jgi.p|Nanoce1779_2|572818, mRNA_1592 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572818
Unique Name	mRNA_1592
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2323
Alignment location	scaffold_1:1026558..1028880 -

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Properties


Property Name	Value
TranscriptId	572904
Track	FilteredModels2
ProteinId	572818

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1026558..1028880 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572818	gene_1592	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572818	mRNA_1592-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1592	CDS_1592	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1026558..1028880-
coding sequence from alignment at scaffold_1:1026558..1028880-

mRNA sequence

>mRNA_1592 ID=mRNA_1592|Name=jgi.p|Nanoce1779_2|572818|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAGCAGTATCAACTTCCATCAAAAAGGGGGAAGAAACTGAT
AATCAAGAAGAGAGAGGGCTGGAGGGATTGGATGGACCGACGCAACACCT
GAAGGCGCAGTTGCTGGAACGCGAGCTCACAGTGAAGGAGAAAAGCATCC
TCCTTGAGCGGTACCAGATCGCGCTGGCGACGCTTACCAGTGAGCGCGAT
TCGTTGCAGCAACAGGTTGGGGCCCTGCTTGTGGAGAAGGAGGGATTGGT
AGCAGCGGTGGAAAAGCTGACGACAAGCAGCAGCACACTAGAGGCAAGTC
GAGAGGAGGTTGTGAGGGAAGGGAAGGAGCTGAAGGAGGAATGTGCGAAG
GTGAAGGCGGATCTGATGGTGTTGGAAAAAGCGCAACGGACACACGACGA
TCAAATACGGAGCATCCGACACGAGGCAGAGGAGACGGTGAAACGAGTGA
AATCCGATGCTGAGACGGAATTACGAACTGCTCGCTTCTCCCTGCAAGAA
GCTGAGAAAGCTCAAGGACAAGCGGAGAAAACTGCAGCGAATTTAAGGGC
CCAAATGGAGGGATTACATCGGTCTTTGACTCAAGGTACAGAAGAGAATA
GAGAGACGGTGGCCGCTCTGGAGAAGGAGCGAGGGCAGCTTACGGCTGAA
TTGGAGTTGGAGAGGGAAAACGGACAGGAACGCCGGAGGCAAATGAAGCA
GTACCTCGAGACACTTACGAAGGAAAAGCAAGAGAGGGAGGCGGAGCTAG
CAGTGTCGACCACGGCTCTGGCAGCCGCTAGGCGAGAGCAGGGAGAGTTG
GAGGAAATGGTGCAGGCGTTGCAGGAACGGTTGGCGATACAGGTGGAGAC
GAACGAAGGGGAAGTTCGTCGGTTGGAGGAGCGACTACTGGAGGAGGAAA
GGAGGCATGCGGAGACCTTGGCGGACAAGGATGTGGAGATTGGACGATTG
AGAGAGGAGCAGATCACTCGACTATCGAGTACGGCACGGCGGTCGGAGGA
GATGGAGAATCAGCTGAAGGCAGTGGAGGCTGAGACGGCCGCACATAAGC
AGAAGAGACTCGCGGCGAAAAATGAGATGATTTCATTGGCCCAGGCCTTG
GAGGATTTGACGACGACATCAAGGTTAATGGAGGAGAGTATGGAACATAC
GTTGATTCCAAGATGCCTTGAACAGCTCTCATTGCTTGACAGGGCGATTG
ATCAGGTGGACGCGGCGGCGTGGCAGTTGGCGAGGAGAGGTCCTGGAGGA
GGAGGGGGGGAACATTCGTCTTTATCCTTAACAAGAACAATGGGGGCGGA
TGGCCGAACACAGAGTCGTATTTTAGGGGTCGAGATGGGGCGTCTTAATA
CTGGAGTCGGTGGACGTAGAGGAGGCCGTGGGAATGGAGGTGGGAGCAAA
AGGGGTCTTGCTCGCGCGCGTAGTCCGTCCGGGGATCGTTTACTGCGAAA
GGAGGAAGATGAAGAGGAGGACAAAATTGATCATGACGCGCAGCTCTTGT
CGGGAAGAGATAAGGGTATTGATGCTGGAAGTGGTGCGGGAGGAGGCCGT
GACCATCGTGCTCAGACCAAGTCCATGCTGACGATGGAGCGCCTAGCAAG
GTTGGATATAGAGACAGGACGAGTCTCGGCGGGTGTGCAAATGTTGGCGC
ACAGCTTGGAGCGGATGCAACGGGCGCTGGAGGCATTGACAGAGGAAGGA
TTTGAGACCCATAGCAGCGCACATGATGTGGTGTCTTTGTGTAGCAAGGT
GTTGGGGGAGTGTTTCTCGTTCATGCGGCAGACGACCGCGGTGAACGTGG
CCGCGACTGTTGCGACCGGGGCGGCTTCTTCTTCATCGCCGTCATATAGG
GGACAAAGATCTGCCCGCATGCCTTATGAGGCCGTACTGCGAGAGGAGGA
GGAGAATAAGGAGGAGGGGGAGGAGGATCGCGTGATTGACGTGGTTTAGA
GGGGATAGATAGGAAGGCAGGAGAAAGTCTTCGAATAGATATATGACAAT
GCGGTGTGTGCATTTGCACACACGAAATATATAGAGCATGAATGATTGAT
TCGCCGAAGTTGACCGACACTGTGCCGTTCTGAGCATGACACCCCCATGT
TCTGCACTTCAAACTTCTCGGGGCTTGTACGGCACTGACACATGTATGAC
CGTCGCCGACCACAACAATTTGTAGAAAAATCAATATTCTCCTACCTGGC
CCACCAGCACCGTATTTCTTAATGGAAAGGGAAAAAGAAGCAATCTTTAC
AGCGATAAACCCCTCCCCCCCCC

