jgi.p|Nanoce1779_2|231418, mRNA_160 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|231418
Unique Name	mRNA_160
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1452
Alignment location	scaffold_3:407480..408931 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	231504
Track	FilteredModels2
ProteinId	231418

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:407480..408931 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|231418	gene_160	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|231418	mRNA_160-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_160	CDS_160	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:407480..408931+
coding sequence from alignment at scaffold_3:407480..408931+

mRNA sequence

>mRNA_160 ID=mRNA_160|Name=jgi.p|Nanoce1779_2|231418|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp
AAATAATTCTATTTCTGCTCTTTTCTCTGCCGCTCACGCACAAGAGCCAC
AGCCGTTCGCTGTTATCCTCCTATCGCTCGTAAGGCACACGGCGGCAACT
TTTCAAGCACACATTATTTACTAACATAGTCCTCGTTTTACCCCAACGCG
CCATCAACCCACTCCACCACTCCACACTCGACAGGGAGAATGCCAACCTT
CGTCCTTGTGCAATGCTATCGATGCCACGTCTTCATTCCCAACCAAGAGA
CCAAGAACCGCAAATGGGCATGCCGGATGTGTGGGGCCAAGCAAAGCATT
ATCAAAGTCTATGCGAGGACCGACAGCGCCAAGGAGCTCCGTCTAGCCGC
ACAGCAATTAAATGCACAGCACGGCGAAGCGCGGGATCAGCTTCATCAGC
AACGTTCGATGCAGGTCCCTGCGTCGCCTCCTTTGTACGAATGCTATCAA
GGAGGAGGAGGAGAAGAAGGAGAGGTAGAGGAGGAGCTGCGCCACCATAA
CAACTATCATCTTCAGAACCAGCATCAGATGAGCGGGTCTGCGGACGGAT
CCGTTTCGCAAGAGGGTAATGCCCATGGTGGTGGGGGTGGAGGAGGAGAG
GTTGGAAGCCGTTGGGGCGCATTTTTAATAGATACACAGAGAGAAGACGC
ACAAAGTAGCATAAGCGGTAATGGATTCCATGGCGCGAGCTTGATGAGCT
TGGTGAGTGAGGATATGGAGGAGGAAGATGGACGGTTTGTGACGGAGTTG
CCGGCGGCGAGGGAAAGAGGTAAAATAGGAAGAGGAGGAAGAGGAGGAGG
AGGAGGAAAAAGCGGACGGCACGGGGGGCGACGCAAGCGAGGAGGAGGCG
AAGGAGGAAGCGAAGGAAAAGAAAGAGAGGAAAATTGGGGTCATGGACGA
CAAAGACAAGCTCGGAAGCGGGGTGGGGATAGCAACAACGATGAGGAAGA
TGAGGAAGCGATGCGGATCCAAGAGGACAATCGTGGGTACCACAAGCAGC
ACCTGCAGTACCAACAGCACCAGCAGCATGATGGATGGGGTTGGGAGGCC
TCGATGGGGGAAACAAGAGGAGAAGTTGGAAGATATGAGACGGGGGGGGA
AGTGAGTAAGCGTATGCGGTCTTATGATGCTGTAACGGAAAGCAACAAGC
GGCATGTATCTGCTGTGCAGGGAGGAGAGAGAGGAAGAGGAGGAGGAGGA
GGAGGAGCAGCAGCAGCAGCCGCAAGTAGCAACAGGGTTGCGATTAGTAG
CAACAGCCGATGGTCCGCTTTCATGTAAGATAAACAACAAAAAATGTTGA
GACTGAAGCGTGTATAGAGAAGGGAAGGAGGGAGGGAGGATGGGGAAGAC
CAACAGCAATAACAGCAATAGCTGTTTGAGAGGAATATTGCATGAGCGTG
TATGCACAAATTCATAATTTGGAAGAAGAGAAATCCTAATTTAATATAAT
TC

