jgi.p|Nanoce1779_2|572835, mRNA_1598 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572835
Unique Name	mRNA_1598
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1865
Alignment location	scaffold_1:1042399..1044263 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572921
Track	FilteredModels2
ProteinId	572835

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1042399..1044263 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572835	gene_1598	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572835	mRNA_1598-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1598	CDS_1598	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1042399..1044263+
coding sequence from alignment at scaffold_1:1042399..1044263+

mRNA sequence

>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Nanoce1779_2|572835|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp
AGATGAAGGTCTCTGAGGCATCACGAAGTCAATGGGCCTTGCGACACGAG
GACATACGAGAGCACGACAACCTCAATATGACCACGTGCAAGACCTCGTG
TTACGCTTTAGTATACACAAGCCCCGGCACATTATTTGCAGACTGCTGAG
TGCAGGCGAACTGATGGATAAGTGGGCAGCGGATGCGGCATGATGAAGAT
GAAGAATGGGGGGGGGTTAACAACAAACTGTCTCCAAGCCAGCCGACACA
CTCCATGTTGTCCCATCCTCCCGGCTAATTAAAGCGAGTTAGATGGCATA
TATTGGCGCTTTTTTTAGCACCATGGTGTGGCAGGCAGGGTCTTTCACTC
TCTTCCGTGGGCCGTCTTTTTTCAAGCCTTTCCTTCTTCTTTCTGTCTTC
TCTTCACTCCCCTCTATGGTGCTATTGATTTCCCGCCATGCATGCATGAC
TTCTAGAATATTTACTAACGAATCTTTTTACGCGCTCTTATCTCTACGGC
GCATTCAACAGCCACCCTGAATGTATGTCCGTCCGGCTGGGCGCCCTTCG
GGTACTCCGGCTCAAAGTTCTGCAGCGCTTCAACCCAAGGTGAGAACTTT
CCACCGTTCCCCTCACATTTTACATATCAAATCTCCTTATATCTGCGCAC
ATCCAATCACAACAATGGAAGCATACCTTCGTCTTCTACCCTTGTACCCC
TCAAAAGCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTC
AAGGGGCGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCT
GAAGGGTGCCGATGCCAATAAGGCCACAACTTCGCATCTTAGTGACAAGG
AAAATCAAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAG
AAAGGAGGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCA
AGCTCGGGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATAC
TAGCCGACCTTTTGGCGACCAAACAATGTAATTTCGACAATGATGTGAGC
ACCTGCCCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCT
AGCTGTCGCCGATTCTCCAACACCTGAGCTCTCTCCTCAAGCGCTTGAGG
CATTTGACGCCGTCCAACATGGAGATATTTTCCGGCTTCGTGCCTTGCTC
TCCTCCACCTCCACCTCCACCTCCACCTCCTCCTCCTCCTCCTCAATAGC
AACGCCAAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGG
GGTCCCTTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTAGCAGGAGCA
GGCTCACCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGA
TGTCAACGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGG
GCTCGGGTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGAT
GCGCACTTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAG
TGGTCAGACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGT
TGAAGGTTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAG
AGGGGCAGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAATG
TGAGATGATTCTGGATGCGATGACAGAGGAGGAATATGTGTGGGTAGAGG
TGTTGCAGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGA
CGAGGACGAGGAGGGAGGAGAAAAACGGTGTAGCCCAACGCCTAAAGAAG
AAGTGTAAACGTACC

protein sequence of jgi.p|Nanoce1779_2|572835

>mRNA_1598-protein ID=mRNA_1598-protein|Name=jgi.p|Nanoce1779_2|572835|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MPQARDQLALLRTPGFSIILADLLATKQCNFDNDVSTCPPLPIAALSHTL
TGLAVADSPTPELSPQALEAFDAVQHGDIFRLRALLSSTSTSTSTSSSSS
SIATPNGAILVRARHPSHGGSLLHVAAGSTAALAGAGSPREEMCTLLLDA
GADVNALSDNGATPLHWAAGSGCADLVALLLRRGADAHLCTSTWGKQVFG
KDSGQTPSHWAAASGHADVLKVLGKWAPLSLGEKDERGRTPTALAAREGK
WECEMILDAMTEEEYVWVEVLQEGHAVRVMREEGGGRGRGGRRKTV*

