jgi.p|Nanoce1779_2|576403, mRNA_159 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576403
Unique NamemRNA_159
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length580
Alignment locationscaffold_3:406332..407445 -

Link to JBrowse

Properties
Property NameValue
TranscriptId576489
TrackFilteredModels2
ProteinId576403
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:406332..407445 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576403gene_159Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576403mRNA_159-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_159CDS_159Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_159 ID=mRNA_159|Name=jgi.p|Nanoce1779_2|576403|organism=Nannochloropsis oceanica|type=mRNA|length=580bp
ACAGGATAAGGACGGTGGATAGGGAGGAGGGGGGGCAGCCATGCGGGTCC
GCCTCCGCTACTTGACTTGCAAACTCGATCTCCCCCTGCAGGCCGATACC
GCTCGGAAGAAGACGACTGCGTTTGAAATCCTCAAGACCATCAAGGAATC
AATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCCCTGCTCAATTCTT
TGCAGATCCGGTACTATGATGAAGCCACGCACATCTTTATTTTGCGCTGC
TCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGACCCTACTTACTTC
CCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACTAGTAGCACTCGTA
CTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTCCGTGCGCACGTGT
CGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGAAAGCAGCAGCAGC
GGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCACGAAGAGGACGAGG
AGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCAAATTGAAGGGGCC
ATCCAAGGCGTGTAAAAAGAGACGACACAG
back to top

protein sequence of jgi.p|Nanoce1779_2|576403

>mRNA_159-protein ID=mRNA_159-protein|Name=jgi.p|Nanoce1779_2|576403|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MRVRLRYLTCKLDLPLQADTARKKTTAFEILKTIKESIQINFGDFGIAAL
LNSLQIRYYDEATHIFILRCSREGYRSAWAAMTLLTSLGGGNSSNSSSTS
STRTKASISVLRVSGSVRTCRTDAVEILVMAAKAAAAACVLQQQMEEVHE
EDEEWVKTKRIYYQTQIEGAIQGV*
back to top

mRNA from alignment at scaffold_3:406332..407445-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_159 ID=mRNA_159|Name=jgi.p|Nanoce1779_2|576403|organism=Nannochloropsis oceanica|type=mRNA|length=1114bp|location=Sequence derived from alignment at scaffold_3:406332..407445- (Nannochloropsis oceanica)
ACAGGATAAGGACGGTGGATAGGGAGGAGGGGGGGCAGCCATGCGGGTCC
GCCTCCGCTACTTGACTTGCAAACTCGATCTCCCCCTGCAGGCCGATACC
GCTCGGAAGAAGACGACTGCGTTTGAAATCCTCAAGACCATCAAGGTGAG
GGCACTGCACACGGAAGGCATAGAGTGGAGAGGGACAAGGGGGGGGGCAC
AGATATTTTCATGAGACCCGTCATCATCTCTCTCGACCTCCCGGCTGTCG
GGCTTTCGGTCCCCCTCACTCTCCACCACCCTGCCTCACGCTTCGCGATG
GTGGGTTGCGAACGACTCGCATATCCGAGACATTCAGTATAAGCTTGGAC
TGTTGACATGCCTGCAATGACTGTGCCAGTTGTTCATGCTTGTGCTTGTG
GTCTTGTGAGCAGTTTTGTGAGGCCCCTCGAGGAGAGATTTGAATTGCGC
ATGCCGAAGCAGGCTGAAACTGTACCGTCCAGAGCACTACACACACCCTA
TATATCATGTGCACTTGAACCACCTCAAGGCTTGTGCGGCTCTGACACCT
GTATGCTCGTTCTTGACCGTAATGAATCATTGGAAAATCTTCTCCACTCT
CTCGCTTGACCTCCGCACTCATCTTCCCCTCCCTCCCCACGCAACTATTC
TCACCTCTCCTCCACCGTACCACCCACAGGAATCAATCCAAATTAATTTT
GGTGACTTTGGAATAGCTGCCCTGCTCAATTCTTTGCAGATCCGGTACTA
TGATGAAGCCACGCACATCTTTATTTTGCGCTGCTCACGCGAAGGCTACC
GCTCCGCCTGGGCAGCCATGACCCTACTTACTTCCCTCGGTGGCGGTAAC
AGCAGTAACAGCAGCAGTACTAGTAGCACTCGTACTAAAGCAAGTATAAG
CGTGTTACGTGTTTCGGGCTCCGTGCGCACGTGTCGGACAGACGCGGTAG
AGATCCTGGTAATGGCTGCGAAAGCAGCAGCAGCGGCGTGTGTTTTGCAA
CAGCAGATGGAGGAAGTCCACGAAGAGGACGAGGAGTGGGTAAAAACCAA
GCGCATTTACTACCAGACGCAAATTGAAGGGGCCATCCAAGGCGTGTAAA
AAGAGACGACACAG
back to top

Coding sequence (CDS) from alignment at scaffold_3:406332..407445-

>mRNA_159 ID=mRNA_159|Name=jgi.p|Nanoce1779_2|576403|organism=Nannochloropsis oceanica|type=CDS|length=1050bp|location=Sequence derived from alignment at scaffold_3:406332..407445- (Nannochloropsis oceanica)
GAATCAATCCAAATTAATTTTGGTGACTTTGGAATAGCTGCCCTGCTCAA
TTCTTTGCAGATCCGGTACTATGATGAAGCCACGCACATCTTTATTTTGC
GCTGCTCACGCGAAGGCTACCGCTCCGCCTGGGCAGCCATGACCCTACTT
ACTTCCCTCGGTGGCGGTAACAGCAGTAACAGCAGCAGTACTAGTAGCAC
TCGTACTAAAGCAAGTATAAGCGTGTTACGTGTTTCGGGCTCCGTGCGCA
CGTGTCGGACAGACGCGGTAGAGATCCTGGTAATGGCTGCGAAAGCAGCA
GCAGCGGCGTGTGTTTTGCAACAGCAGATGGAGGAAGTCCACGAAGAGGA
CGAGGAGTGGGTAAAAACCAAGCGCATTTACTACCAGACGCAAATTGAAG
GGGCCATCCAAGGCGTGTAAATGCGGGTCCGCCTCCGCTACTTGACTTGC
AAACTCGATCTCCCCCTGCAGGCCGATACCGCTCGGAAGAAGACGACTGC
GTTTGAAATCCTCAAGACCATCAAGGAATCAATCCAAATTAATTTTGGTG
ACTTTGGAATAGCTGCCCTGCTCAATTCTTTGCAGATCCGGTACTATGAT
GAAGCCACGCACATCTTTATTTTGCGCTGCTCACGCGAAGGCTACCGCTC
CGCCTGGGCAGCCATGACCCTACTTACTTCCCTCGGTGGCGGTAACAGCA
GTAACAGCAGCAGTACTAGTAGCACTCGTACTAAAGCAAGTATAAGCGTG
TTACGTGTTTCGGGCTCCGTGCGCACGTGTCGGACAGACGCGGTAGAGAT
CCTGGTAATGGCTGCGAAAGCAGCAGCAGCGGCGTGTGTTTTGCAACAGC
AGATGGAGGAAGTCCACGAAGAGGACGAGGAGTGGGTAAAAACCAAGCGC
ATTTACTACCAGACGCAAATTGAAGGGGCCATCCAAGGCGTGTAAATGCG
GGTCCGCCTCCGCTACTTGACTTGCAAACTCGATCTCCCCCTGCAGGCCG
ATACCGCTCGGAAGAAGACGACTGCGTTTGAAATCCTCAAGACCATCAAG
back to top
Synonyms
Publications