protein sequence of jgi.p|Nanoce1779_2|231418

>mRNA_160-protein ID=mRNA_160-protein|Name=jgi.p|Nanoce1779_2|231418|organism=Nannochloropsis oceanica|type=polypeptide|length=363bp
MPTFVLVQCYRCHVFIPNQETKNRKWACRMCGAKQSIIKVYARTDSAKEL
RLAAQQLNAQHGEARDQLHQQRSMQVPASPPLYECYQGGGGEEGEVEEEL
RHHNNYHLQNQHQMSGSADGSVSQEGNAHGGGGGGGEVGSRWGAFLIDTQ
REDAQSSISGNGFHGASLMSLVSEDMEEEDGRFVTELPAARERGKIGRGG
RGGGGGKSGRHGGRRKRGGGEGGSEGKEREENWGHGRQRQARKRGGDSNN
DEEDEEAMRIQEDNRGYHKQHLQYQQHQQHDGWGWEASMGETRGEVGRYE
TGGEVSKRMRSYDAVTESNKRHVSAVQGGERGRGGGGGGAAAAAASSNRV
AISSNSRWSAFM*

mRNA from alignment at scaffold_3:407480..408931+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_160 ID=mRNA_160|Name=jgi.p|Nanoce1779_2|231418|organism=Nannochloropsis oceanica|type=mRNA|length=1452bp|location=Sequence derived from alignment at scaffold_3:407480..408931+ (Nannochloropsis oceanica)
AAATAATTCTATTTCTGCTCTTTTCTCTGCCGCTCACGCACAAGAGCCAC
AGCCGTTCGCTGTTATCCTCCTATCGCTCGTAAGGCACACGGCGGCAACT
TTTCAAGCACACATTATTTACTAACATAGTCCTCGTTTTACCCCAACGCG
CCATCAACCCACTCCACCACTCCACACTCGACAGGGAGAATGCCAACCTT
CGTCCTTGTGCAATGCTATCGATGCCACGTCTTCATTCCCAACCAAGAGA
CCAAGAACCGCAAATGGGCATGCCGGATGTGTGGGGCCAAGCAAAGCATT
ATCAAAGTCTATGCGAGGACCGACAGCGCCAAGGAGCTCCGTCTAGCCGC
ACAGCAATTAAATGCACAGCACGGCGAAGCGCGGGATCAGCTTCATCAGC
AACGTTCGATGCAGGTCCCTGCGTCGCCTCCTTTGTACGAATGCTATCAA
GGAGGAGGAGGAGAAGAAGGAGAGGTAGAGGAGGAGCTGCGCCACCATAA
CAACTATCATCTTCAGAACCAGCATCAGATGAGCGGGTCTGCGGACGGAT
CCGTTTCGCAAGAGGGTAATGCCCATGGTGGTGGGGGTGGAGGAGGAGAG
GTTGGAAGCCGTTGGGGCGCATTTTTAATAGATACACAGAGAGAAGACGC
ACAAAGTAGCATAAGCGGTAATGGATTCCATGGCGCGAGCTTGATGAGCT
TGGTGAGTGAGGATATGGAGGAGGAAGATGGACGGTTTGTGACGGAGTTG
CCGGCGGCGAGGGAAAGAGGTAAAATAGGAAGAGGAGGAAGAGGAGGAGG
AGGAGGAAAAAGCGGACGGCACGGGGGGCGACGCAAGCGAGGAGGAGGCG
AAGGAGGAAGCGAAGGAAAAGAAAGAGAGGAAAATTGGGGTCATGGACGA
CAAAGACAAGCTCGGAAGCGGGGTGGGGATAGCAACAACGATGAGGAAGA
TGAGGAAGCGATGCGGATCCAAGAGGACAATCGTGGGTACCACAAGCAGC
ACCTGCAGTACCAACAGCACCAGCAGCATGATGGATGGGGTTGGGAGGCC
TCGATGGGGGAAACAAGAGGAGAAGTTGGAAGATATGAGACGGGGGGGGA
AGTGAGTAAGCGTATGCGGTCTTATGATGCTGTAACGGAAAGCAACAAGC
GGCATGTATCTGCTGTGCAGGGAGGAGAGAGAGGAAGAGGAGGAGGAGGA
GGAGGAGCAGCAGCAGCAGCCGCAAGTAGCAACAGGGTTGCGATTAGTAG
CAACAGCCGATGGTCCGCTTTCATGTAAGATAAACAACAAAAAATGTTGA
GACTGAAGCGTGTATAGAGAAGGGAAGGAGGGAGGGAGGATGGGGAAGAC
CAACAGCAATAACAGCAATAGCTGTTTGAGAGGAATATTGCATGAGCGTG
TATGCACAAATTCATAATTTGGAAGAAGAGAAATCCTAATTTAATATAAT
TC

