jgi.p|Nanoce1779_2|572827, mRNA_1594 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572827
Unique Name	mRNA_1594
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1400
Alignment location	scaffold_1:1032586..1034310 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572913
Track	FilteredModels2
ProteinId	572827

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1032586..1034310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572827	gene_1594	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572827	mRNA_1594-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1594	CDS_1594	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1032586..1034310+
coding sequence from alignment at scaffold_1:1032586..1034310+

mRNA sequence

>mRNA_1594 ID=mRNA_1594|Name=jgi.p|Nanoce1779_2|572827|organism=Nannochloropsis oceanica|type=mRNA|length=1400bp
AATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAAGT
CGTCACCCTTCATTCTATTTCTTGTAAATGGGTGTCTCCGGCTCCAAGGG
CTGCTGCATGTGCTGTGTCCCCGACAAGGCCCTCATGGCCTGTGGACCTG
CCGTGCCCATTGCAAAGGAGCTGCACAGTGAATCTGCGCAGGTCGCGCCC
TCAGGCCATGGGGTCCATCATAAGGGGTTGGGCGAGGCAATCCAGGCCCG
GACACGTTGTATATCTGCGTGTGCTGTCCGCTGCATCCACGACCATTTGC
CAGGCCATCGACACGACCATATGAAGGCGCCAGCGGTGATGAGGGAGGAA
GAGGCGAAAAAGTGGCTGTTAGTCAAGCGCAAGGATTTTGCCCGGGTGCG
TATGGTTTGTTTTCCGTATGCAGGCGGGAACTCTAATTTCTACAAGACGT
GGGATTTCAAGGAGACGGAGATGGTATTGGTGGAGCTGCCGGGGCGTAAT
GCCCGGTACAATGAAAAGGCCATGACAGACGTGTACTCAATCGCGAAGAA
GATTGCTTCGGCATTGGATGCGGTCGGGTATTTGAAGTCGAAGATTCCGT
TGGTGTTTTTCGGTCACAGCTTTGGTGCGATCGTGTCGACGTTGGTGGCG
CAAGTGTTGCGGAATCAGTATAATTATACACCCAAGCATTTGATTGTCTC
GGGTTGTGTACCCTTGCATATGAGGGCGGGGCGCCCGAAGTTCTCCGTGC
CAAACGATAATGATCTAGTGACGTCTCTGTTAGACATGGGGGGAATCACG
AAGGAGATGGCCAAGAACCGAGATGTGGTCAGTCAGTTCCTCCCCGCGTT
GAAGGGAGATTACCTAGCGGTGGATAAGTATGTGTACCACGAAGCGGAGC
CCTTGGCCTGCCCGATTTTAGCCTTGGGCAGCGACCAAGACATGCGAGTC
CCCCAGCAAGAGACGGCCGAATGGGCTCGCTTCACGGCGGGGGAGTTTGA
GTCACGCATTTTCCCGGGCGGACATTTTTTCCTCAAGCCGTTGGAGAAGG
ATGTAATTGCGTATATTTCTTCAGTTATTTTCAAGGACATGACGGGCCCG
GGGGCCATGGCATTGCCGGGATTCATCCTCTTTGATCCCAATAAGGTTGA
GTAAGAACGGGATGAGAAGTCGTAAGCGACAAGAAAAGTTGAGAATTACT
GATATGGAACAACAATCAAATGTGCCTGTACATAAGGATTATGTACCCCG
AAGTTGAGAATAAAATATACGTGGCGGGAATACCTTTTGGATTCAGTGTT
CACGTGTGTGTTTCTGGGAGTGGTTGTATTGAAGGTAGTGCGGTGTATGG
GAGACTTGAAAGGAAATGAAAGGAAATACAGTAATTTCTTGTCTGTTGTG

