTGC
CCTGTCACGAAAGAGGCGATTTTGATCGATCCTGTGGATGTTACGGTGGA
CAGAGATTTGGAAGTGGTGGGGGAAATGGGGTTAAAACTTGTAGGGGCAC
TGAATACTCATTGCCATGCAGACCACGTGACGGGGAGTGGGTTGCTGGCG
GAGAAAGTCCCCGGGTGCAAATCCATGATTGCGGCCGTGTCAGGCGCTAA
GGCGTGTGTGCATTTGAAGCCGGGGGATCGGGTCAAGTTTGGCACTCGAT
ACGTGGAAGCACGGGCGACACCGGGCCATACGAATGGATGTATGTCTTTC
GTGACGGATGACATGAGGATGGTCTTCACGGGGGACGCATTATTGATTCG
CGGATGCGGTCGCACGGACTTCCAGCAGGGGAATTCCGAGACGATGTTTG
ATAGTATTTGGACGCAGATCTATTCGTTGCCGCAGGAGACGCTGGTTTAC
CCGGGGCATGATTACAAGGGGAGGTTGGTGTCCACGATTGGTGAGGAGAA
GAAATACAATGCCCGATTGGCGGGCAAGACAAAGGAAGAGTTTGTGGAGA
TTATGAATAATCTGAAGCTGGCGTACCCCAAAAAGATTGATGTGGCCCTG
CCGGCGAACTTGATGGATGGAATGATGGTAAGCTAAGGGTAGTACGAGGA
CGGTTGTAGCATATGGATATAACGGATGGATAGAACGGATGCAAATGGTG
GCCGACGGATTGCATGAAGACATACCGTTATGGAGAACATGAGTGAATGA
CTTTGGGCTTGATGTCGTGGGGGAGGAATCGTGTGTAGCGAGAACGATTA
AATTGTAATGGGGAGACGGGGATGAAAGGGAAGATCAGAGGAGATCAGAG
GCAGTGAACCCAATAAGAATGCCATCGGCAATCATATGAAGAAAAAAGTG
ATATTTTTTGGTTTGTTTTGAGTGTTTGAATGTTTGAGCTAGATACACGT
GGGCACAGCGGCTGGGGAAACAAAAAACAAAGACAGAAAGAATAAATGTG
CAGCATCCGATGGGTCT

Coding sequence (CDS) from alignment at scaffold_1:1048300..1050166+

>mRNA_1600 ID=mRNA_1600|Name=jgi.p|Nanoce1779_2|572845|organism=Nannochloropsis oceanica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_1:1048300..1050166+ (Nannochloropsis oceanica)
ATGTCTGAAGCCGAGGCGAGCGCCCTCTCCGACAAGTACAAGGGCGTGCT
TTACTTGGCCACCGACACCGGTGTAGACAAAGGAATTGAGTCAAATGGCT
TTACATCGCTGAAAGGCTTACAAGCGCGCCACATCCCAGTCGACGTCAAG
AATGGCCTGTCCCTCCAGCTGGCCGCAGATTCTCTCAAGGCCTTGGACGA
GCTCCCTGCCCCCACCCTGGTCATGTGCAGTACTGGCGGCCGTGCTTCCG
CTGTCAAATGCCTGAAAAAAGCAATGGAAGAGGGATGGAACCGCGACCAA
GCTTTGGCCCATGCCGAATCTGAAAAACTGCCCTTTGTCAACAATTGCAA
CCTGAGGGACTGGGTGCTCGCGACGGTGGCCGCCAAGCAATACATGGCTG
AGCCTCCCCTGATCTTTCGTCCCTTGTACGAGGAGACTTCTTGGACCTAC
ACCTACGTCCTGGCCTGCCCTGTCACGAAAGAGGCGATTTTGATCGATCC
TGTGGATGTTACGGTGGACAGAGATTTGGAAGTGGTGGGGGAAATGGGGT
TAAAACTTGTAGGGGCACTGAATACTCATTGCCATGCAGACCACGTGACG
GGGAGTGGGTTGCTGGCGGAGAAAGTCCCCGGGTGCAAATCCATGATTGC
GGCCGTGTCAGGCGCTAAGGCGTGTGTGCATTTGAAGCCGGGGGATCGGG
TCAAGTTTGGCACTCGATACGTGGAAGCACGGGCGACACCGGGCCATACG
AATGGATGTATGTCTTTCGTGACGGATGACATGAGGATGGTCTTCACGGG
GGACGCATTATTGATTCGCGGATGCGGTCGCACGGACTTCCAGCAGGGGA
ATTCCGAGACGATGTTTGATAGTATTTGGACGCAGATCTATTCGTTGCCG
CAGGAGACGCTGGTTTACCCGGGGCATGATTACAAGGGGAGGTTGGTGTC
CACGATTGGTGAGGAGAAGAAATACAATGCCCGATTGGCGGGCAAGACAA
AGGAAGAGTTTGTGGAGATTATGAATAATCTGAAGCTGGCGTACCCCAAA
AAGATTGATGTGGCCCTGCCGGCGAACTTGATGGATGGAATGATGGTAAG
CTAAATGTCTGAAGCCGAGGCGAGCGCCCTCTCCGACAAGTACAAGGGCG
TGCTTTACTTGGCCACCGACACCGGTGTAGACAAAGGAATTGAGTCAAAT
GGCTTTACATCGCTGAAAGGCTTACAAGCGCGCCACATCCCAGTCGACGT
CAAGAATGGCCTGTCCCTCCAGCTGGCCGCAGATTCTCTCAAGGCCTTGG
ACGAGCTCCCTGCCCCCACCCTGGTCATGTGCAGTACTGGCGGCCGTGCT
TCCGCTGTCAAATGCCTGAAAAAAGCAATGGAAGAGGGATGGAACCGCGA
CCAAGCTTTGGCCCATGCCGAATCTGAAAAACTGCCCTTTGTCAACAATT
GCAACCTGAGGGACTGGGTGCTCGCGACGGTGGCCGCCAAGCAATACATG
GCTGAGCCTCCCCTGATCTTTCGTCCCTTGTACGAGGAGACTTCTTGGAC
CTACACCTACGTCCTGGCCTGCCCTGTCACGAAAGAGGCGATTTTGATCG
ATCCTGTGGATGTTACGGTGGACAGAGATTTGGAAGTGGTGGGGGAAATG
GGGTTAAAACTTGTAGGGGCACTGAATACTCATTGCCATGCAGACCACGT
GACGGGGAGTGGGTTGCTGGCGGAGAAAGTCCCCGGGTGCAAATCCATGA
TTGCGGCCGTGTCAGGCGCTAAGGCGTGTGTGCATTTGAAGCCGGGGGAT
CGGGTCAAGTTTGGCACTCGATACGTGGAAGCACGGGCGACACCGGGCCA
TACGAATGGATGTATGTCTTTCGTGACGGATGACATGAGGATGGTCTTCA
CGGGGGACGCATTATTGATTCGCGGATGCGGTCGCACGGACTTCCAGCAG
GGGAATTCCGAGACGATGTTTGATAGTATTTGGACGCAGATCTATTCGTT
GCCGCAGGAGACGCTGGTTTACCCGGGGCATGATTACAAGGGGAGGTTGG
TGTCCACGATTGGTGAGGAGAAGAAATACAATGCCCGATTGGCGGGCAAG
ACAAAGGAAGAGTTTGTGGAGATTATGAATAATCTGAAGCTGGCGTACCC
CAAAAAGATTGATGTGGCCCTGCCGGCGAACTTGATGGATGGAATGATGG
TAAGCTAA

Synonyms

Publications