jgi.p|Nanoce1779_2|622226, mRNA_1597 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|622226
Unique Name	mRNA_1597
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1272
Alignment location	scaffold_1:1040436..1042144 -

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Properties


Property Name	Value
TranscriptId	622312
Track	FilteredModels2
ProteinId	622226

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1040436..1042144 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622226	gene_1597	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|622226	mRNA_1597-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1597	CDS_1597	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1040436..1042144-
coding sequence from alignment at scaffold_1:1040436..1042144-

mRNA sequence

>mRNA_1597 ID=mRNA_1597|Name=jgi.p|Nanoce1779_2|622226|organism=Nannochloropsis oceanica|type=mRNA|length=1272bp
ATGTCGTCACTATGCACTGCCATCGCGACGGCAGGCGGCGACGGAGGTTT
AACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCG
CCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATATGGAGGCC
CGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCC
ACCTGCCGAGGTAGTCGAAGCCACCATCCAAGCCGTCCGCGAAGGCCACA
CCCGCTACACAGCTGTCACAGGAGAAGCCGCCCTGAGGGCAGCTATCTGT
AAAGATTTAGAAACTCGAAAGGGCATCAAATATACCCCTGAAGAGATTAT
TGTTGGGAATGGAGCCAAGCAAGAGGTGTATCAAGCCCTGCTTGCTTTGT
GTCGACCGGGGGATGAAGTCATTATACCGGCCCCATACTGGCCTAGCTAC
CCAGAGATTGTCAAGTTAACGGGAGCGACACCGGTCATCTTGGGGACCAA
GGCGGCGGATGGATTTTTGGTAGACCCTGAGGCGCTGTCAGCAGCGATCA
CGCCCAAGACTCGAATGTTCATCTTCTGTAATCCCAGCAATCCAACAGGG
GCAGTGCACCCCCCCTCCGTCGTGGACGCAGTGGGAGCCATCCTTAAACG
TCCTCATGCCAAGCATGTTTGGGCTTTGTCTGACGAGATATACGAGCGGA
TCGTCTACGACACACCACACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGT
GATCGTGTATTGTTAATAAATGGATTTTCGAAAGCCTTTGCCATGACGGG
CTATCGGCTTGGATACCTTGCTGGTCCTCTGGCAGTCATCAAGGGATGTA
CCACCCTCCAGTCGCAAATCACATCGTGCGCCAGCAGCATTGCCCAACGA
GCGGGCACCGCGGCGTTAGGTCTTCCGGAAGCAGCGATGGTACCCTCGGT
GGCGATGATGCGTAAGAAGCGGGATCAAGTCATGGCGGCCTTGGCCAAAA
TCCCGCGGGTGACGTGCTCGATTCCGCAAGGGGCCTTTTATGTCCTGCCT
GACATATCGGCATACTACCACAAGACTACACCCGCGGGAAAAATCATTCG
GGATGGGCACGAGCTGTGTATGTATTTATTGAAAGAGTACAAGGTGGCAT
TGGTCCCTGGGGATTCATTCGGGGACTCATCTACCATCCGCATTTCTTAT
GCGACGTCGGAGAAAGAGCTGGACATAGCTCTGACCCGATTGGGCGACTG
CTTGGCCTCGCTTTCTCAGTAG

protein sequence of jgi.p|Nanoce1779_2|622226

>mRNA_1597-protein ID=mRNA_1597-protein|Name=jgi.p|Nanoce1779_2|622226|organism=Nannochloropsis oceanica|type=polypeptide|length=424bp
MSSLCTAIATAGGDGGLTSHEKESLLNPLLSSVAVSKTIEIHAMTKNMEA
RGETVVSLCVGEPDFPPPAEVVEATIQAVREGHTRYTAVTGEAALRAAIC
KDLETRKGIKYTPEEIIVGNGAKQEVYQALLALCRPGDEVIIPAPYWPSY
PEIVKLTGATPVILGTKAADGFLVDPEALSAAITPKTRMFIFCNPSNPTG
AVHPPSVVDAVGAILKRPHAKHVWALSDEIYERIVYDTPHKSLAAVSGLR
DRVLLINGFSKAFAMTGYRLGYLAGPLAVIKGCTTLQSQITSCASSIAQR
AGTAALGLPEAAMVPSVAMMRKKRDQVMAALAKIPRVTCSIPQGAFYVLP
DISAYYHKTTPAGKIIRDGHELCMYLLKEYKVALVPGDSFGDSSTIRISY
ATSEKELDIALTRLGDCLASLSQ*

