jgi.p|Nanoce1779_2|667498, mRNA_1591 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667498
Unique NamemRNA_1591
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1566
Alignment locationscaffold_1:1024988..1026553 -

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Properties
Property NameValue
TranscriptId667584
TrackFilteredModels2
ProteinId667498
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1024988..1026553 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667498gene_1591Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667498mRNA_1591-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1591CDS_1591Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1591 ID=mRNA_1591|Name=jgi.p|Nanoce1779_2|667498|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp
CGGCCCGTTTATGCCTGGTCCAAAATCATACCCGGCATCGGCAACGGCAT
CAGGTTAAAGGTCAAGCAGACAGCCCATCTACACACTTGGGGCAGCAACG
CAGCACCATGAGCCCTTGGTCCGGCACATTTCTTGCACCCTTCAACAATG
GACATGCGTCTGGAACCTTAGTCTTGTCGCTTTGATCTGGTTACGACAAA
TGTACTCACCTAAGCCTTCCCACTCCACTCTCACCACCGAAAGAGTACTT
CGCCACAAGTTTGTGTACGAACCACCCACGCATTCAACAGCAGCTACCAT
GTCCCGCTTCGACATGGACGATGACTCAGATGAAGACTCTTCGGGCGGCC
TGAGCAGCCAGCTCCCGACAGAACCTCCCTTTCTTGCGTACATGCATGAC
ACCGAGGCAGGCGAACAAGACATCCGGGACTTCTTCGGCTCCGAGCTCGA
GGTCATCTCCGTGACGGTGGCCAAGAACGAAGCAAAAGTCGAATTCAAGG
ACCGCGATACTTTGGCCCGCTCCTTGTTTTACGGGGGGAGATTGCTGAAG
GGACGCGAGGCAAAGATTGCCCTTTCGGCTGGAGATGCCCCTCCTCCCCA
CCTTACTCCGCCGCCTCCTCCTCCGCCTCCTCCCGCGCCTGTCGCGGAAA
ACATTTCGTCCTTTTCAGCGCAAAACGGCAACGATGGTGGCGGCCGTGGT
GCGGGAGCTGGGCGTGGGAGGGGTGGAGGAGGAAAGTGGTCAAGTGGGAG
GGAGAGCAGGGACGCGGAAGGAAGGAGGGAGGGAGGGAGAGTAGGACGCA
GTGGACCCCGTAGCAGCATTTTTGGACGGGACAGTGCACCTAGGCGTCCG
CCGCTTTCAGCAAAACACGAAGATGGGGAAGGGGGGGAGAAGGAAGGGGA
GGCTGCAGAGGGGGGCGAGAAGAAGGAGCGCCCCCGCTTGCAATTGAAGC
CACGAAGCAAGCCATTGGGGGAAGGAGGGGGGGAGAGCGGGGCAAAGCCG
AGTATTTTTGGGGGAGGTAAGCCGCATGATGAGGTGGCATTCGAGAAAAA
ATGGCAGGAGAAGCACAAGGATGATCCGAAGCCCGTGTTGTCGGCGGGGG
AGGAGGACACCGGGGAGGGAGAGCGAGGGCCCAGTGGGAATAGGTACAGC
AAGCGGGGCGATAGGACATCGAGGCCGCCGGGATGGGAGGAAGGTGCAAC
GGGAGCAAGAGCGCTCACAGGAGGATCGACGCGGATGAGGAGTGGAAGTT
GGGGGAGTGGCAGGAAGGAGGGGGCGGAGGGAGGGCGAGGAGGAGCTGGA
GGACGGGGGGCAGCTGGATCTGGGCGTGGGCCAACCCCGAATAAAAAGCC
GACGGTGAAGAAGGCGGCTATAGGAGCGGAGGAATGGAAGGAGGTGGAGC
ATGTGACGGCGAAGAAGAGGGTTGAGGGACGGTCGCACAGGGGAGGAGGG
