jgi.p|Nanoce1779_2|521731, mRNA_1585 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|521731
Unique Name	mRNA_1585
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1332
Alignment location	scaffold_1:1010384..1011997 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	521817
Track	FilteredModels2
ProteinId	521731

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1010384..1011997 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|521731	gene_1585	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|521731	mRNA_1585-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1585	CDS_1585	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1010384..1011997+
coding sequence from alignment at scaffold_1:1010384..1011997+

mRNA sequence

>mRNA_1585 ID=mRNA_1585|Name=jgi.p|Nanoce1779_2|521731|organism=Nannochloropsis oceanica|type=mRNA|length=1332bp
ATGCAACAGCAGGAGCGGGAGCAGGAGGAGGAACACGACGACAGCGCTGA
CGGAGAATGGCACGAAGTGGTGTTGCTGCCCCGGGAGATCTTGCGTGAGT
CCCCCAGCCAACGCCTGGGCGTGCCTGAGGCGGTGGAACGTCGCCACCGC
ATTTTTGGCTGTGAACTCATCCAGGAGGCCGGCATCCTTCTCCGACAACC
CCAAGTTGTCATGGCTACAGCTCAAACGCTTTTCCATCGCTTCTTCTACC
GCCCCCCCCGTGCGTTCCTTTTTGATGCCTTCACCGCCGCGATGGGCTGC
GTCTTCCTCGCCTCCAAACTCGAGGAGAAACCCCGGGCCCCCCGCGACGT
CATCTTCGTCTTCCATCACATGTGTCGGCGGCGTCGATCTCTCCCACCTT
CCTTGCTGGAAGTCACCTCTTCTCGGTACCATGACTTGCGCGAAGCCCTC
TTGACAATTGAAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTATAA
TGTGATGGACCACCCACATAAATTCATCCTCTATTACATCAAAACCTTGG
GGGGTTCCCCGGAGCTTGCTCAGAGGGCCTGGAATTATTTGAACGATAGT
TTGAGGCTTGATTGCTGCGTGCGCTACCGCGCGGAGCTGATTGCATGTGC
GGCTCTGTTTATGGCGGCGAGGGATTTGAGGATCAAGCTGCCTGATTCCC
CGCCTTGGTATGGTTTGTTCGGTGCAAGCTTGACGGAGATTAGGGAGGTG
GGGAATGCGATTCTGTCCTTGTACCATCAGCAGGACGAGGAAGGGGAGGA
GGGACCGTTGAGGTGGTTAGAGCCGTTACATCCCTTCAGTTTGAATGGGC
ATGACGCGAATGAGGACAAAGGAGACGAGGATGGGGAGGAGTCTGACACC
GAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGGCAGTCCCGCTCCCG
CTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCACTTCCCCTCCACCA
CTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTGCAGACGGAGAGAAG
AAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTTCGACGCCAGAGCCG
ATCGTCTAGCCCCCCCCCTGCTGTCAAGGCCAGGAGCAGGAGCCGCGGGA
GGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGGGGCGGAGTCGTACC
AGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGAGGGAGAGAGCGTGG
ACGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGAGGGAGGGAGGAAAA
GTGGGGGTGGGGGTGGGGGGGAGAGATTATGA

protein sequence of jgi.p|Nanoce1779_2|521731

>mRNA_1585-protein ID=mRNA_1585-protein|Name=jgi.p|Nanoce1779_2|521731|organism=Nannochloropsis oceanica|type=polypeptide|length=444bp
MQQQEREQEEEHDDSADGEWHEVVLLPREILRESPSQRLGVPEAVERRHR
IFGCELIQEAGILLRQPQVVMATAQTLFHRFFYRPPRAFLFDAFTAAMGC
VFLASKLEEKPRAPRDVIFVFHHMCRRRRSLPPSLLEVTSSRYHDLREAL
LTIEKYVLKELGFGFYNVMDHPHKFILYYIKTLGGSPELAQRAWNYLNDS
LRLDCCVRYRAELIACAALFMAARDLRIKLPDSPPWYGLFGASLTEIREV
GNAILSLYHQQDEEGEEGPLRWLEPLHPFSLNGHDANEDKGDEDGEESDT
EKKRLRKKRKKRQSRSRSSRSSSSSSSPHFPSTTATAGVAASDAAADGEK
KASKPSSFSRSFRRQSRSSSPPPAVKARSRSRGRERGREERRKHRGRSRT
RSRSKSRERGGGGRERGRERERERVRGREGGRKSGGGGGGERL*