mRNA from alignment at scaffold_1:1040436..1042144-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1597 ID=mRNA_1597|Name=jgi.p|Nanoce1779_2|622226|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at scaffold_1:1040436..1042144- (Nannochloropsis oceanica)
ATGTCGTCACTATGCACTGCCATCGCGACGGCAGGCGGCGACGGAGGTTT
AACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCG
CCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATATGGAGGCC
CGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCC
ACCTGCCGGTAGGTTTGAAGGACCTCGATCCTGAGAGCTAGATGGAAGCT
GCAGTCAGAGCAGACACCATATGTTTCCTATACACCCTCCTGGCTAGAAA
GTTTGTCCATGTTTTCAGGAGCGTGGTCACGCAAACGTTTTTCAAGTTAT
TAACATGTATTTATCTTTACTGTGTACTCACAGACCTGTCGTCTAAATTC
CTGGCTCACCCACACCATACAGAGGTAGTCGAAGCCACCATCCAAGCCGT
CCGCGAAGGCCACACCCGCTACACAGCTGTCACAGGAGAAGCCGCCCTGA
GGGCAGCTATCTGTAAAGATTTAGAAACTCGAAAGGGCATCAAATATACC
CCTGAAGAGATTATTGTTGGGAATGGAGCCAAGCAAGAGGTGTATCAAGC
CCTGCTTGCTTTGTGTCGACCGGGGGATGAAGTCATTATACCGGCCCCAT
ACTGGCCTAGCTACCCAGAGATTGTCAAGTTAACGGGAGCGACACCGGTC
ATCTTGGGGACCAAGGCGGCGGATGGATTTTTGGTAGACCCTGAGGCGCT
GTCAGCAGCGATCACGCCCAAGACTCGAATGGTAAGTGGGAGAGAGAGGA
GAGGGTGAGGGGAGGAGGAAAAGGGTCGGCACGCTCGCTGTGGAATGCGA
CTGGTTTTCGCACTTAATGGTGAGATTCTAAATTGCCGGGTCATCCTCAA
AACGATTGGCGACAGGGCTATCTTCTTCTTTCCCATGCACCCATGCACCC
TCTGCCGCTGTCTTAACACATACTCTCCTCCTTTCCTCCCTGCCCACCAT
ACAGTTCATCTTCTGTAATCCCAGCAATCCAACAGGGGCAGTGCACCCCC
CCTCCGTCGTGGACGCAGTGGGAGCCATCCTTAAACGTCCTCATGCCAAG
CATGTTTGGGCTTTGTCTGACGAGATATACGAGCGGATCGTCTACGACAC
ACCACACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGTGATCGTGTATTGT
TAATAAATGGATTTTCGAAAGCCTTTGCCATGACGGGCTATCGGCTTGGA
TACCTTGCTGGTCCTCTGGCAGTCATCAAGGGATGTACCACCCTCCAGTC
GCAAATCACATCGTGCGCCAGCAGCATTGCCCAACGAGCGGGCACCGCGG
CGTTAGGTCTTCCGGAAGCAGCGATGGTACCCTCGGTGGCGATGATGCGT
AAGAAGCGGGATCAAGTCATGGCGGCCTTGGCCAAAATCCCGCGGGTGAC
GTGCTCGATTCCGCAAGGGGCCTTTTATGTCCTGCCTGACATATCGGCAT
ACTACCACAAGACTACACCCGCGGGAAAAATCATTCGGGATGGGCACGAG
CTGTGTATGTATTTATTGAAAGAGTACAAGGTGGCATTGGTCCCTGGGGA
TTCATTCGGGGACTCATCTACCATCCGCATTTCTTATGCGACGTCGGAGA
AAGAGCTGGACATAGCTCTGACCCGATTGGGCGACTGCTTGGCCTCGCTT
TCTCAGTAG