GAGGGAGGGGAAGAGGAGGATAAGATGACAAGGGCGGTGGGGGGCGCGTT
CGCGGCGTTGAACATGGATGAGGATAGTGACAGGGACTAAGGGATGATTG
AGCAGTTGAATGGGAG
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protein sequence of jgi.p|Nanoce1779_2|667498

>mRNA_1591-protein ID=mRNA_1591-protein|Name=jgi.p|Nanoce1779_2|667498|organism=Nannochloropsis oceanica|type=polypeptide|length=447bp
MYSPKPSHSTLTTERVLRHKFVYEPPTHSTAATMSRFDMDDDSDEDSSGG
LSSQLPTEPPFLAYMHDTEAGEQDIRDFFGSELEVISVTVAKNEAKVEFK
DRDTLARSLFYGGRLLKGREAKIALSAGDAPPPHLTPPPPPPPPPAPVAE
NISSFSAQNGNDGGGRGAGAGRGRGGGGKWSSGRESRDAEGRREGGRVGR
SGPRSSIFGRDSAPRRPPLSAKHEDGEGGEKEGEAAEGGEKKERPRLQLK
PRSKPLGEGGGESGAKPSIFGGGKPHDEVAFEKKWQEKHKDDPKPVLSAG
EEDTGEGERGPSGNRYSKRGDRTSRPPGWEEGATGARALTGGSTRMRSGS
WGSGRKEGAEGGRGGAGGRGAAGSGRGPTPNKKPTVKKAAIGAEEWKEVE
HVTAKKRVEGRSHRGGGEGGEEEDKMTRAVGGAFAALNMDEDSDRD*
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mRNA from alignment at scaffold_1:1024988..1026553-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1591 ID=mRNA_1591|Name=jgi.p|Nanoce1779_2|667498|organism=Nannochloropsis oceanica|type=mRNA|length=1566bp|location=Sequence derived from alignment at scaffold_1:1024988..1026553- (Nannochloropsis oceanica)
CGGCCCGTTTATGCCTGGTCCAAAATCATACCCGGCATCGGCAACGGCAT
CAGGTTAAAGGTCAAGCAGACAGCCCATCTACACACTTGGGGCAGCAACG
CAGCACCATGAGCCCTTGGTCCGGCACATTTCTTGCACCCTTCAACAATG
GACATGCGTCTGGAACCTTAGTCTTGTCGCTTTGATCTGGTTACGACAAA
TGTACTCACCTAAGCCTTCCCACTCCACTCTCACCACCGAAAGAGTACTT
CGCCACAAGTTTGTGTACGAACCACCCACGCATTCAACAGCAGCTACCAT
GTCCCGCTTCGACATGGACGATGACTCAGATGAAGACTCTTCGGGCGGCC
TGAGCAGCCAGCTCCCGACAGAACCTCCCTTTCTTGCGTACATGCATGAC
ACCGAGGCAGGCGAACAAGACATCCGGGACTTCTTCGGCTCCGAGCTCGA
GGTCATCTCCGTGACGGTGGCCAAGAACGAAGCAAAAGTCGAATTCAAGG
ACCGCGATACTTTGGCCCGCTCCTTGTTTTACGGGGGGAGATTGCTGAAG
GGACGCGAGGCAAAGATTGCCCTTTCGGCTGGAGATGCCCCTCCTCCCCA
CCTTACTCCGCCGCCTCCTCCTCCGCCTCCTCCCGCGCCTGTCGCGGAAA
ACATTTCGTCCTTTTCAGCGCAAAACGGCAACGATGGTGGCGGCCGTGGT
GCGGGAGCTGGGCGTGGGAGGGGTGGAGGAGGAAAGTGGTCAAGTGGGAG
GGAGAGCAGGGACGCGGAAGGAAGGAGGGAGGGAGGGAGAGTAGGACGCA
GTGGACCCCGTAGCAGCATTTTTGGACGGGACAGTGCACCTAGGCGTCCG
CCGCTTTCAGCAAAACACGAAGATGGGGAAGGGGGGGAGAAGGAAGGGGA
GGCTGCAGAGGGGGGCGAGAAGAAGGAGCGCCCCCGCTTGCAATTGAAGC
CACGAAGCAAGCCATTGGGGGAAGGAGGGGGGGAGAGCGGGGCAAAGCCG
AGTATTTTTGGGGGAGGTAAGCCGCATGATGAGGTGGCATTCGAGAAAAA