protein sequence of jgi.p|Nanoce1779_2|572827

>mRNA_1594-protein ID=mRNA_1594-protein|Name=jgi.p|Nanoce1779_2|572827|organism=Nannochloropsis oceanica|type=polypeptide|length=359bp
MGVSGSKGCCMCCVPDKALMACGPAVPIAKELHSESAQVAPSGHGVHHKG
LGEAIQARTRCISACAVRCIHDHLPGHRHDHMKAPAVMREEEAKKWLLVK
RKDFARVRMVCFPYAGGNSNFYKTWDFKETEMVLVELPGRNARYNEKAMT
DVYSIAKKIASALDAVGYLKSKIPLVFFGHSFGAIVSTLVAQVLRNQYNY
TPKHLIVSGCVPLHMRAGRPKFSVPNDNDLVTSLLDMGGITKEMAKNRDV
VSQFLPALKGDYLAVDKYVYHEAEPLACPILALGSDQDMRVPQQETAEWA
RFTAGEFESRIFPGGHFFLKPLEKDVIAYISSVIFKDMTGPGAMALPGFI
LFDPNKVE*

mRNA from alignment at scaffold_1:1032586..1034310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1594 ID=mRNA_1594|Name=jgi.p|Nanoce1779_2|572827|organism=Nannochloropsis oceanica|type=mRNA|length=1725bp|location=Sequence derived from alignment at scaffold_1:1032586..1034310+ (Nannochloropsis oceanica)
AATAGGGAGGCCCTAGGGGAAGAGTCCTGTGCAGCCATCGTCGTTTAAGT
CGTCACCCTTCATTCTATTTCTTGTAAATGGGTAAGTGAAAGGGCGCGCT
GGGTCGCGGTAGGAGAGGAGAGACGAGTGAGAAGATAAGTGAAGATCGGT
CTAGAGACAATGCGAACTCAATATAGAACGACGAAGCTAGTCGTATGCCC
AAGTCCTGTCTTAGGGGATGACCATGTGTGCATGTCTTCCTTTTCCAGTA
CCACTTGCCTGGCCGACCTCCCATTCACGGAGGGCATCGCTACATTCCCA
CACATTTTTCCGCACATCCCATCATCTATCCCTACAGTCTTTAAAAAAAA
ACATAACCTTTCTTCCAACCATTACTCCAATACCTTGCCCTATCCAACCC
ACATAGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCGAC
AAGGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTGCA
CAGTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAAGG
GGTTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTGCT
GTCCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATGAA
GGCGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGTCA
AGCGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAGGC
GGGAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATGGT
ATTGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCATGA
CAGACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGGTC
GGGTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTTGG
TGCGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAATT
ATACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGAGG
GCGGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATCTAGTGACGTC
TCTGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGATG
TGGTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGGAT
AAGTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCCTT
GGGCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATGGG
CTCGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGACAT
TTTTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCAGT
TATTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATTCA
TCCTCTTTGATCCCAATAAGGTTGAGTAAGAACGGGATGAGAAGTCGTAA
GCGACAAGAAAAGTTGAGAATTACTGATATGGAACAACAATCAAATGTGC
CTGTACATAAGGATTATGTACCCCGAAGTTGAGAATAAAATATACGTGGC
GGGAATACCTTTTGGATTCAGTGTTCACGTGTGTGTTTCTGGGAGTGGTT
GTATTGAAGGTAGTGCGGTGTATGGGAGACTTGAAAGGAAATGAAAGGAA
ATACAGTAATTTCTTGTCTGTTGTG