protein sequence of jgi.p|Nanoce1779_2|572818

>mRNA_1592-protein ID=mRNA_1592-protein|Name=jgi.p|Nanoce1779_2|572818|organism=Nannochloropsis oceanica|type=polypeptide|length=528bp
MVLEKAQRTHDDQIRSIRHEAEETVKRVKSDAETELRTARFSLQEAEKAQ
GQAEKTAANLRAQMEGLHRSLTQGTEENRETVAALEKERGQLTAELELER
ENGQERRRQMKQYLETLTKEKQEREAELAVSTTALAAARREQGELEEMVQ
ALQERLAIQVETNEGEVRRLEERLLEEERRHAETLADKDVEIGRLREEQI
TRLSSTARRSEEMENQLKAVEAETAAHKQKRLAAKNEMISLAQALEDLTT
TSRLMEESMEHTLIPRCLEQLSLLDRAIDQVDAAAWQLARRGPGGGGGEH
SSLSLTRTMGADGRTQSRILGVEMGRLNTGVGGRRGGRGNGGGSKRGLAR
ARSPSGDRLLRKEEDEEEDKIDHDAQLLSGRDKGIDAGSGAGGGRDHRAQ
TKSMLTMERLARLDIETGRVSAGVQMLAHSLERMQRALEALTEEGFETHS
SAHDVVSLCSKVLGECFSFMRQTTAVNVAATVATGAASSSSPSYRGQRSA
RMPYEAVLREEEENKEEGEEDRVIDVV*

