jgi.p|Nanoce1779_2|535816, mRNA_1593 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|535816
Unique Name	mRNA_1593
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1970
Alignment location	scaffold_1:1030419..1032388 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	535902
Track	FilteredModels2
ProteinId	535816

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1030419..1032388 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535816	gene_1593	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|535816	mRNA_1593-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1593	CDS_1593	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1030419..1032388+
coding sequence from alignment at scaffold_1:1030419..1032388+

mRNA sequence

>mRNA_1593 ID=mRNA_1593|Name=jgi.p|Nanoce1779_2|535816|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp
CAATACTCCAAACTCCGCGAATGTACCCTACTACCACATGGTCGGGCATC
CTTCATTGTAGTTCTTGCCCTGCGGTCGGTGGGGCGCGACCTGAAATTTC
ACGTCTCACGCAACACCATTATTCCCGTCACAGGCCCCTCCTTCTTTACG
TCCTCCTTATTGCGCTCGCGGCCATCACCGACCACTTCCATCGTCCATCT
ACAGCATCATCATGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGC
ACGCAGCAGCCTGCCGCGGCATCAGACCTAAAGCTCCCACACACGCAAGC
TGATGGCATCTCGTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGG
TAGCGGCAGGATCATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAA
CAAGCCTCTCAAGGTTTGGGCATGCCATCACAGCCTAATATCATGGCTAC
ACCCATCGGTGAGATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGT
CAGCCGAGGGCAACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATG
TGGACTCCTAACCCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGA
ACACAGCGCACCGATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTG
TCATCACAGGTTCCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCA
CCCTCTCCCGCGCATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGA
CTGCCGCTACCCTTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATG
TCTATAATCTGGCCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCT
ATTCAGTCGCAGATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCC
TGATTGCTCGGGATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCC
ATTACATTGATCATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAA
TGCCACAGGGTGGACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCA
CGCCGTCAATGCCATTTCGTTCCACAATAGATACGGTACATTTGCCACAG
CGGGCGCAGATGGTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGG
CTGAAGCCACCGACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAA
TCAACGAGGGGACTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGG
GTTCAGAGCATTACAATAAGCAGGGGCCCAATGATATTTATATTCACATG
GTGAAGGAAGATGAGATTAAACCCAAGAAGAAGTAGAGTCGGTGGGGTTG
GAGGGTGGTGGTTAAAAAGCAACAGCGCTTGTATAAATACTGACTCTGGC
TGGTAATGGTGCTGGTTTGTATTCTCCGTCTTGCCTATTTAATGTCATGA
GCTGACTATCGAGGAAGCCCTTCTGACGGGACGATGCCCTCTATTAAATC
TAACCGAGCGGCTAAGTCGCCTCATTTTGTAATTTCGGACACTTGGCTGT
CTTTTGGCGGCTCGTCCCATCAGGCCCTACCATTCTCCGAGTCTTCGTCG
GCGAGAGCGGGACCAAAGAGCGGGACCCAACTTGGGGCCCGTCTCTCACA
TCAGCACCAGCATCTCAGAAGGACCTTTGCACCTGATAATTATGTTGGGT
CCCGTCTCTCACATCAGCACCAGCATCTCAGAAGGACCTTTGCACCTTAT
AATTATGTTTCAATATCCACATATTCACATGTCATAACAGAAAGCAATAC
CTGATCTTTTTTTTTACAAGCTTTCGAGTCAAAAGCAACTTTCCAAGTAA
CCTCCGAGTCTGTTCCGGGCGGAACTCTGCTGTTCCACAGTAAACTGTGA
AGTTAACTGTTTATCTGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAA
CAAATACGCACACAACAAGG

protein sequence of jgi.p|Nanoce1779_2|535816

>mRNA_1593-protein ID=mRNA_1593-protein|Name=jgi.p|Nanoce1779_2|535816|organism=Nannochloropsis oceanica|type=polypeptide|length=375bp
MSWGGLGGQTLGSTQQPAAASDLKLPHTQADGISSLAFAPSDTLNLVAAG
SWDNSVRLWNLQEQASQGLGMPSQPNIMATPIGEIKHQAAVLDVCMSAEG
NVFSGGCDNKAMMWTPNPAGGPPQTQQIAEHSAPIKCIAHVPQLPCVITG
SWDQTVKFWDMRSPSPAHQLQLPHKVLTMDCRYPFLCVGTSNKEVYVYNL
AGGIRPHKPGGAPIQSQIKAFQTRTLSMFPDCSGFAIGNIEGRVAIHYID
HRQGDKTVEFAYKCHRVDAKESPNKTAEIHAVNAISFHNRYGTFATAGAD
GSYAFWDKDKRQRLKPPTRMNAPISCASFNQRGDLYGYAVSYDWSKGSEH
YNKQGPNDIYIHMVKEDEIKPKKK*

