jgi.p|Nanoce1779_2|575893, mRNA_16 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|575893
Unique NamemRNA_16
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length926
Alignment locationscaffold_3:51689..52929 +

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Properties
Property NameValue
TranscriptId575979
TrackFilteredModels2
ProteinId575893
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:51689..52929 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575893gene_16Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|575893mRNA_16-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_16CDS_16Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_16 ID=mRNA_16|Name=jgi.p|Nanoce1779_2|575893|organism=Nannochloropsis oceanica|type=mRNA|length=926bp
CAGCAGCAGCAGCATCAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAAAGATGAGCAGGCCGTGGTTTGGGCGAGGCTGAGGTATGTT
GAGTGGATAGCTGTATAGGAATGAGACGGGGAGAGAAAGGAATACACAGC
GAACGAAGCAAAGTATGTTATATACATGGGCTTTTTCTCTGAGGGAAGGA
AAAACGCGCCGAAGTTTCACAAGCATACACCGTCCATTCCTCTTTCCTTC
TTGGAGCTCGCTCGTCTCTCAAACCGAAGAGTATCGCCTTACCCCCTCCT
CTTATTCTTCAACTCTGTCCGCAAAATAAAGGTCAATCAACCTCCATGCC
AACCAGCTTCGAAGTGTTGCCCACCTCCCTCCCCTCTCCGGTTTCCTCTC
CCTTAATCTCTTTTCCAACCGCCTTCGATCCTTCGTTCGCACCGGTTGCT
CTCCTTCCTTCATCTTCGTCATCCTCTTTTCTTCCAAACCTCACGCATTT
GGATTTATCCTGCAATGAGATAAGGACACTGGATGCTTCCTCCCCCTTTC
TTCCCTTCCACCTCGTCCTCAGCCTTCCCTTCAACCAGATAGAAAGTATG
GAGGAATGGGCCAGAGGGAGACATCACGGGTTGCTGCCAGCATTCCTCCT
TGCTCCCTCCCTCCCTCCCTTCCCCCCCCTCCTGTTGTTTAGGGACACGG
AGGGAGGTGCATCCAGTGGCACTAGCGACAGCAGCAGCAGTAGCAACGGC
AGCAACGGCAGCAGCGGGAGTGGACGAAGGTGGAGCGCGGCGAAAGGAAG
AGGGGGAAGGCGGCAGTGATGGGTAGATATAATTCGTTCACAAGGAGAGA
GAGGAACGAAAGGAGGGAGGGACGAGAAAGAAGGAAAAAAAGAGGGAAGT
AAGGGTTGGGGGAGGGTGTGATCCCT
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protein sequence of jgi.p|Nanoce1779_2|575893

