jgi.p|Nanoce1779_2|521930, mRNA_1582 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|521930
Unique NamemRNA_1582
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length615
Alignment locationscaffold_1:1001618..1002383 +

Link to JBrowse

Properties
Property NameValue
TranscriptId522016
TrackFilteredModels2
ProteinId521930
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_1supercontigscaffold_1:1001618..1002383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521930gene_1582Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|521930mRNA_1582-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_1582CDS_1582Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_1582 ID=mRNA_1582|Name=jgi.p|Nanoce1779_2|521930|organism=Nannochloropsis oceanica|type=mRNA|length=615bp
ATGTGCGAAAACGAGGGCCAGGACACGGAAGCCAGCGAAAGAAAAGAATT
TATTCTAAAACATCCGGAGAACGTTCATCTTAACCAATACTGGTATTCTG
CTCGTACTATTGCCAGCTTGGCCTCCGAGGTTGAAGAGCAAGCCTCAGCC
ACTGGTGGGGAAATCGCATTTCTCAGCACGCCCAGCCTCTACTTTAGTAT
TTCCCCCACCACGCGTCAGCGCGCTCGACTGTTTGATTTCGACGTGCAGT
GGGCATGGGACCCTGGCTTTGTGTTATACAACTACAAGCATCTGGAAGCG
CTCCCTGTGGAGCTCAAGCATCGGTTTACGATGGTGGTCATCGATCCTCC
GTTTATCACGGAAGAGGTTTGGAAGATGTACGCCAAGGCTGCAAAATATT
TGCTACTAAAGAGTAGCGGCAATGAGGGCGAGAAGACCAGAAAAAGGAAT
ATTCTGTGCACCACAGTCAGTGAGAATGCAGGGCTACTACAGGCCTTACT
GGGAGTGAAGGAGAGGCGTTTTAAACCGTCCATCCCCACATTAGTCTACC
AATTCTCTTCGTTTAGCAACTACGAATCGGCAAGATTGGATGCGATCAAT
CCTGAACTGATGTGA
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protein sequence of jgi.p|Nanoce1779_2|521930

>mRNA_1582-protein ID=mRNA_1582-protein|Name=jgi.p|Nanoce1779_2|521930|organism=Nannochloropsis oceanica|type=polypeptide|length=205bp
MCENEGQDTEASERKEFILKHPENVHLNQYWYSARTIASLASEVEEQASA
TGGEIAFLSTPSLYFSISPTTRQRARLFDFDVQWAWDPGFVLYNYKHLEA
LPVELKHRFTMVVIDPPFITEEVWKMYAKAAKYLLLKSSGNEGEKTRKRN
ILCTTVSENAGLLQALLGVKERRFKPSIPTLVYQFSSFSNYESARLDAIN
PELM*
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mRNA from alignment at scaffold_1:1001618..1002383+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_1582 ID=mRNA_1582|Name=jgi.p|Nanoce1779_2|521930|organism=Nannochloropsis oceanica|type=mRNA|length=766bp|location=Sequence derived from alignment at scaffold_1:1001618..1002383+ (Nannochloropsis oceanica)
ATGTGCGAAAACGAGGGCCAGGACACGGAAGCCAGCGAAAGAAAAGAATT
TATTCTAAAACATCCGGAGGTAAGGATACAGATTTGCTTCGCCTGCGAGC
AGCCCCAAACTCGTCTGGCTTGCCCTCCGAGCACGCATCCAAACCCTGTT
ATCCTCTGCTTGTGTTTGCGTTAACCCCTCTCACTTCCCCATTGTTTCTC
TCACCTAAATCTCGAAACAGAACGTTCATCTTAACCAATACTGGTATTCT
GCTCGTACTATTGCCAGCTTGGCCTCCGAGGTTGAAGAGCAAGCCTCAGC
CACTGGTGGGGAAATCGCATTTCTCAGCACGCCCAGCCTCTACTTTAGTA
TTTCCCCCACCACGCGTCAGCGCGCTCGACTGTTTGATTTCGACGTGCAG
TGGGCATGGGACCCTGGCTTTGTGTTATACAACTACAAGCATCTGGAAGC
GCTCCCTGTGGAGCTCAAGCATCGGTTTACGATGGTGGTCATCGATCCTC
CGTTTATCACGGAAGAGGTTTGGAAGATGTACGCCAAGGCTGCAAAATAT
TTGCTACTAAAGAGTAGCGGCAATGAGGGCGAGAAGACCAGAAAAAGGAA
TATTCTGTGCACCACAGTCAGTGAGAATGCAGGGCTACTACAGGCCTTAC
TGGGAGTGAAGGAGAGGCGTTTTAAACCGTCCATCCCCACATTAGTCTAC
CAATTCTCTTCGTTTAGCAACTACGAATCGGCAAGATTGGATGCGATCAA
TCCTGAACTGATGTGA
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Coding sequence (CDS) from alignment at scaffold_1:1001618..1002383+