mRNA from alignment at scaffold_1:1030419..1032388+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1593 ID=mRNA_1593|Name=jgi.p|Nanoce1779_2|535816|organism=Nannochloropsis oceanica|type=mRNA|length=1970bp|location=Sequence derived from alignment at scaffold_1:1030419..1032388+ (Nannochloropsis oceanica)
CAATACTCCAAACTCCGCGAATGTACCCTACTACCACATGGTCGGGCATC
CTTCATTGTAGTTCTTGCCCTGCGGTCGGTGGGGCGCGACCTGAAATTTC
ACGTCTCACGCAACACCATTATTCCCGTCACAGGCCCCTCCTTCTTTACG
TCCTCCTTATTGCGCTCGCGGCCATCACCGACCACTTCCATCGTCCATCT
ACAGCATCATCATGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGC
ACGCAGCAGCCTGCCGCGGCATCAGACCTAAAGCTCCCACACACGCAAGC
TGATGGCATCTCGTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGG
TAGCGGCAGGATCATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAA
CAAGCCTCTCAAGGTTTGGGCATGCCATCACAGCCTAATATCATGGCTAC
ACCCATCGGTGAGATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGT
CAGCCGAGGGCAACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATG
TGGACTCCTAACCCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGA
ACACAGCGCACCGATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTG
TCATCACAGGTTCCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCA
CCCTCTCCCGCGCATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGA
CTGCCGCTACCCTTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATG
TCTATAATCTGGCCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCT
ATTCAGTCGCAGATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCC
TGATTGCTCGGGATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCC
ATTACATTGATCATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAA
TGCCACAGGGTGGACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCA
CGCCGTCAATGCCATTTCGTTCCACAATAGATACGGTACATTTGCCACAG
CGGGCGCAGATGGTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGG
CTGAAGCCACCGACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAA
TCAACGAGGGGACTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGG
GTTCAGAGCATTACAATAAGCAGGGGCCCAATGATATTTATATTCACATG
GTGAAGGAAGATGAGATTAAACCCAAGAAGAAGTAGAGTCGGTGGGGTTG
GAGGGTGGTGGTTAAAAAGCAACAGCGCTTGTATAAATACTGACTCTGGC
TGGTAATGGTGCTGGTTTGTATTCTCCGTCTTGCCTATTTAATGTCATGA
GCTGACTATCGAGGAAGCCCTTCTGACGGGACGATGCCCTCTATTAAATC
TAACCGAGCGGCTAAGTCGCCTCATTTTGTAATTTCGGACACTTGGCTGT
CTTTTGGCGGCTCGTCCCATCAGGCCCTACCATTCTCCGAGTCTTCGTCG
GCGAGAGCGGGACCAAAGAGCGGGACCCAACTTGGGGCCCGTCTCTCACA
TCAGCACCAGCATCTCAGAAGGACCTTTGCACCTGATAATTATGTTGGGT
CCCGTCTCTCACATCAGCACCAGCATCTCAGAAGGACCTTTGCACCTTAT
AATTATGTTTCAATATCCACATATTCACATGTCATAACAGAAAGCAATAC
CTGATCTTTTTTTTTACAAGCTTTCGAGTCAAAAGCAACTTTCCAAGTAA
CCTCCGAGTCTGTTCCGGGCGGAACTCTGCTGTTCCACAGTAAACTGTGA
AGTTAACTGTTTATCTGTTTACTACTTTCTTTACTCCCTTTCTTCTTAAA
CAAATACGCACACAACAAGG

Coding sequence (CDS) from alignment at scaffold_1:1030419..1032388+

>mRNA_1593 ID=mRNA_1593|Name=jgi.p|Nanoce1779_2|535816|organism=Nannochloropsis oceanica|type=CDS|length=1125bp|location=Sequence derived from alignment at scaffold_1:1030419..1032388+ (Nannochloropsis oceanica)
ATGTCGTGGGGCGGTTTGGGGGGACAGACACTGGGGAGCACGCAGCAGCC
TGCCGCGGCATCAGACCTAAAGCTCCCACACACGCAAGCTGATGGCATCT
CGTCCCTGGCCTTTGCGCCGTCCGACACCCTGAACCTGGTAGCGGCAGGA
TCATGGGATAATTCCGTCCGCCTCTGGAATTTGCAAGAACAAGCCTCTCA
AGGTTTGGGCATGCCATCACAGCCTAATATCATGGCTACACCCATCGGTG
AGATAAAGCACCAAGCTGCTGTACTGGACGTATGCATGTCAGCCGAGGGC
AACGTCTTTTCCGGAGGCTGCGACAACAAGGCCATGATGTGGACTCCTAA
CCCCGCCGGCGGCCCACCACAAACCCAGCAAATTGCCGAACACAGCGCAC
CGATCAAATGCATTGCCCACGTGCCCCAGCTCCCCTGTGTCATCACAGGT
TCCTGGGACCAGACCGTCAAGTTCTGGGATATGAGGTCACCCTCTCCCGC
GCATCAGCTCCAGCTTCCTCACAAAGTTCTCACGATGGACTGCCGCTACC
CTTTTTTATGCGTGGGTACATCGAACAAAGAAGTCTATGTCTATAATCTG
GCCGGGGGCATTCGCCCGCATAAGCCAGGAGGGGCGCCTATTCAGTCGCA
GATCAAGGCGTTCCAGACCCGGACATTGAGCATGTTTCCTGATTGCTCGG
GATTCGCCATTGGGAATATCGAGGGACGTGTCGCAATCCATTACATTGAT
CATCGTCAGGGGGATAAAACGGTGGAGTTTGCGTACAAATGCCACAGGGT
GGACGCAAAGGAAAGTCCGAATAAGACCGCGGAGATCCACGCCGTCAATG
CCATTTCGTTCCACAATAGATACGGTACATTTGCCACAGCGGGCGCAGAT
GGTTCGTACGCGTTCTGGGATAAGGATAAGCGGCAGCGGCTGAAGCCACC
GACGAGGATGAATGCCCCCATTTCGTGTGCGTCGTTTAATCAACGAGGGG
ACTTGTATGGGTATGCCGTGAGTTACGATTGGAGTAAGGGTTCAGAGCAT
TACAATAAGCAGGGGCCCAATGATATTTATATTCACATGGTGAAGGAAGA
TGAGATTAAACCCAAGAAGAAGTAG

Synonyms

Publications