mRNA from alignment at scaffold_1:1042399..1044263+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Nanoce1779_2|572835|organism=Nannochloropsis oceanica|type=mRNA|length=1865bp|location=Sequence derived from alignment at scaffold_1:1042399..1044263+ (Nannochloropsis oceanica)
AGATGAAGGTCTCTGAGGCATCACGAAGTCAATGGGCCTTGCGACACGAG
GACATACGAGAGCACGACAACCTCAATATGACCACGTGCAAGACCTCGTG
TTACGCTTTAGTATACACAAGCCCCGGCACATTATTTGCAGACTGCTGAG
TGCAGGCGAACTGATGGATAAGTGGGCAGCGGATGCGGCATGATGAAGAT
GAAGAATGGGGGGGGGTTAACAACAAACTGTCTCCAAGCCAGCCGACACA
CTCCATGTTGTCCCATCCTCCCGGCTAATTAAAGCGAGTTAGATGGCATA
TATTGGCGCTTTTTTTAGCACCATGGTGTGGCAGGCAGGGTCTTTCACTC
TCTTCCGTGGGCCGTCTTTTTTCAAGCCTTTCCTTCTTCTTTCTGTCTTC
TCTTCACTCCCCTCTATGGTGCTATTGATTTCCCGCCATGCATGCATGAC
TTCTAGAATATTTACTAACGAATCTTTTTACGCGCTCTTATCTCTACGGC
GCATTCAACAGCCACCCTGAATGTATGTCCGTCCGGCTGGGCGCCCTTCG
GGTACTCCGGCTCAAAGTTCTGCAGCGCTTCAACCCAAGGTGAGAACTTT
CCACCGTTCCCCTCACATTTTACATATCAAATCTCCTTATATCTGCGCAC
ATCCAATCACAACAATGGAAGCATACCTTCGTCTTCTACCCTTGTACCCC
TCAAAAGCCGCGTGTTGGCCTCGTACGAGCAGTTGGAAGGGACGCAGCTC
AAGGGGCGTTCTGTTTATTTGGTCCGAAAATCTTTAGTTGAAGACATTCT
GAAGGGTGCCGATGCCAATAAGGCCACAACTTCGCATCTTAGTGACAAGG
AAAATCAAATTGTGGTTTCCATAGGAGGCAATAATGATAAAGACCATCAG
AAAGGAGGACTGCTTTCTGCAACGTCTTCCTCCCTCCCCTCCATGCCCCA
AGCTCGGGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTCCATTATAC
TAGCCGACCTTTTGGCGACCAAACAATGTAATTTCGACAATGATGTGAGC
ACCTGCCCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTGACGGGCCT
AGCTGTCGCCGATTCTCCAACACCTGAGCTCTCTCCTCAAGCGCTTGAGG
CATTTGACGCCGTCCAACATGGAGATATTTTCCGGCTTCGTGCCTTGCTC
TCCTCCACCTCCACCTCCACCTCCACCTCCTCCTCCTCCTCCTCAATAGC
AACGCCAAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAGCCATGGGG
GGTCCCTTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTAGCAGGAGCA
GGCTCACCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCCGGTGCGGA
TGTCAACGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTGGGCTGCGG
GCTCGGGTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAGGAGCAGAT
GCGCACTTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGGAAGGACAG
TGGTCAGACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGCTGATGTGT
TGAAGGTTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAAAGGACGAG
AGGGGCAGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAGTGGGAATG
TGAGATGATTCTGGATGCGATGACAGAGGAGGAATATGTGTGGGTAGAGG
TGTTGCAGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAGGAGGAGGA
CGAGGACGAGGAGGGAGGAGAAAAACGGTGTAGCCCAACGCCTAAAGAAG
AAGTGTAAACGTACC

Coding sequence (CDS) from alignment at scaffold_1:1042399..1044263+

>mRNA_1598 ID=mRNA_1598|Name=jgi.p|Nanoce1779_2|572835|organism=Nannochloropsis oceanica|type=CDS|length=891bp|location=Sequence derived from alignment at scaffold_1:1042399..1044263+ (Nannochloropsis oceanica)
ATGCCCCAAGCTCGGGACCAACTGGCTCTCCTTCGCACTCCAGGCTTCTC
CATTATACTAGCCGACCTTTTGGCGACCAAACAATGTAATTTCGACAATG
ATGTGAGCACCTGCCCGCCTCTCCCGATTGCTGCCTTGTCTCACACCTTG
ACGGGCCTAGCTGTCGCCGATTCTCCAACACCTGAGCTCTCTCCTCAAGC
GCTTGAGGCATTTGACGCCGTCCAACATGGAGATATTTTCCGGCTTCGTG
CCTTGCTCTCCTCCACCTCCACCTCCACCTCCACCTCCTCCTCCTCCTCC
TCAATAGCAACGCCAAATGGTGCCATTTTAGTGCGTGCCCGCCACCCGAG
CCATGGGGGGTCCCTTCTCCATGTCGCTGCCGGTTCGACCGCTGCATTAG
CAGGAGCAGGCTCACCAAGAGAAGAAATGTGTACCCTCCTCCTTGATGCC
GGTGCGGATGTCAACGCCTTGAGTGATAACGGCGCCACCCCCCTCCATTG
GGCTGCGGGCTCGGGTTGCGCTGACCTGGTCGCCCTCCTCCTCCGCCGAG
GAGCAGATGCGCACTTGTGTACCTCTACATGGGGAAAACAAGTTTTTGGG
AAGGACAGTGGTCAGACGCCGAGTCATTGGGCGGCGGCAAGTGGACATGC
TGATGTGTTGAAGGTTCTAGGTAAGTGGGCCCCACTGTCGCTGGGGGAAA
AGGACGAGAGGGGCAGGACACCGACAGCCTTGGCGGCAAGGGAGGGGAAG
TGGGAATGTGAGATGATTCTGGATGCGATGACAGAGGAGGAATATGTGTG
GGTAGAGGTGTTGCAGGAAGGGCACGCTGTGCGCGTGATGAGGGAGGAAG
GAGGAGGACGAGGACGAGGAGGGAGGAGAAAAACGGTGTAG

Synonyms

Publications