Coding sequence (CDS) from alignment at scaffold_1:1040436..1042144-

>mRNA_1597 ID=mRNA_1597|Name=jgi.p|Nanoce1779_2|622226|organism=Nannochloropsis oceanica|type=CDS|length=3816bp|location=Sequence derived from alignment at scaffold_1:1040436..1042144- (Nannochloropsis oceanica)
TTCATCTTCTGTAATCCCAGCAATCCAACAGGGGCAGTGCACCCCCCCTC
CGTCGTGGACGCAGTGGGAGCCATCCTTAAACGTCCTCATGCCAAGCATG
TTTGGGCTTTGTCTGACGAGATATACGAGCGGATCGTCTACGACACACCA
CACAAGAGCCTCGCAGCCGTCTCTGGCCTGCGTGATCGTGTATTGTTAAT
AAATGGATTTTCGAAAGCCTTTGCCATGACGGGCTATCGGCTTGGATACC
TTGCTGGTCCTCTGGCAGTCATCAAGGGATGTACCACCCTCCAGTCGCAA
ATCACATCGTGCGCCAGCAGCATTGCCCAACGAGCGGGCACCGCGGCGTT
AGGTCTTCCGGAAGCAGCGATGGTACCCTCGGTGGCGATGATGCGTAAGA
AGCGGGATCAAGTCATGGCGGCCTTGGCCAAAATCCCGCGGGTGACGTGC
TCGATTCCGCAAGGGGCCTTTTATGTCCTGCCTGACATATCGGCATACTA
CCACAAGACTACACCCGCGGGAAAAATCATTCGGGATGGGCACGAGCTGT
GTATGTATTTATTGAAAGAGTACAAGGTGGCATTGGTCCCTGGGGATTCA
TTCGGGGACTCATCTACCATCCGCATTTCTTATGCGACGTCGGAGAAAGA
GCTGGACATAGCTCTGACCCGATTGGGCGACTGCTTGGCCTCGCTTTCTC
AGTAGAGGTAGTCGAAGCCACCATCCAAGCCGTCCGCGAAGGCCACACCC
GCTACACAGCTGTCACAGGAGAAGCCGCCCTGAGGGCAGCTATCTGTAAA
GATTTAGAAACTCGAAAGGGCATCAAATATACCCCTGAAGAGATTATTGT
TGGGAATGGAGCCAAGCAAGAGGTGTATCAAGCCCTGCTTGCTTTGTGTC
GACCGGGGGATGAAGTCATTATACCGGCCCCATACTGGCCTAGCTACCCA
GAGATTGTCAAGTTAACGGGAGCGACACCGGTCATCTTGGGGACCAAGGC
GGCGGATGGATTTTTGGTAGACCCTGAGGCGCTGTCAGCAGCGATCACGC
CCAAGACTCGAATGATGTCGTCACTATGCACTGCCATCGCGACGGCAGGC
GGCGACGGAGGTTTAACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTT
GCTGAGCTCAGTCGCCGTGAGCAAGACCATTGAGATTCACGCCATGACCA
AGAATATGGAGGCCCGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAA
CCAGATTTCCCCCCACCTGCCGTTCATCTTCTGTAATCCCAGCAATCCAA
CAGGGGCAGTGCACCCCCCCTCCGTCGTGGACGCAGTGGGAGCCATCCTT
AAACGTCCTCATGCCAAGCATGTTTGGGCTTTGTCTGACGAGATATACGA
GCGGATCGTCTACGACACACCACACAAGAGCCTCGCAGCCGTCTCTGGCC
TGCGTGATCGTGTATTGTTAATAAATGGATTTTCGAAAGCCTTTGCCATG
ACGGGCTATCGGCTTGGATACCTTGCTGGTCCTCTGGCAGTCATCAAGGG
ATGTACCACCCTCCAGTCGCAAATCACATCGTGCGCCAGCAGCATTGCCC
AACGAGCGGGCACCGCGGCGTTAGGTCTTCCGGAAGCAGCGATGGTACCC
TCGGTGGCGATGATGCGTAAGAAGCGGGATCAAGTCATGGCGGCCTTGGC
CAAAATCCCGCGGGTGACGTGCTCGATTCCGCAAGGGGCCTTTTATGTCC