>mRNA_1582 ID=mRNA_1582|Name=jgi.p|Nanoce1779_2|521930|organism=Nannochloropsis oceanica|type=CDS|length=1230bp|location=Sequence derived from alignment at scaffold_1:1001618..1002383+ (Nannochloropsis oceanica)
ATGTGCGAAAACGAGGGCCAGGACACGGAAGCCAGCGAAAGAAAAGAATT
TATTCTAAAACATCCGGAGAACGTTCATCTTAACCAATACTGGTATTCTG
CTCGTACTATTGCCAGCTTGGCCTCCGAGGTTGAAGAGCAAGCCTCAGCC
ACTGGTGGGGAAATCGCATTTCTCAGCACGCCCAGCCTCTACTTTAGTAT
TTCCCCCACCACGCGTCAGCGCGCTCGACTGTTTGATTTCGACGTGCAGT
GGGCATGGGACCCTGGCTTTGTGTTATACAACTACAAGCATCTGGAAGCG
CTCCCTGTGGAGCTCAAGCATCGGTTTACGATGGTGGTCATCGATCCTCC
GTTTATCACGGAAGAGGTTTGGAAGATGTACGCCAAGGCTGCAAAATATT
TGCTACTAAAGAGTAGCGGCAATGAGGGCGAGAAGACCAGAAAAAGGAAT
ATTCTGTGCACCACAGTCAGTGAGAATGCAGGGCTACTACAGGCCTTACT
GGGAGTGAAGGAGAGGCGTTTTAAACCGTCCATCCCCACATTAGTCTACC
AATTCTCTTCGTTTAGCAACTACGAATCGGCAAGATTGGATGCGATCAAT
CCTGAACTGATGTGAATGTGCGAAAACGAGGGCCAGGACACGGAAGCCAG
CGAAAGAAAAGAATTTATTCTAAAACATCCGGAGAACGTTCATCTTAACC
AATACTGGTATTCTGCTCGTACTATTGCCAGCTTGGCCTCCGAGGTTGAA
GAGCAAGCCTCAGCCACTGGTGGGGAAATCGCATTTCTCAGCACGCCCAG
CCTCTACTTTAGTATTTCCCCCACCACGCGTCAGCGCGCTCGACTGTTTG
ATTTCGACGTGCAGTGGGCATGGGACCCTGGCTTTGTGTTATACAACTAC
AAGCATCTGGAAGCGCTCCCTGTGGAGCTCAAGCATCGGTTTACGATGGT
GGTCATCGATCCTCCGTTTATCACGGAAGAGGTTTGGAAGATGTACGCCA
AGGCTGCAAAATATTTGCTACTAAAGAGTAGCGGCAATGAGGGCGAGAAG
ACCAGAAAAAGGAATATTCTGTGCACCACAGTCAGTGAGAATGCAGGGCT
ACTACAGGCCTTACTGGGAGTGAAGGAGAGGCGTTTTAAACCGTCCATCC
CCACATTAGTCTACCAATTCTCTTCGTTTAGCAACTACGAATCGGCAAGA
TTGGATGCGATCAATCCTGAACTGATGTGA
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Synonyms
Publications