Coding sequence (CDS) from alignment at scaffold_3:407480..408931+

>mRNA_160 ID=mRNA_160|Name=jgi.p|Nanoce1779_2|231418|organism=Nannochloropsis oceanica|type=CDS|length=1089bp|location=Sequence derived from alignment at scaffold_3:407480..408931+ (Nannochloropsis oceanica)
ATGCCAACCTTCGTCCTTGTGCAATGCTATCGATGCCACGTCTTCATTCC
CAACCAAGAGACCAAGAACCGCAAATGGGCATGCCGGATGTGTGGGGCCA
AGCAAAGCATTATCAAAGTCTATGCGAGGACCGACAGCGCCAAGGAGCTC
CGTCTAGCCGCACAGCAATTAAATGCACAGCACGGCGAAGCGCGGGATCA
GCTTCATCAGCAACGTTCGATGCAGGTCCCTGCGTCGCCTCCTTTGTACG
AATGCTATCAAGGAGGAGGAGGAGAAGAAGGAGAGGTAGAGGAGGAGCTG
CGCCACCATAACAACTATCATCTTCAGAACCAGCATCAGATGAGCGGGTC
TGCGGACGGATCCGTTTCGCAAGAGGGTAATGCCCATGGTGGTGGGGGTG
GAGGAGGAGAGGTTGGAAGCCGTTGGGGCGCATTTTTAATAGATACACAG
AGAGAAGACGCACAAAGTAGCATAAGCGGTAATGGATTCCATGGCGCGAG
CTTGATGAGCTTGGTGAGTGAGGATATGGAGGAGGAAGATGGACGGTTTG
TGACGGAGTTGCCGGCGGCGAGGGAAAGAGGTAAAATAGGAAGAGGAGGA
AGAGGAGGAGGAGGAGGAAAAAGCGGACGGCACGGGGGGCGACGCAAGCG
AGGAGGAGGCGAAGGAGGAAGCGAAGGAAAAGAAAGAGAGGAAAATTGGG
GTCATGGACGACAAAGACAAGCTCGGAAGCGGGGTGGGGATAGCAACAAC
GATGAGGAAGATGAGGAAGCGATGCGGATCCAAGAGGACAATCGTGGGTA
CCACAAGCAGCACCTGCAGTACCAACAGCACCAGCAGCATGATGGATGGG
GTTGGGAGGCCTCGATGGGGGAAACAAGAGGAGAAGTTGGAAGATATGAG
ACGGGGGGGGAAGTGAGTAAGCGTATGCGGTCTTATGATGCTGTAACGGA
AAGCAACAAGCGGCATGTATCTGCTGTGCAGGGAGGAGAGAGAGGAAGAG
GAGGAGGAGGAGGAGGAGCAGCAGCAGCAGCCGCAAGTAGCAACAGGGTT
GCGATTAGTAGCAACAGCCGATGGTCCGCTTTCATGTAA

Synonyms

Publications