>mRNA_16-protein ID=mRNA_16-protein|Name=jgi.p|Nanoce1779_2|575893|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MPTSFEVLPTSLPSPVSSPLISFPTAFDPSFAPVALLPSSSSSSFLPNLT
HLDLSCNEIRTLDASSPFLPFHLVLSLPFNQIESMEEWARGRHHGLLPAF
LLAPSLPPFPPLLLFRDTEGGASSGTSDSSSSSNGSNGSSGSGRRWSAAK
GRGGRRQ*
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mRNA from alignment at scaffold_3:51689..52929+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_16 ID=mRNA_16|Name=jgi.p|Nanoce1779_2|575893|organism=Nannochloropsis oceanica|type=mRNA|length=1241bp|location=Sequence derived from alignment at scaffold_3:51689..52929+ (Nannochloropsis oceanica)
CAGCAGCAGCAGCATCAGCAGCAGCATCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAAAGATGAGCAGGCCGTGGTTTGGGCGAGGCTGAGGTATGTT
GAGTGGATAGCTGTATAGGAATGAGACGGGGAGAGAAAGGAATACACAGC
GAACGAAGCAAAGTATGTTATATACATGGGCTTTTTCTCTGAGGGAAGGA
AAAACGCGCCGAAGTTTCACAAGCATACACCGTCCATTCCTCTTTCCTTC
TTGGAGCTCGCTCGTCTCTCAAACCGAAGAGTATCGCCTTACCCCCTCCT
CTTATTCTTCAACTCTGTCCGCAAAATAAAGGTCAATCAACCTCCATGCC
AACCAGCTTCGAAGTGTTGCCCACCTCCCTCCCCTCTCCGGTTTCCTCTC
CCTTAATCTCTTTTCCAACCGCCTTCGATCCTTCGTTCGCACCGGTTGCT
CTCCTTCCTTCATCTTCGTCATCCTCTTTTCTTCCAAACCTCACGCATTT
GGATTTATCCTGCAATGAGATAAGGACACTGGATGCTTCCTCCCCCTTTC
TTCCCTTCCACCTCGTCCTCAGCCTTCCCTTCAACCAGATAGAAAGTATG
GAGGAATGGGCCAGAGGGAGACATCACGGGTTGCTGCCAGGTGAGCAGGA
AGGGAGGGAGGGAGGAAGGGAAGGAAGACAGGGAGGGGAAATCATGGCCC
ATTTCCCTTCCCTTCAATTGCTGCACTCTAACCACATCAATATCAATAAC
GAATACATTTCGAGGGGAAAGGGGTGATGATTCAATACGCCCCCGACACA
CACTCGACCTTCCCTACCTTTTCTTCTCCGTCTTGTATTCTCCTCCTTCC
CAGCATTACAAACGCTTGACTTGGGAGACAATCGTTTCCCCCCCCCCCCC
CCCCCCTCCCTCCCATCACTCGTCTGCCCGGCCCTCACCGACCTTCTTCT
CCAAGCATTCCTCCTTGCTCCCTCCCTCCCTCCCTTCCCCCCCCTCCTGT
TGTTTAGGGACACGGAGGGAGGTGCATCCAGTGGCACTAGCGACAGCAGC
AGCAGTAGCAACGGCAGCAACGGCAGCAGCGGGAGTGGACGAAGGTGGAG
CGCGGCGAAAGGAAGAGGGGGAAGGCGGCAGTGATGGGTAGATATAATTC
GTTCACAAGGAGAGAGAGGAACGAAAGGAGGGAGGGACGAGAAAGAAGGA
AAAAAAGAGGGAAGTAAGGGTTGGGGGAGGGTGTGATCCCT
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Coding sequence (CDS) from alignment at scaffold_3:51689..52929+

>mRNA_16 ID=mRNA_16|Name=jgi.p|Nanoce1779_2|575893|organism=Nannochloropsis oceanica|type=CDS|length=948bp|location=Sequence derived from alignment at scaffold_3:51689..52929+ (Nannochloropsis oceanica)
ATGCCAACCAGCTTCGAAGTGTTGCCCACCTCCCTCCCCTCTCCGGTTTC
CTCTCCCTTAATCTCTTTTCCAACCGCCTTCGATCCTTCGTTCGCACCGG
TTGCTCTCCTTCCTTCATCTTCGTCATCCTCTTTTCTTCCAAACCTCACG
CATTTGGATTTATCCTGCAATGAGATAAGGACACTGGATGCTTCCTCCCC
CTTTCTTCCCTTCCACCTCGTCCTCAGCCTTCCCTTCAACCAGATAGAAA
GTATGGAGGAATGGGCCAGAGGGAGACATCACGGGTTGCTGCCAGCATTC
CTCCTTGCTCCCTCCCTCCCTCCCTTCCCCCCCCTCCTGTTGTTTAGGGA
CACGGAGGGAGGTGCATCCAGTGGCACTAGCGACAGCAGCAGCAGTAGCA
ACGGCAGCAACGGCAGCAGCGGGAGTGGACGAAGGTGGAGCGCGGCGAAA
GGAAGAGGGGGAAGGCGGCAGTGAATGCCAACCAGCTTCGAAGTGTTGCC
CACCTCCCTCCCCTCTCCGGTTTCCTCTCCCTTAATCTCTTTTCCAACCG
CCTTCGATCCTTCGTTCGCACCGGTTGCTCTCCTTCCTTCATCTTCGTCA
TCCTCTTTTCTTCCAAACCTCACGCATTTGGATTTATCCTGCAATGAGAT
AAGGACACTGGATGCTTCCTCCCCCTTTCTTCCCTTCCACCTCGTCCTCA
GCCTTCCCTTCAACCAGATAGAAAGTATGGAGGAATGGGCCAGAGGGAGA
CATCACGGGTTGCTGCCAGCATTCCTCCTTGCTCCCTCCCTCCCTCCCTT
CCCCCCCCTCCTGTTGTTTAGGGACACGGAGGGAGGTGCATCCAGTGGCA
CTAGCGACAGCAGCAGCAGTAGCAACGGCAGCAACGGCAGCAGCGGGAGT
GGACGAAGGTGGAGCGCGGCGAAAGGAAGAGGGGGAAGGCGGCAGTGA
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Synonyms
Publications