jgi.p|Nanoce1779_2|667496, mRNA_1589 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|667496
Unique NamemRNA_1589
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1310
Alignment locationscaffold_1:1021551..1023156 -

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Properties
Property NameValue
TranscriptId667582
TrackFilteredModels2
ProteinId667496
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1021551..1023156 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667496gene_1589Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|667496mRNA_1589-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1589CDS_1589Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1589 ID=mRNA_1589|Name=jgi.p|Nanoce1779_2|667496|organism=Nannochloropsis oceanica|type=mRNA|length=1310bp
GATCGTTAAACATCGCCCTCAAAGCTCTCCCATGCCCCTTCTTCTTCGCC
CTCCCCCATCCAACACCCTGCACTGCACCACCCTTGACCGCGCCCCGCGC
ACCATTCTCCCCTCGCCCCTTCTCCCTTTCCTTCTTCTCTGCATATTCTT
CTGCATGCCATACGCCTCCTTGTCCCATCCCTGCCTCCTCGTCTTTGTGG
TGAGAACGAGCCGGCCTCTTCTGCGGAAGATATTCGACGGACGGTGCCTG
TGCAACACCACCCTCATCCGGCCAGCGGCACCACACCCACTCGCACACAA
GCAGCACATGCATACGTAGCCCTTTGACAGGCAGCGGCGACCGCTTCTGC
GCAACCCTCGTCTTCTTCCACTTATCCCCCTCATCCTCCCATCATCACTT
CGTCTCTTCACCTGCACATCTACCATCAACACCAACAACCATACACTACT
TCTTCCATTTTCATCACCACCATCACGCAGCCATAATAACAACAAGAAAA
GCAAGCAAACATGCCTGAAGCCAAGGTGTACGTGGGGAATCTTGACCCCG
ATGCCACGGACCGTGACCTCGACAAAGAGTTTGCCCGGTATGGCAAGATT
GCGCACATTTGGATTGCCCGCAAGCCACCTGGGTTCGCTTTCGTAACCTA
TGAAGATGAGCGGGATGCCATGGACGCTTGTGCAGAGCTGAATGGCAAGT
CCATCCTCGCTCAGCGTGTGCGTGTCGAGATTTCTCAGAACACCCGCGGG
GGGGGAGGACGAGGGGGAGGTGGGGGCCGGGGGCGAGATTATGGCGGGCG
GGATTACGGAGTCCGGCACGGAATGGCGGTGGGGGGCGGAGCCGCAGTCC
AAGCCCGCGTGGTGGAGGATATGGAGCGGGAGGAAGAGGTCGGAGCCCTA
GCCCAGGTCGTCGCTCTCTCTCCCCTCCTCGCGGACGCTCGCCTCGGTAA
AGGGTAGGGAAGACCGCTGATACCGGTTGAGAAATAAGAGGGGGGAAAGT
CTTGCTTTTCTGATTTCTCCATTTCCCCCCCCGTCCATTAATCACTACCA
GTCTAGGATGTGTGTGTATGTGTTAGTATGAGGGAGAAGGTGTAAATGTG
TTCTCTGCGTCATATAAAACACAAGAGGTAGCGGAAGGCAGGGCATCAGC
TGCATCCCAAAAAGAATTAGAGGACTTCAGATGCTGGCCTCTTGCTCGCT
AACGGATAACTTCTCATTTTGCTGTTTTGCGGCCTGTGTGGGTATTTCAA
CAATTCGCCCACGGGAAAGGCAAAGACCACACAAACAACAATACCTAAAT