TGCCTGACATATCGGCATACTACCACAAGACTACACCCGCGGGAAAAATC
ATTCGGGATGGGCACGAGCTGTGTATGTATTTATTGAAAGAGTACAAGGT
GGCATTGGTCCCTGGGGATTCATTCGGGGACTCATCTACCATCCGCATTT
CTTATGCGACGTCGGAGAAAGAGCTGGACATAGCTCTGACCCGATTGGGC
GACTGCTTGGCCTCGCTTTCTCAGTAGAGGTAGTCGAAGCCACCATCCAA
GCCGTCCGCGAAGGCCACACCCGCTACACAGCTGTCACAGGAGAAGCCGC
CCTGAGGGCAGCTATCTGTAAAGATTTAGAAACTCGAAAGGGCATCAAAT
ATACCCCTGAAGAGATTATTGTTGGGAATGGAGCCAAGCAAGAGGTGTAT
CAAGCCCTGCTTGCTTTGTGTCGACCGGGGGATGAAGTCATTATACCGGC
CCCATACTGGCCTAGCTACCCAGAGATTGTCAAGTTAACGGGAGCGACAC
CGGTCATCTTGGGGACCAAGGCGGCGGATGGATTTTTGGTAGACCCTGAG
GCGCTGTCAGCAGCGATCACGCCCAAGACTCGAATGATGTCGTCACTATG
CACTGCCATCGCGACGGCAGGCGGCGACGGAGGTTTAACCAGTCATGAAA
AAGAGAGCCTACTCAATCCCTTGCTGAGCTCAGTCGCCGTGAGCAAGACC
ATTGAGATTCACGCCATGACCAAGAATATGGAGGCCCGGGGTGAGACTGT
CGTGTCATTGTGCGTTGGAGAACCAGATTTCCCCCCACCTGCCGTTCATC
TTCTGTAATCCCAGCAATCCAACAGGGGCAGTGCACCCCCCCTCCGTCGT
GGACGCAGTGGGAGCCATCCTTAAACGTCCTCATGCCAAGCATGTTTGGG
CTTTGTCTGACGAGATATACGAGCGGATCGTCTACGACACACCACACAAG
AGCCTCGCAGCCGTCTCTGGCCTGCGTGATCGTGTATTGTTAATAAATGG
ATTTTCGAAAGCCTTTGCCATGACGGGCTATCGGCTTGGATACCTTGCTG
GTCCTCTGGCAGTCATCAAGGGATGTACCACCCTCCAGTCGCAAATCACA
TCGTGCGCCAGCAGCATTGCCCAACGAGCGGGCACCGCGGCGTTAGGTCT
TCCGGAAGCAGCGATGGTACCCTCGGTGGCGATGATGCGTAAGAAGCGGG
ATCAAGTCATGGCGGCCTTGGCCAAAATCCCGCGGGTGACGTGCTCGATT
CCGCAAGGGGCCTTTTATGTCCTGCCTGACATATCGGCATACTACCACAA
GACTACACCCGCGGGAAAAATCATTCGGGATGGGCACGAGCTGTGTATGT
ATTTATTGAAAGAGTACAAGGTGGCATTGGTCCCTGGGGATTCATTCGGG
GACTCATCTACCATCCGCATTTCTTATGCGACGTCGGAGAAAGAGCTGGA
CATAGCTCTGACCCGATTGGGCGACTGCTTGGCCTCGCTTTCTCAGTAGA
GGTAGTCGAAGCCACCATCCAAGCCGTCCGCGAAGGCCACACCCGCTACA
CAGCTGTCACAGGAGAAGCCGCCCTGAGGGCAGCTATCTGTAAAGATTTA
GAAACTCGAAAGGGCATCAAATATACCCCTGAAGAGATTATTGTTGGGAA
TGGAGCCAAGCAAGAGGTGTATCAAGCCCTGCTTGCTTTGTGTCGACCGG
GGGATGAAGTCATTATACCGGCCCCATACTGGCCTAGCTACCCAGAGATT
GTCAAGTTAACGGGAGCGACACCGGTCATCTTGGGGACCAAGGCGGCGGA
TGGATTTTTGGTAGACCCTGAGGCGCTGTCAGCAGCGATCACGCCCAAGA
CTCGAATGATGTCGTCACTATGCACTGCCATCGCGACGGCAGGCGGCGAC
GGAGGTTTAACCAGTCATGAAAAAGAGAGCCTACTCAATCCCTTGCTGAG
CTCAGTCGCCGTGAGCAAGACCATTGAGATTCACGCCATGACCAAGAATA
TGGAGGCCCGGGGTGAGACTGTCGTGTCATTGTGCGTTGGAGAACCAGAT
TTCCCCCCACCTGCCG

Synonyms

Publications