jgi.p|Nanoce1779_2|572783, mRNA_1583 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572783
Unique Name	mRNA_1583
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1025
Alignment location	scaffold_1:1002728..1003752 -

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Properties


Property Name	Value
TranscriptId	572869
Track	FilteredModels2
ProteinId	572783

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:1002728..1003752 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572783	gene_1583	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572783	mRNA_1583-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1583	CDS_1583	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:1002728..1003752-
coding sequence from alignment at scaffold_1:1002728..1003752-

mRNA sequence

>mRNA_1583 ID=mRNA_1583|Name=jgi.p|Nanoce1779_2|572783|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp
GGGGATGGAGGGTTGAAGGACGAGAAAGCAGCAGCATTGATTGTGGAGAC
GGTATTGCGAGTCCTCACACAGGTGTTGATTCAAGCAAAAACTAAGCTGC
CGAGACAACAGCAGTTCAAAACTGATTTGTTTATTATGTTGCAGGGGGCA
ATGCGGAAGGAGGACGCAGAGGTAGTGGAGAGTTGTTTGTGGTCTCTATG
GTTGGCGCATCCGGAGGAAAACGTGCGGAGGTTGATGGACGATGGGGTAC
AATTCATGTTGCGGGCAAAATATGACTTGGCTGTTGCTCGATTCGACGCT
GCATTAGCGGCGGATGGGGAGTTTATTGAGGCAAGTAATAAGCGGGGTAC
GGCCCATTTTTTGGCGGGGAGGTATGAGGAGGCCCGAAGGGATGTGGAGG
CGACTTTGAGTCGGGAGCCGTTACACTGGGGGGCGTTGTTGGGGAAGGGC
CTGATTTATTATGAACAGGGCCAGAAGGTCCAGGCGATTAAGGCATTCAG
GGCTACCCTGAGGATTCACCCCTGGAGCACAAACGTGGGGACGACATTGT
TCCATACCCGGAAGCAGTTGGAGGGGGAGGATGCGGGAACGATGGCGGAG
CATCCTTGAGGAAGGGGAAAGAGAGGAGGGGGAAAGGGTAGGGCGATCAT
GCTATGTTGGTCGACCTTGTCTCATGAGCGGAGGCAACTTACAGAGGAAG
AGGTGGAGACGACAGTGGAATAACAGGATAGGACAGGAAGGGAGGGGAGG
GATGTACCTTTCGTAAGACATTCGTGAAGGACAGAAAGGAATCGGGAGGA
GGAGCCGTCTACTATTCTTAAAAAGAGTTCTCTGGGAGGGAAAAGACCTA
AGCTTGTCCCCACCGATTGCATCCACGACTGGACGGTCTGACCCTGTGCG
AAGGGGTGCATACCAGGTGGTGCATTTCAGCAACCACAACTGTGTATTTA
GATGGTGATGTAGATTTAGATGAGCGGAGGATAGTGCAAGTATGCACTGT
AAAATAAACACAAAGTTAAGGCGAT

protein sequence of jgi.p|Nanoce1779_2|572783

>mRNA_1583-protein ID=mRNA_1583-protein|Name=jgi.p|Nanoce1779_2|572783|organism=Nannochloropsis oceanica|type=polypeptide|length=158bp
MLQGAMRKEDAEVVESCLWSLWLAHPEENVRRLMDDGVQFMLRAKYDLAV
ARFDAALAADGEFIEASNKRGTAHFLAGRYEEARRDVEATLSREPLHWGA
LLGKGLIYYEQGQKVQAIKAFRATLRIHPWSTNVGTTLFHTRKQLEGEDA
GTMAEHP*

mRNA from alignment at scaffold_1:1002728..1003752-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1583 ID=mRNA_1583|Name=jgi.p|Nanoce1779_2|572783|organism=Nannochloropsis oceanica|type=mRNA|length=1025bp|location=Sequence derived from alignment at scaffold_1:1002728..1003752- (Nannochloropsis oceanica)
GGGGATGGAGGGTTGAAGGACGAGAAAGCAGCAGCATTGATTGTGGAGAC
GGTATTGCGAGTCCTCACACAGGTGTTGATTCAAGCAAAAACTAAGCTGC
CGAGACAACAGCAGTTCAAAACTGATTTGTTTATTATGTTGCAGGGGGCA
ATGCGGAAGGAGGACGCAGAGGTAGTGGAGAGTTGTTTGTGGTCTCTATG
GTTGGCGCATCCGGAGGAAAACGTGCGGAGGTTGATGGACGATGGGGTAC
AATTCATGTTGCGGGCAAAATATGACTTGGCTGTTGCTCGATTCGACGCT
GCATTAGCGGCGGATGGGGAGTTTATTGAGGCAAGTAATAAGCGGGGTAC
GGCCCATTTTTTGGCGGGGAGGTATGAGGAGGCCCGAAGGGATGTGGAGG
CGACTTTGAGTCGGGAGCCGTTACACTGGGGGGCGTTGTTGGGGAAGGGC
CTGATTTATTATGAACAGGGCCAGAAGGTCCAGGCGATTAAGGCATTCAG
GGCTACCCTGAGGATTCACCCCTGGAGCACAAACGTGGGGACGACATTGT
TCCATACCCGGAAGCAGTTGGAGGGGGAGGATGCGGGAACGATGGCGGAG
CATCCTTGAGGAAGGGGAAAGAGAGGAGGGGGAAAGGGTAGGGCGATCAT
GCTATGTTGGTCGACCTTGTCTCATGAGCGGAGGCAACTTACAGAGGAAG
AGGTGGAGACGACAGTGGAATAACAGGATAGGACAGGAAGGGAGGGGAGG
GATGTACCTTTCGTAAGACATTCGTGAAGGACAGAAAGGAATCGGGAGGA
GGAGCCGTCTACTATTCTTAAAAAGAGTTCTCTGGGAGGGAAAAGACCTA
AGCTTGTCCCCACCGATTGCATCCACGACTGGACGGTCTGACCCTGTGCG
AAGGGGTGCATACCAGGTGGTGCATTTCAGCAACCACAACTGTGTATTTA
GATGGTGATGTAGATTTAGATGAGCGGAGGATAGTGCAAGTATGCACTGT
AAAATAAACACAAAGTTAAGGCGAT

Coding sequence (CDS) from alignment at scaffold_1:1002728..1003752-

>mRNA_1583 ID=mRNA_1583|Name=jgi.p|Nanoce1779_2|572783|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_1:1002728..1003752- (Nannochloropsis oceanica)
ATGTTGCAGGGGGCAATGCGGAAGGAGGACGCAGAGGTAGTGGAGAGTTG
TTTGTGGTCTCTATGGTTGGCGCATCCGGAGGAAAACGTGCGGAGGTTGA
TGGACGATGGGGTACAATTCATGTTGCGGGCAAAATATGACTTGGCTGTT
GCTCGATTCGACGCTGCATTAGCGGCGGATGGGGAGTTTATTGAGGCAAG
TAATAAGCGGGGTACGGCCCATTTTTTGGCGGGGAGGTATGAGGAGGCCC
GAAGGGATGTGGAGGCGACTTTGAGTCGGGAGCCGTTACACTGGGGGGCG
TTGTTGGGGAAGGGCCTGATTTATTATGAACAGGGCCAGAAGGTCCAGGC
GATTAAGGCATTCAGGGCTACCCTGAGGATTCACCCCTGGAGCACAAACG
TGGGGACGACATTGTTCCATACCCGGAAGCAGTTGGAGGGGGAGGATGCG
GGAACGATGGCGGAGCATCCTTGA

Synonyms

Publications