mRNA from alignment at scaffold_1:1026558..1028880-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1592 ID=mRNA_1592|Name=jgi.p|Nanoce1779_2|572818|organism=Nannochloropsis oceanica|type=mRNA|length=2323bp|location=Sequence derived from alignment at scaffold_1:1026558..1028880- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAACAACAACAGCAGTATCAACTTCCATCAAAAAGGGGGAAGAAACTGAT
AATCAAGAAGAGAGAGGGCTGGAGGGATTGGATGGACCGACGCAACACCT
GAAGGCGCAGTTGCTGGAACGCGAGCTCACAGTGAAGGAGAAAAGCATCC
TCCTTGAGCGGTACCAGATCGCGCTGGCGACGCTTACCAGTGAGCGCGAT
TCGTTGCAGCAACAGGTTGGGGCCCTGCTTGTGGAGAAGGAGGGATTGGT
AGCAGCGGTGGAAAAGCTGACGACAAGCAGCAGCACACTAGAGGCAAGTC
GAGAGGAGGTTGTGAGGGAAGGGAAGGAGCTGAAGGAGGAATGTGCGAAG
GTGAAGGCGGATCTGATGGTGTTGGAAAAAGCGCAACGGACACACGACGA
TCAAATACGGAGCATCCGACACGAGGCAGAGGAGACGGTGAAACGAGTGA
AATCCGATGCTGAGACGGAATTACGAACTGCTCGCTTCTCCCTGCAAGAA
GCTGAGAAAGCTCAAGGACAAGCGGAGAAAACTGCAGCGAATTTAAGGGC
CCAAATGGAGGGATTACATCGGTCTTTGACTCAAGGTACAGAAGAGAATA
GAGAGACGGTGGCCGCTCTGGAGAAGGAGCGAGGGCAGCTTACGGCTGAA
TTGGAGTTGGAGAGGGAAAACGGACAGGAACGCCGGAGGCAAATGAAGCA
GTACCTCGAGACACTTACGAAGGAAAAGCAAGAGAGGGAGGCGGAGCTAG
CAGTGTCGACCACGGCTCTGGCAGCCGCTAGGCGAGAGCAGGGAGAGTTG
GAGGAAATGGTGCAGGCGTTGCAGGAACGGTTGGCGATACAGGTGGAGAC
GAACGAAGGGGAAGTTCGTCGGTTGGAGGAGCGACTACTGGAGGAGGAAA
GGAGGCATGCGGAGACCTTGGCGGACAAGGATGTGGAGATTGGACGATTG
AGAGAGGAGCAGATCACTCGACTATCGAGTACGGCACGGCGGTCGGAGGA
GATGGAGAATCAGCTGAAGGCAGTGGAGGCTGAGACGGCCGCACATAAGC
AGAAGAGACTCGCGGCGAAAAATGAGATGATTTCATTGGCCCAGGCCTTG
GAGGATTTGACGACGACATCAAGGTTAATGGAGGAGAGTATGGAACATAC
GTTGATTCCAAGATGCCTTGAACAGCTCTCATTGCTTGACAGGGCGATTG
ATCAGGTGGACGCGGCGGCGTGGCAGTTGGCGAGGAGAGGTCCTGGAGGA
GGAGGGGGGGAACATTCGTCTTTATCCTTAACAAGAACAATGGGGGCGGA
TGGCCGAACACAGAGTCGTATTTTAGGGGTCGAGATGGGGCGTCTTAATA
CTGGAGTCGGTGGACGTAGAGGAGGCCGTGGGAATGGAGGTGGGAGCAAA
AGGGGTCTTGCTCGCGCGCGTAGTCCGTCCGGGGATCGTTTACTGCGAAA
GGAGGAAGATGAAGAGGAGGACAAAATTGATCATGACGCGCAGCTCTTGT
CGGGAAGAGATAAGGGTATTGATGCTGGAAGTGGTGCGGGAGGAGGCCGT
GACCATCGTGCTCAGACCAAGTCCATGCTGACGATGGAGCGCCTAGCAAG
GTTGGATATAGAGACAGGACGAGTCTCGGCGGGTGTGCAAATGTTGGCGC
ACAGCTTGGAGCGGATGCAACGGGCGCTGGAGGCATTGACAGAGGAAGGA
TTTGAGACCCATAGCAGCGCACATGATGTGGTGTCTTTGTGTAGCAAGGT
GTTGGGGGAGTGTTTCTCGTTCATGCGGCAGACGACCGCGGTGAACGTGG
CCGCGACTGTTGCGACCGGGGCGGCTTCTTCTTCATCGCCGTCATATAGG
GGACAAAGATCTGCCCGCATGCCTTATGAGGCCGTACTGCGAGAGGAGGA
GGAGAATAAGGAGGAGGGGGAGGAGGATCGCGTGATTGACGTGGTTTAGA
GGGGATAGATAGGAAGGCAGGAGAAAGTCTTCGAATAGATATATGACAAT
GCGGTGTGTGCATTTGCACACACGAAATATATAGAGCATGAATGATTGAT
TCGCCGAAGTTGACCGACACTGTGCCGTTCTGAGCATGACACCCCCATGT
TCTGCACTTCAAACTTCTCGGGGCTTGTACGGCACTGACACATGTATGAC
CGTCGCCGACCACAACAATTTGTAGAAAAATCAATATTCTCCTACCTGGC
CCACCAGCACCGTATTTCTTAATGGAAAGGGAAAAAGAAGCAATCTTTAC
AGCGATAAACCCCTCCCCCCCCC