Coding sequence (CDS) from alignment at scaffold_1:1032586..1034310+

>mRNA_1594 ID=mRNA_1594|Name=jgi.p|Nanoce1779_2|572827|organism=Nannochloropsis oceanica|type=CDS|length=2154bp|location=Sequence derived from alignment at scaffold_1:1032586..1034310+ (Nannochloropsis oceanica)
ATGGGTGTCTCCGGCTCCAAGGGCTGCTGCATGTGCTGTGTCCCCGACAA
GGCCCTCATGGCCTGTGGACCTGCCGTGCCCATTGCAAAGGAGCTGCACA
GTGAATCTGCGCAGGTCGCGCCCTCAGGCCATGGGGTCCATCATAAGGGG
TTGGGCGAGGCAATCCAGGCCCGGACACGTTGTATATCTGCGTGTGCTGT
CCGCTGCATCCACGACCATTTGCCAGGCCATCGACACGACCATATGAAGG
CGCCAGCGGTGATGAGGGAGGAAGAGGCGAAAAAGTGGCTGTTAGTCAAG
CGCAAGGATTTTGCCCGGGTGCGTATGGTTTGTTTTCCGTATGCAGGCGG
GAACTCTAATTTCTACAAGACGTGGGATTTCAAGGAGACGGAGATGGTAT
TGGTGGAGCTGCCGGGGCGTAATGCCCGGTACAATGAAAAGGCCATGACA
GACGTGTACTCAATCGCGAAGAAGATTGCTTCGGCATTGGATGCGGTCGG
GTATTTGAAGTCGAAGATTCCGTTGGTGTTTTTCGGTCACAGCTTTGGTG
CGATCGTGTCGACGTTGGTGGCGCAAGTGTTGCGGAATCAGTATAATTAT
ACACCCAAGCATTTGATTGTCTCGGGTTGTGTACCCTTGCATATGAGGGC
GGGGCGCCCGAAGTTCTCCGTGCCAAACGATAATGATCTAGTGACGTCTC
TGTTAGACATGGGGGGAATCACGAAGGAGATGGCCAAGAACCGAGATGTG
GTCAGTCAGTTCCTCCCCGCGTTGAAGGGAGATTACCTAGCGGTGGATAA
GTATGTGTACCACGAAGCGGAGCCCTTGGCCTGCCCGATTTTAGCCTTGG
GCAGCGACCAAGACATGCGAGTCCCCCAGCAAGAGACGGCCGAATGGGCT
CGCTTCACGGCGGGGGAGTTTGAGTCACGCATTTTCCCGGGCGGACATTT
TTTCCTCAAGCCGTTGGAGAAGGATGTAATTGCGTATATTTCTTCAGTTA
TTTTCAAGGACATGACGGGCCCGGGGGCCATGGCATTGCCGGGATTCATC
CTCTTTGATCCCAATAAGGTTGAGTAAATGGGTGTCTCCGGCTCCAAGGG
CTGCTGCATGTGCTGTGTCCCCGACAAGGCCCTCATGGCCTGTGGACCTG
CCGTGCCCATTGCAAAGGAGCTGCACAGTGAATCTGCGCAGGTCGCGCCC
TCAGGCCATGGGGTCCATCATAAGGGGTTGGGCGAGGCAATCCAGGCCCG
GACACGTTGTATATCTGCGTGTGCTGTCCGCTGCATCCACGACCATTTGC
CAGGCCATCGACACGACCATATGAAGGCGCCAGCGGTGATGAGGGAGGAA
GAGGCGAAAAAGTGGCTGTTAGTCAAGCGCAAGGATTTTGCCCGGGTGCG
TATGGTTTGTTTTCCGTATGCAGGCGGGAACTCTAATTTCTACAAGACGT
GGGATTTCAAGGAGACGGAGATGGTATTGGTGGAGCTGCCGGGGCGTAAT
GCCCGGTACAATGAAAAGGCCATGACAGACGTGTACTCAATCGCGAAGAA
GATTGCTTCGGCATTGGATGCGGTCGGGTATTTGAAGTCGAAGATTCCGT
TGGTGTTTTTCGGTCACAGCTTTGGTGCGATCGTGTCGACGTTGGTGGCG
CAAGTGTTGCGGAATCAGTATAATTATACACCCAAGCATTTGATTGTCTC
GGGTTGTGTACCCTTGCATATGAGGGCGGGGCGCCCGAAGTTCTCCGTGC
CAAACGATAATGATCTAGTGACGTCTCTGTTAGACATGGGGGGAATCACG
AAGGAGATGGCCAAGAACCGAGATGTGGTCAGTCAGTTCCTCCCCGCGTT
GAAGGGAGATTACCTAGCGGTGGATAAGTATGTGTACCACGAAGCGGAGC
CCTTGGCCTGCCCGATTTTAGCCTTGGGCAGCGACCAAGACATGCGAGTC
CCCCAGCAAGAGACGGCCGAATGGGCTCGCTTCACGGCGGGGGAGTTTGA
GTCACGCATTTTCCCGGGCGGACATTTTTTCCTCAAGCCGTTGGAGAAGG
ATGTAATTGCGTATATTTCTTCAGTTATTTTCAAGGACATGACGGGCCCG
GGGGCCATGGCATTGCCGGGATTCATCCTCTTTGATCCCAATAAGGTTGA
GTAA

Synonyms

Publications