mRNA from alignment at scaffold_1:1010384..1011997+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1585 ID=mRNA_1585|Name=jgi.p|Nanoce1779_2|521731|organism=Nannochloropsis oceanica|type=mRNA|length=1614bp|location=Sequence derived from alignment at scaffold_1:1010384..1011997+ (Nannochloropsis oceanica)
ATGCAACAGCAGGAGCGGGAGCAGGAGGAGGAACACGACGACAGCGCTGA
CGGAGAATGGCACGAAGTGGTGTTGCTGCCCCGGGAGATCTTGCGTGAGT
CCCCCAGCCAACGCCTGGGCGTGCCTGAGGCGGTGGAACGTCGCCACCGC
ATTTTTGGCTGTGAACTCATCCAGGAGGCCGGCATCCTTCTCCGACAACC
CCAAGTTGTCATGGCTACAGCTCAAACGCTTTTCCATCGCTTCTTCTACC
GCCGTGCATTCACCTCGGAAACAGCACAAACCCCCCCCGTCCTCACTCCT
GGCAAAGCCCCCCGTGCGTTCCTTTTTGATGCCTTCACCGCCGCGATGGG
CTGCGTCTTCCTCGCCTCCAAACTCGAGGAGAAACCCCGGGCCCCCCGCG
ACGTCATCTTCGTCTTCCATCACATGTGTCGGCGGCGTCGATCTCTCCCA
CCTTCCTTGCTGGAAGTCACCTCTTCTCGGTACCATGACTTGCGCGAAGC
CCTCTTGACAATTGAAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTT
ATAATGTGATGGACCACCCACATAAATTCATCCTCTATTACATCAAAACC
TTGGGGGGTTCCCCGGAGCTTGCTCAGAGGGCCTGGAATTATTTGAACGA
TAGTTTGAGGCTTGATTGCTGCGTGCGCTACCGCGCGGAGCTGATTGCAT
GTGCGGCTCTGTTTATGGCGGCGAGGGATTTGAGGATCAAGCTGCCTGAT
TCCCCGCCTTGGTATGGTTTGTTCGGTGCAAGCTTGACGGAGATTAGGGA
GGTGGGGAATGCGATTCTGTCCTTGTACCATCAGCAGGACGAGGAAGGGG
AGGAGGGACCGTTGAGGTGGTTAGAGCCGTTACATCCCTTCAGTTTGGTG
GGGATGGAGGCGTTGGGGAGGGTGGAGGGTGGAGGGGGGGACGGAGGGAG
GGGTACAGCGGGGGAGAATGCGAAGATGTTGGTCACGACGACAAGTGGTG
CACCGGGGAAAAAGAGGAGTGGGAGGGAGGGCGGGGGGGAGGAAGGAGGG
GAGGAGGAGGAGGATGCGGCAGTTACGGAGGAGGTGGAACCCACGAGGGG
GAAGAAGGAGAAGAGAGAAATGGAGAATGGGCATGACGCGAATGAGGACA
AAGGAGACGAGGATGGGGAGGAGTCTGACACCGAGAAGAAGAGGCTGAGG
AAGAAGAGAAAGAAGAGGCAGTCCCGCTCCCGCTCGTCACGCTCCTCTTC
CTCTTCCTCCTCTCCCCACTTCCCCTCCACCACTGCCACCGCTGGGGTTG
CTGCTAGTGATGCTGCTGCAGACGGAGAGAAGAAAGCAAGTAAACCCTCG
TCCTTCTCTCGGTCGTTTCGACGCCAGAGCCGATCGTCTAGCCCCCCCCC
TGCTGTCAAGGCCAGGAGCAGGAGCCGCGGGAGGGAGAGAGGGAGGGAGG
AGCGACGGAAACACAGGGGGCGGAGTCGTACCAGGAGCAGGAGTAAAAGT
CGAGAGCGAGGTGGTGGAGGGAGAGAGCGTGGACGGGAGAGGGAGAGGGA
GAGGGTTAGAGGAAGGGAGGGAGGGAGGAAAAGTGGGGGTGGGGGTGGGG
GGGAGAGATTATGA