ATGGCAGGAGAAGCACAAGGATGATCCGAAGCCCGTGTTGTCGGCGGGGG
AGGAGGACACCGGGGAGGGAGAGCGAGGGCCCAGTGGGAATAGGTACAGC
AAGCGGGGCGATAGGACATCGAGGCCGCCGGGATGGGAGGAAGGTGCAAC
GGGAGCAAGAGCGCTCACAGGAGGATCGACGCGGATGAGGAGTGGAAGTT
GGGGGAGTGGCAGGAAGGAGGGGGCGGAGGGAGGGCGAGGAGGAGCTGGA
GGACGGGGGGCAGCTGGATCTGGGCGTGGGCCAACCCCGAATAAAAAGCC
GACGGTGAAGAAGGCGGCTATAGGAGCGGAGGAATGGAAGGAGGTGGAGC
ATGTGACGGCGAAGAAGAGGGTTGAGGGACGGTCGCACAGGGGAGGAGGG
GAGGGAGGGGAAGAGGAGGATAAGATGACAAGGGCGGTGGGGGGCGCGTT
CGCGGCGTTGAACATGGATGAGGATAGTGACAGGGACTAAGGGATGATTG
AGCAGTTGAATGGGAG
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Coding sequence (CDS) from alignment at scaffold_1:1024988..1026553-

>mRNA_1591 ID=mRNA_1591|Name=jgi.p|Nanoce1779_2|667498|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_1:1024988..1026553- (Nannochloropsis oceanica)
ATGTACTCACCTAAGCCTTCCCACTCCACTCTCACCACCGAAAGAGTACT
TCGCCACAAGTTTGTGTACGAACCACCCACGCATTCAACAGCAGCTACCA
TGTCCCGCTTCGACATGGACGATGACTCAGATGAAGACTCTTCGGGCGGC
CTGAGCAGCCAGCTCCCGACAGAACCTCCCTTTCTTGCGTACATGCATGA
CACCGAGGCAGGCGAACAAGACATCCGGGACTTCTTCGGCTCCGAGCTCG
AGGTCATCTCCGTGACGGTGGCCAAGAACGAAGCAAAAGTCGAATTCAAG
GACCGCGATACTTTGGCCCGCTCCTTGTTTTACGGGGGGAGATTGCTGAA
GGGACGCGAGGCAAAGATTGCCCTTTCGGCTGGAGATGCCCCTCCTCCCC
ACCTTACTCCGCCGCCTCCTCCTCCGCCTCCTCCCGCGCCTGTCGCGGAA
AACATTTCGTCCTTTTCAGCGCAAAACGGCAACGATGGTGGCGGCCGTGG
TGCGGGAGCTGGGCGTGGGAGGGGTGGAGGAGGAAAGTGGTCAAGTGGGA
GGGAGAGCAGGGACGCGGAAGGAAGGAGGGAGGGAGGGAGAGTAGGACGC
AGTGGACCCCGTAGCAGCATTTTTGGACGGGACAGTGCACCTAGGCGTCC
GCCGCTTTCAGCAAAACACGAAGATGGGGAAGGGGGGGAGAAGGAAGGGG
AGGCTGCAGAGGGGGGCGAGAAGAAGGAGCGCCCCCGCTTGCAATTGAAG
CCACGAAGCAAGCCATTGGGGGAAGGAGGGGGGGAGAGCGGGGCAAAGCC
GAGTATTTTTGGGGGAGGTAAGCCGCATGATGAGGTGGCATTCGAGAAAA
AATGGCAGGAGAAGCACAAGGATGATCCGAAGCCCGTGTTGTCGGCGGGG
GAGGAGGACACCGGGGAGGGAGAGCGAGGGCCCAGTGGGAATAGGTACAG
CAAGCGGGGCGATAGGACATCGAGGCCGCCGGGATGGGAGGAAGGTGCAA
CGGGAGCAAGAGCGCTCACAGGAGGATCGACGCGGATGAGGAGTGGAAGT
TGGGGGAGTGGCAGGAAGGAGGGGGCGGAGGGAGGGCGAGGAGGAGCTGG
AGGACGGGGGGCAGCTGGATCTGGGCGTGGGCCAACCCCGAATAAAAAGC
CGACGGTGAAGAAGGCGGCTATAGGAGCGGAGGAATGGAAGGAGGTGGAG
CATGTGACGGCGAAGAAGAGGGTTGAGGGACGGTCGCACAGGGGAGGAGG
GGAGGGAGGGGAAGAGGAGGATAAGATGACAAGGGCGGTGGGGGGCGCGT
TCGCGGCGTTGAACATGGATGAGGATAGTGACAGGGACTAA
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Synonyms
Publications