CCGACCCAGC
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protein sequence of jgi.p|Nanoce1779_2|667496

>mRNA_1589-protein ID=mRNA_1589-protein|Name=jgi.p|Nanoce1779_2|667496|organism=Nannochloropsis oceanica|type=polypeptide|length=149bp
MPEAKVYVGNLDPDATDRDLDKEFARYGKIAHIWIARKPPGFAFVTYEDE
RDAMDACAELNGKSILAQRVRVEISQNTRGGGGRGGGGGRGRDYGGRDYG
VRHGMAVGGGAAVQARVVEDMEREEEVGALAQVVALSPLLADARLGKG*
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mRNA from alignment at scaffold_1:1021551..1023156-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1589 ID=mRNA_1589|Name=jgi.p|Nanoce1779_2|667496|organism=Nannochloropsis oceanica|type=mRNA|length=1606bp|location=Sequence derived from alignment at scaffold_1:1021551..1023156- (Nannochloropsis oceanica)
GATCGTTAAACATCGCCCTCAAAGCTCTCCCATGCCCCTTCTTCTTCGCC
CTCCCCCATCCAACACCCTGCACTGCACCACCCTTGACCGCGCCCCGCGC
ACCATTCTCCCCTCGCCCCTTCTCCCTTTCCTTCTTCTCTGCATATTCTT
CTGCATGCCATACGCCTCCTTGTCCCATCCCTGCCTCCTCGTCTTTGTGG
TGAGAACGAGCCGGCCTCTTCTGCGGAAGATATTCGACGGACGGTGCCTG
TGCAACACCACCCTCATCCGGCCAGCGGCACCACACCCACTCGCACACAA
GCAGCACATGCATACGTAGCCCTTTGACAGGCAGCGGCGACCGCTTCTGC
GCAACCCTCGTCTTCTTCCACTTATCCCCCTCATCCTCCCATCATCACTT
CGTCTCTTCACCTGCACATCTACCATCAACACCAACAACCATACACTACT
TCTTCCATTTTCATCACCACCATCACGCAGCCATAATAACAACAAGAAAA
GCAAGCAAACATGCCTGAAGCCAAGGTGTACGTGGGGAATCTTGACCCCG
ATGCCACGGACCGTGACCTCGACAAAGAGTTTGCCCGGTATGGCAAGATT
GCGCACATTTGGATTGCCCGCAAGCCACCTGGTAAGTCAGAAGAAGATAG
AGCCATGCAACGAATGGAAAGTGACAAATGAGTCGATTTTAGTCAGCGAA
TAGAAAAGCGAAGTAAATGAGCATTCTAATCACCCCCCCTCCCCCCCCCC
CTTCCTTGTCCCACTCGAAATAGGGTTCGCTTTCGTAACCTATGAAGATG
AGCGGGATGCCATGGACGCTTGTGCAGAGCTGAATGGCAAGTCCATCCTC
GCTCAGCGTGTGCGTGTCGAGATTTCTCAGAACACCCGCGGGGGGGGAGG
ACGAGGGGGAGGTGGGGGCCGGGGGCGAGATTATGGCGGGCGGGATTACG
GAGGTGGGGGCGGACGACGCGATGACCGATACGGAGGGGGGGGGCGATCT
CGTTCCCCTCCCCGTCGTCAGCGCAGTGATTCACGTGATCGCCGAGCGGT
TCGTCGTTCTCCTTCTTACGACCGCGTGGCTCCTCATGCTCGTTCTCGTT
CTCGCAGTCCGGCACGGAATGGCGGTGGGGGGCGGAGCCGCAGTCCAAGC
CCGCGTGGTGGAGGATATGGAGCGGGAGGAAGAGGTCGGAGCCCTAGCCC
AGGTCGTCGCTCTCTCTCCCCTCCTCGCGGACGCTCGCCTCGGTAAAGGG
TAGGGAAGACCGCTGATACCGGTTGAGAAATAAGAGGGGGGAAAGTCTTG