Coding sequence (CDS) from alignment at scaffold_1:1010384..1011997+

>mRNA_1585 ID=mRNA_1585|Name=jgi.p|Nanoce1779_2|521731|organism=Nannochloropsis oceanica|type=CDS|length=3996bp|location=Sequence derived from alignment at scaffold_1:1010384..1011997+ (Nannochloropsis oceanica)
ATGCAACAGCAGGAGCGGGAGCAGGAGGAGGAACACGACGACAGCGCTGA
CGGAGAATGGCACGAAGTGGTGTTGCTGCCCCGGGAGATCTTGCGTGAGT
CCCCCAGCCAACGCCTGGGCGTGCCTGAGGCGGTGGAACGTCGCCACCGC
ATTTTTGGCTGTGAACTCATCCAGGAGGCCGGCATCCTTCTCCGACAACC
CCAAGTTGTCATGGCTACAGCTCAAACGCTTTTCCATCGCTTCTTCTACC
GCCCCCCCCGTGCGTTCCTTTTTGATGCCTTCACCGCCGCGATGGGCTGC
GTCTTCCTCGCCTCCAAACTCGAGGAGAAACCCCGGGCCCCCCGCGACGT
CATCTTCGTCTTCCATCACATGTGTCGGCGGCGTCGATCTCTCCCACCTT
CCTTGCTGGAAGTCACCTCTTCTCGGTACCATGACTTGCGCGAAGCCCTC
TTGACAATTGAAAAGTACGTCCTGAAAGAACTCGGCTTCGGGTTTTATAA
TGTGATGGACCACCCACATAAATTCATCCTCTATTACATCAAAACCTTGG
GGGGTTCCCCGGAGCTTGCTCAGAGGGCCTGGAATTATTTGAACGATAGT
TTGAGGCTTGATTGCTGCGTGCGCTACCGCGCGGAGCTGATTGCATGTGC
GGCTCTGTTTATGGCGGCGAGGGATTTGAGGATCAAGCTGCCTGATTCCC
CGCCTTGGTATGGTTTGTTCGGTGCAAGCTTGACGGAGATTAGGGAGGTG
GGGAATGCGATTCTGTCCTTGTACCATCAGCAGGACGAGGAAGGGGAGGA
GGGACCGTTGAGGTGGTTAGAGCCGTTACATCCCTTCAGTTTGAATGGGC
ATGACGCGAATGAGGACAAAGGAGACGAGGATGGGGAGGAGTCTGACACC
GAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGGCAGTCCCGCTCCCG
CTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCACTTCCCCTCCACCA
CTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTGCAGACGGAGAGAAG
AAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTTCGACGCCAGAGCCG
ATCGTCTAGCCCCCCCCCTGCTGTCAAGGCCAGGAGCAGGAGCCGCGGGA
GGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGGGGCGGAGTCGTACC
AGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGAGGGAGAGAGCGTGG
ACGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGAGGGAGGGAGGAAAA
GTGGGGGTGGGGGTGGGGGGGAGAGATTATGAATGCAACAGCAGGAGCGG
GAGCAGGAGGAGGAACACGACGACAGCGCTGACGGAGAATGGCACGAAGT
GGTGTTGCTGCCCCGGGAGATCTTGCGTGAGTCCCCCAGCCAACGCCTGG
GCGTGCCTGAGGCGGTGGAACGTCGCCACCGCATTTTTGGCTGTGAACTC
ATCCAGGAGGCCGGCATCCTTCTCCGACAACCCCAAGTTGTCATGGCTAC
AGCTCAAACGCTTTTCCATCGCTTCTTCTACCGCCCCCCCCGTGCGTTCC
TTTTTGATGCCTTCACCGCCGCGATGGGCTGCGTCTTCCTCGCCTCCAAA
CTCGAGGAGAAACCCCGGGCCCCCCGCGACGTCATCTTCGTCTTCCATCA
CATGTGTCGGCGGCGTCGATCTCTCCCACCTTCCTTGCTGGAAGTCACCT
CTTCTCGGTACCATGACTTGCGCGAAGCCCTCTTGACAATTGAAAAGTAC
