jgi.p|Nanoce1779_2|535806, mRNA_1587 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|535806
Unique NamemRNA_1587
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1472
Alignment locationscaffold_1:1016567..1018038 -

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Properties
Property NameValue
TranscriptId535892
TrackFilteredModels2
ProteinId535806
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1016567..1018038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535806gene_1587Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|535806mRNA_1587-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1587CDS_1587Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1587 ID=mRNA_1587|Name=jgi.p|Nanoce1779_2|535806|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
ACAGGAAATATAGGTCCCCCGGTCGCTTTCCGTCGCCCCGCCACGGCCGC
CGTCGTCTCTGCCGCGGCTTTGTCCCTCTCCACCTCCCCTTGCTGGACGA
TATTTACAGCAAGGGCCATGGCCAGCGGTAGCACCAAGATCAGGGCTAGC
AGCAGTGTCAGCACTCACAGTGCCGATCGCCCCATGCCCCCTATCGAGAA
GGGGGCGCTCATCTTTCTTCATGGGAGCGGGGATGAAGGGGCCAACATGG
AGTACGTCTTACGGGCTACCGGCTTTACGCAGCGCATGAAAACCTTGGGA
CTGAGCGTGCATTGCCCTACTGCGCTGCCGCGCCCATACTCCTTTGCCGG
TGGTGCGGTCAGCACCGTGTGGTTTGATCGCACCAACCTCCACATTTCGG
CGCCCGAGGACAAGGCAGGCATGGACGCGTCCTTTGCGGTCTTGAGTGAT
CTGATGGAGAAGCTAGAGACGGAGCACGGCGTCCCATCGTCACACATCTA
CTTGGGGGGCTTCTCAATGGGTGGAGGCATGGCGTTGGCTGCCTTGACTC
GACAGATGAAGCCCCTGGCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCA
GCGGATTCCGATGTATATAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCC
CCGCCTTTTGCTGGCGCATGGACAGGCAGACATGGTGGTGCCGTATTCCT
GGGGTGAAGCGACGGCAAAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAA
AAAGAGGACGAGGGAGAGGAGATGGGGAGAGACGACCTAGTGGCCTTTTA
TAGATTTCCTCATTTGCAGCATGAGTTTGACCGGCGAGTGCTATCCGTCT
TGGCTCGATGGATCGAGAGCGGGGCGAAGATTTTCCCGGATGTATCGAAG
GAGCAAGCGGATGGTAGCGTGATTCGCGTGCCTTTGGGCCAAAATTCATC
ACTCACGACAGCAAGATCTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGG
GAACCGTGTCGACAAGCAAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAG
GTTCAAATGACGCTGGAAGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTT
CCCCTCCTCCTCCTCTTCCTCCACCCCCTCCTCCCCCCCTCCCTCCTCCT
TCTCCTCCCTCTCCTCCGGTAGAGTGCGTCGGCATCGTGCCACGTTCCGG
GTACCTAGAACCAAGGTCCAAGACTTTCTTACCCGTCCAGTAGCCGCACG
AGGAGCATACTTCTCATTCATGGCAGGGAAGGAACCAGATACTTTTTGTT