CTTTTCTGATTTCTCCATTTCCCCCCCCGTCCATTAATCACTACCAGTCT
AGGATGTGTGTGTATGTGTTAGTATGAGGGAGAAGGTGTAAATGTGTTCT
CTGCGTCATATAAAACACAAGAGGTAGCGGAAGGCAGGGCATCAGCTGCA
TCCCAAAAAGAATTAGAGGACTTCAGATGCTGGCCTCTTGCTCGCTAACG
GATAACTTCTCATTTTGCTGTTTTGCGGCCTGTGTGGGTATTTCAACAAT
TCGCCCACGGGAAAGGCAAAGACCACACAAACAACAATACCTAAATCCGA
CCCAGC
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Coding sequence (CDS) from alignment at scaffold_1:1021551..1023156-

>mRNA_1589 ID=mRNA_1589|Name=jgi.p|Nanoce1779_2|667496|organism=Nannochloropsis oceanica|type=CDS|length=1341bp|location=Sequence derived from alignment at scaffold_1:1021551..1023156- (Nannochloropsis oceanica)
TCCGGCACGGAATGGCGGTGGGGGGCGGAGCCGCAGTCCAAGCCCGCGTG
GTGGAGGATATGGAGCGGGAGGAAGAGGTCGGAGCCCTAGCCCAGGTCGT
CGCTCTCTCTCCCCTCCTCGCGGACGCTCGCCTCGGTAAAGGGTAGGGTT
CGCTTTCGTAACCTATGAAGATGAGCGGGATGCCATGGACGCTTGTGCAG
AGCTGAATGGCAAGTCCATCCTCGCTCAGCGTGTGCGTGTCGAGATTTCT
CAGAACACCCGCGGGGGGGGAGGACGAGGGGGAGGTGGGGGCCGGGGGCG
AGATTATGGCGGGCGGGATTACGGAGATGCCTGAAGCCAAGGTGTACGTG
GGGAATCTTGACCCCGATGCCACGGACCGTGACCTCGACAAAGAGTTTGC
CCGGTATGGCAAGATTGCGCACATTTGGATTGCCCGCAAGCCACCTGTCC
GGCACGGAATGGCGGTGGGGGGCGGAGCCGCAGTCCAAGCCCGCGTGGTG
GAGGATATGGAGCGGGAGGAAGAGGTCGGAGCCCTAGCCCAGGTCGTCGC
TCTCTCTCCCCTCCTCGCGGACGCTCGCCTCGGTAAAGGGTAGGGTTCGC
TTTCGTAACCTATGAAGATGAGCGGGATGCCATGGACGCTTGTGCAGAGC
TGAATGGCAAGTCCATCCTCGCTCAGCGTGTGCGTGTCGAGATTTCTCAG
AACACCCGCGGGGGGGGAGGACGAGGGGGAGGTGGGGGCCGGGGGCGAGA
TTATGGCGGGCGGGATTACGGAGATGCCTGAAGCCAAGGTGTACGTGGGG
AATCTTGACCCCGATGCCACGGACCGTGACCTCGACAAAGAGTTTGCCCG
GTATGGCAAGATTGCGCACATTTGGATTGCCCGCAAGCCACCTGTCCGGC
ACGGAATGGCGGTGGGGGGCGGAGCCGCAGTCCAAGCCCGCGTGGTGGAG
GATATGGAGCGGGAGGAAGAGGTCGGAGCCCTAGCCCAGGTCGTCGCTCT
CTCTCCCCTCCTCGCGGACGCTCGCCTCGGTAAAGGGTAGGGTTCGCTTT
CGTAACCTATGAAGATGAGCGGGATGCCATGGACGCTTGTGCAGAGCTGA
ATGGCAAGTCCATCCTCGCTCAGCGTGTGCGTGTCGAGATTTCTCAGAAC
ACCCGCGGGGGGGGAGGACGAGGGGGAGGTGGGGGCCGGGGGCGAGATTA
TGGCGGGCGGGATTACGGAGATGCCTGAAGCCAAGGTGTACGTGGGGAAT
CTTGACCCCGATGCCACGGACCGTGACCTCGACAAAGAGTTTGCCCGGTA
TGGCAAGATTGCGCACATTTGGATTGCCCGCAAGCCACCTG
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Synonyms
Publications