GTCCTGAAAGAACTCGGCTTCGGGTTTTATAATGTGATGGACCACCCACA
TAAATTCATCCTCTATTACATCAAAACCTTGGGGGGTTCCCCGGAGCTTG
CTCAGAGGGCCTGGAATTATTTGAACGATAGTTTGAGGCTTGATTGCTGC
GTGCGCTACCGCGCGGAGCTGATTGCATGTGCGGCTCTGTTTATGGCGGC
GAGGGATTTGAGGATCAAGCTGCCTGATTCCCCGCCTTGGTATGGTTTGT
TCGGTGCAAGCTTGACGGAGATTAGGGAGGTGGGGAATGCGATTCTGTCC
TTGTACCATCAGCAGGACGAGGAAGGGGAGGAGGGACCGTTGAGGTGGTT
AGAGCCGTTACATCCCTTCAGTTTGAATGGGCATGACGCGAATGAGGACA
AAGGAGACGAGGATGGGGAGGAGTCTGACACCGAGAAGAAGAGGCTGAGG
AAGAAGAGAAAGAAGAGGCAGTCCCGCTCCCGCTCGTCACGCTCCTCTTC
CTCTTCCTCCTCTCCCCACTTCCCCTCCACCACTGCCACCGCTGGGGTTG
CTGCTAGTGATGCTGCTGCAGACGGAGAGAAGAAAGCAAGTAAACCCTCG
TCCTTCTCTCGGTCGTTTCGACGCCAGAGCCGATCGTCTAGCCCCCCCCC
TGCTGTCAAGGCCAGGAGCAGGAGCCGCGGGAGGGAGAGAGGGAGGGAGG
AGCGACGGAAACACAGGGGGCGGAGTCGTACCAGGAGCAGGAGTAAAAGT
CGAGAGCGAGGTGGTGGAGGGAGAGAGCGTGGACGGGAGAGGGAGAGGGA
GAGGGTTAGAGGAAGGGAGGGAGGGAGGAAAAGTGGGGGTGGGGGTGGGG
GGGAGAGATTATGAATGCAACAGCAGGAGCGGGAGCAGGAGGAGGAACAC
GACGACAGCGCTGACGGAGAATGGCACGAAGTGGTGTTGCTGCCCCGGGA
GATCTTGCGTGAGTCCCCCAGCCAACGCCTGGGCGTGCCTGAGGCGGTGG
AACGTCGCCACCGCATTTTTGGCTGTGAACTCATCCAGGAGGCCGGCATC
CTTCTCCGACAACCCCAAGTTGTCATGGCTACAGCTCAAACGCTTTTCCA
TCGCTTCTTCTACCGCCCCCCCCGTGCGTTCCTTTTTGATGCCTTCACCG
CCGCGATGGGCTGCGTCTTCCTCGCCTCCAAACTCGAGGAGAAACCCCGG
GCCCCCCGCGACGTCATCTTCGTCTTCCATCACATGTGTCGGCGGCGTCG
ATCTCTCCCACCTTCCTTGCTGGAAGTCACCTCTTCTCGGTACCATGACT
TGCGCGAAGCCCTCTTGACAATTGAAAAGTACGTCCTGAAAGAACTCGGC
TTCGGGTTTTATAATGTGATGGACCACCCACATAAATTCATCCTCTATTA
CATCAAAACCTTGGGGGGTTCCCCGGAGCTTGCTCAGAGGGCCTGGAATT
ATTTGAACGATAGTTTGAGGCTTGATTGCTGCGTGCGCTACCGCGCGGAG
CTGATTGCATGTGCGGCTCTGTTTATGGCGGCGAGGGATTTGAGGATCAA
GCTGCCTGATTCCCCGCCTTGGTATGGTTTGTTCGGTGCAAGCTTGACGG
AGATTAGGGAGGTGGGGAATGCGATTCTGTCCTTGTACCATCAGCAGGAC
GAGGAAGGGGAGGAGGGACCGTTGAGGTGGTTAGAGCCGTTACATCCCTT
CAGTTTGAATGGGCATGACGCGAATGAGGACAAAGGAGACGAGGATGGGG
AGGAGTCTGACACCGAGAAGAAGAGGCTGAGGAAGAAGAGAAAGAAGAGG
CAGTCCCGCTCCCGCTCGTCACGCTCCTCTTCCTCTTCCTCCTCTCCCCA
CTTCCCCTCCACCACTGCCACCGCTGGGGTTGCTGCTAGTGATGCTGCTG
CAGACGGAGAGAAGAAAGCAAGTAAACCCTCGTCCTTCTCTCGGTCGTTT
CGACGCCAGAGCCGATCGTCTAGCCCCCCCCCTGCTGTCAAGGCCAGGAG
CAGGAGCCGCGGGAGGGAGAGAGGGAGGGAGGAGCGACGGAAACACAGGG
GGCGGAGTCGTACCAGGAGCAGGAGTAAAAGTCGAGAGCGAGGTGGTGGA
GGGAGAGAGCGTGGACGGGAGAGGGAGAGGGAGAGGGTTAGAGGAAGGGA
GGGAGGGAGGAAAAGTGGGGGTGGGGGTGGGGGGGAGAGATTATGA

Synonyms

Publications