Coding sequence (CDS) from alignment at scaffold_1:1026558..1028880-

>mRNA_1592 ID=mRNA_1592|Name=jgi.p|Nanoce1779_2|572818|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_1:1026558..1028880- (Nannochloropsis oceanica)
ATGGTGTTGGAAAAAGCGCAACGGACACACGACGATCAAATACGGAGCAT
CCGACACGAGGCAGAGGAGACGGTGAAACGAGTGAAATCCGATGCTGAGA
CGGAATTACGAACTGCTCGCTTCTCCCTGCAAGAAGCTGAGAAAGCTCAA
GGACAAGCGGAGAAAACTGCAGCGAATTTAAGGGCCCAAATGGAGGGATT
ACATCGGTCTTTGACTCAAGGTACAGAAGAGAATAGAGAGACGGTGGCCG
CTCTGGAGAAGGAGCGAGGGCAGCTTACGGCTGAATTGGAGTTGGAGAGG
GAAAACGGACAGGAACGCCGGAGGCAAATGAAGCAGTACCTCGAGACACT
TACGAAGGAAAAGCAAGAGAGGGAGGCGGAGCTAGCAGTGTCGACCACGG
CTCTGGCAGCCGCTAGGCGAGAGCAGGGAGAGTTGGAGGAAATGGTGCAG
GCGTTGCAGGAACGGTTGGCGATACAGGTGGAGACGAACGAAGGGGAAGT
TCGTCGGTTGGAGGAGCGACTACTGGAGGAGGAAAGGAGGCATGCGGAGA
CCTTGGCGGACAAGGATGTGGAGATTGGACGATTGAGAGAGGAGCAGATC
ACTCGACTATCGAGTACGGCACGGCGGTCGGAGGAGATGGAGAATCAGCT
GAAGGCAGTGGAGGCTGAGACGGCCGCACATAAGCAGAAGAGACTCGCGG
CGAAAAATGAGATGATTTCATTGGCCCAGGCCTTGGAGGATTTGACGACG
ACATCAAGGTTAATGGAGGAGAGTATGGAACATACGTTGATTCCAAGATG
CCTTGAACAGCTCTCATTGCTTGACAGGGCGATTGATCAGGTGGACGCGG
CGGCGTGGCAGTTGGCGAGGAGAGGTCCTGGAGGAGGAGGGGGGGAACAT
TCGTCTTTATCCTTAACAAGAACAATGGGGGCGGATGGCCGAACACAGAG
TCGTATTTTAGGGGTCGAGATGGGGCGTCTTAATACTGGAGTCGGTGGAC
GTAGAGGAGGCCGTGGGAATGGAGGTGGGAGCAAAAGGGGTCTTGCTCGC
GCGCGTAGTCCGTCCGGGGATCGTTTACTGCGAAAGGAGGAAGATGAAGA
GGAGGACAAAATTGATCATGACGCGCAGCTCTTGTCGGGAAGAGATAAGG
GTATTGATGCTGGAAGTGGTGCGGGAGGAGGCCGTGACCATCGTGCTCAG
ACCAAGTCCATGCTGACGATGGAGCGCCTAGCAAGGTTGGATATAGAGAC
AGGACGAGTCTCGGCGGGTGTGCAAATGTTGGCGCACAGCTTGGAGCGGA
TGCAACGGGCGCTGGAGGCATTGACAGAGGAAGGATTTGAGACCCATAGC
AGCGCACATGATGTGGTGTCTTTGTGTAGCAAGGTGTTGGGGGAGTGTTT
CTCGTTCATGCGGCAGACGACCGCGGTGAACGTGGCCGCGACTGTTGCGA
CCGGGGCGGCTTCTTCTTCATCGCCGTCATATAGGGGACAAAGATCTGCC
CGCATGCCTTATGAGGCCGTACTGCGAGAGGAGGAGGAGAATAAGGAGGA
GGGGGAGGAGGATCGCGTGATTGACGTGGTTTAG

Synonyms

Publications