TGGTTTTCGAAAGCCCCTGCCCGGAGGAGACGGCAGCGGCGGTGTTGGAG
AAAGTGAGAACCCGGTTGCTTGATCCTCATGCACCGGACGGACTGAGTGC
GTGCACTCCTTCGTGAGTAAGATACAACTGAAACAGAAAGGATTTAGATG
CATAGAGAAGTTGATGCCATCG
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protein sequence of jgi.p|Nanoce1779_2|535806

>mRNA_1587-protein ID=mRNA_1587-protein|Name=jgi.p|Nanoce1779_2|535806|organism=Nannochloropsis oceanica|type=polypeptide|length=433bp
MASGSTKIRASSSVSTHSADRPMPPIEKGALIFLHGSGDEGANMEYVLRA
TGFTQRMKTLGLSVHCPTALPRPYSFAGGAVSTVWFDRTNLHISAPEDKA
GMDASFAVLSDLMEKLETEHGVPSSHIYLGGFSMGGGMALAALTRQMKPL
AGVFAIGSFLAADSDVYKQQQQQRWRLPRLLLAHGQADMVVPYSWGEATA
KKLYALSRAQKKEDEGEEMGRDDLVAFYRFPHLQHEFDRRVLSVLARWIE
SGAKIFPDVSKEQADGSVIRVPLGQNSSLTTARSPGGAQREAAAGTVSTS
KGTSGVCSPCEVQMTLEVEEEVAADSSFPSSSSSSTPSSPPPSSFSSLSS
GRVRRHRATFRVPRTKVQDFLTRPVAARGAYFSFMAGKEPDTFCLVFESP
CPEETAAAVLEKVRTRLLDPHAPDGLSACTPS*
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mRNA from alignment at scaffold_1:1016567..1018038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1587 ID=mRNA_1587|Name=jgi.p|Nanoce1779_2|535806|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp|location=Sequence derived from alignment at scaffold_1:1016567..1018038- (Nannochloropsis oceanica)
ACAGGAAATATAGGTCCCCCGGTCGCTTTCCGTCGCCCCGCCACGGCCGC
CGTCGTCTCTGCCGCGGCTTTGTCCCTCTCCACCTCCCCTTGCTGGACGA
TATTTACAGCAAGGGCCATGGCCAGCGGTAGCACCAAGATCAGGGCTAGC
AGCAGTGTCAGCACTCACAGTGCCGATCGCCCCATGCCCCCTATCGAGAA
GGGGGCGCTCATCTTTCTTCATGGGAGCGGGGATGAAGGGGCCAACATGG
AGTACGTCTTACGGGCTACCGGCTTTACGCAGCGCATGAAAACCTTGGGA
CTGAGCGTGCATTGCCCTACTGCGCTGCCGCGCCCATACTCCTTTGCCGG
TGGTGCGGTCAGCACCGTGTGGTTTGATCGCACCAACCTCCACATTTCGG
CGCCCGAGGACAAGGCAGGCATGGACGCGTCCTTTGCGGTCTTGAGTGAT
CTGATGGAGAAGCTAGAGACGGAGCACGGCGTCCCATCGTCACACATCTA
CTTGGGGGGCTTCTCAATGGGTGGAGGCATGGCGTTGGCTGCCTTGACTC
GACAGATGAAGCCCCTGGCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCA
GCGGATTCCGATGTATATAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCC
CCGCCTTTTGCTGGCGCATGGACAGGCAGACATGGTGGTGCCGTATTCCT
GGGGTGAAGCGACGGCAAAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAA
AAAGAGGACGAGGGAGAGGAGATGGGGAGAGACGACCTAGTGGCCTTTTA
TAGATTTCCTCATTTGCAGCATGAGTTTGACCGGCGAGTGCTATCCGTCT
TGGCTCGATGGATCGAGAGCGGGGCGAAGATTTTCCCGGATGTATCGAAG
GAGCAAGCGGATGGTAGCGTGATTCGCGTGCCTTTGGGCCAAAATTCATC
ACTCACGACAGCAAGATCTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGG
GAACCGTGTCGACAAGCAAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAG
GTTCAAATGACGCTGGAAGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTT
CCCCTCCTCCTCCTCTTCCTCCACCCCCTCCTCCCCCCCTCCCTCCTCCT
TCTCCTCCCTCTCCTCCGGTAGAGTGCGTCGGCATCGTGCCACGTTCCGG
GTACCTAGAACCAAGGTCCAAGACTTTCTTACCCGTCCAGTAGCCGCACG
AGGAGCATACTTCTCATTCATGGCAGGGAAGGAACCAGATACTTTTTGTT
TGGTTTTCGAAAGCCCCTGCCCGGAGGAGACGGCAGCGGCGGTGTTGGAG
AAAGTGAGAACCCGGTTGCTTGATCCTCATGCACCGGACGGACTGAGTGC
GTGCACTCCTTCGTGAGTAAGATACAACTGAAACAGAAAGGATTTAGATG
CATAGAGAAGTTGATGCCATCG
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Coding sequence (CDS) from alignment at scaffold_1:1016567..1018038-

>mRNA_1587 ID=mRNA_1587|Name=jgi.p|Nanoce1779_2|535806|organism=Nannochloropsis oceanica|type=CDS|length=1299bp|location=Sequence derived from alignment at scaffold_1:1016567..1018038- (Nannochloropsis oceanica)
ATGGCCAGCGGTAGCACCAAGATCAGGGCTAGCAGCAGTGTCAGCACTCA
CAGTGCCGATCGCCCCATGCCCCCTATCGAGAAGGGGGCGCTCATCTTTC
TTCATGGGAGCGGGGATGAAGGGGCCAACATGGAGTACGTCTTACGGGCT
ACCGGCTTTACGCAGCGCATGAAAACCTTGGGACTGAGCGTGCATTGCCC
TACTGCGCTGCCGCGCCCATACTCCTTTGCCGGTGGTGCGGTCAGCACCG
TGTGGTTTGATCGCACCAACCTCCACATTTCGGCGCCCGAGGACAAGGCA
GGCATGGACGCGTCCTTTGCGGTCTTGAGTGATCTGATGGAGAAGCTAGA
GACGGAGCACGGCGTCCCATCGTCACACATCTACTTGGGGGGCTTCTCAA
TGGGTGGAGGCATGGCGTTGGCTGCCTTGACTCGACAGATGAAGCCCCTG
GCAGGCGTCTTTGCGATTGGTAGTTTCTTGGCAGCGGATTCCGATGTATA
TAAGCAACAGCAGCAGCAGCGGTGGCGTTTGCCCCGCCTTTTGCTGGCGC
ATGGACAGGCAGACATGGTGGTGCCGTATTCCTGGGGTGAAGCGACGGCA
AAGAAGCTGTACGCGCTCAGTCGCGCGCAAAAAAAAGAGGACGAGGGAGA
GGAGATGGGGAGAGACGACCTAGTGGCCTTTTATAGATTTCCTCATTTGC
AGCATGAGTTTGACCGGCGAGTGCTATCCGTCTTGGCTCGATGGATCGAG
AGCGGGGCGAAGATTTTCCCGGATGTATCGAAGGAGCAAGCGGATGGTAG
CGTGATTCGCGTGCCTTTGGGCCAAAATTCATCACTCACGACAGCAAGAT
CTCCAGGAGGAGCACAAAGAGAAGCAGCAGCGGGAACCGTGTCGACAAGC
AAGGGTACAAGTGGCGTTTGCTCTCCGTGCGAGGTTCAAATGACGCTGGA
AGTGGAAGAAGAAGTGGCAGCAGACTCCTCTTTCCCCTCCTCCTCCTCTT
CCTCCACCCCCTCCTCCCCCCCTCCCTCCTCCTTCTCCTCCCTCTCCTCC
GGTAGAGTGCGTCGGCATCGTGCCACGTTCCGGGTACCTAGAACCAAGGT
CCAAGACTTTCTTACCCGTCCAGTAGCCGCACGAGGAGCATACTTCTCAT
TCATGGCAGGGAAGGAACCAGATACTTTTTGTTTGGTTTTCGAAAGCCCC
TGCCCGGAGGAGACGGCAGCGGCGGTGTTGGAGAAAGTGAGAACCCGGTT
GCTTGATCCTCATGCACCGGACGGACTGAGTGCGTGCACTCCTTCGTGA
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Synonyms
Publications