jgi.p|Nanoce1779_2|572780, mRNA_1581 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572780
Unique Name	mRNA_1581
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1861
Alignment location	scaffold_1:999282..1001142 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572866
Track	FilteredModels2
ProteinId	572780

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:999282..1001142 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572780	gene_1581	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572780	mRNA_1581-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1581	CDS_1581	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:999282..1001142+
coding sequence from alignment at scaffold_1:999282..1001142+

mRNA sequence

>mRNA_1581 ID=mRNA_1581|Name=jgi.p|Nanoce1779_2|572780|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp
CAGGACACCAGAAAGTCAAGCATGGCATCGATTAAGACGAAAGGGCTGGG
CAGCGGCGCCCCTACAGGTGGAGGATATCAGGGAGAAGGCGACGTCATGC
TGCCAGCAATCGATCTAGGAATGGCAGTAACGATCGCTCGGGCAGTGTAC
GACGTGTGCGACGACGTGTTGGATAAGCTGTACGAAGTGACGGAGAAGGA
TTGCCAGGCTGCGTTGGACAAGACCTTGAAAAAAAGTGCTGCGCTGATCA
AGAATTTGTCGGATAAATTGGTAGAACATCAAGACCAAGCCTGTGAGAGT
TACGTAAAACTCCAAGCGCAACAGTATGCAATAAAGCGGATCCCAGAGGG
TGCGAATCGGTTGCCTGATGGAGAGTGGTGGTCCATTGAGGACGAAACGG
ATGAGTATGGGGAAGGATACCGGGATTTGGAGAGCGGGGAAGGAGGGGTG
GTGCTCTCGAAGGTGACGATGGCGCAAGACGAAGCCTACGCAAAAAAGTT
CCGTGACCACCATTCGGGAATGGTGGGGCTTTTGAATGACATTGAGGCAG
CTTGCTTGGACTTAACGGAGGAGGAGATGGAAGAACTGGCGGACGTGGGG
TTGTTCTGCGCGAGGATTGCAGCTGAATACGCTCAGGGGTTCGCCCGCCG
GTCGTTGGCGATACTGGAGAAGGATTATGATTGGGAGACGGCTGAGGAGA
AGAGACGAGAAAGGGAGGAGCATGTAACAGTGGAAGAGGCTACGGAGGAG
GAGATCGCAGAGCTATATCGGAGCCGAATGGAGGAGCCACTGCCGCCTTT
CAAGACCAACACCGTGAAAAGCGGCAGCAAGAGGAGCAAAACCACTACCA
CCTCCACACACGTCAAAGAGACAAAGAATTCCTTTTTCGACGATCTCTGC
GATCCTTACGCCCTCGCCCCTCCACCCTCCTCAGGTCGCTGTCGCCGTGG
TCGTGGCGCACCTTCTCGCCTCCTCTGGCAACCGGTGGGGCCCTCCCTCC
TCCAAGCCCTCCTTTCGACCCCTCAGCAGTTCCAGTCACACCCGTTTAAA
ACGACGGGGTTGTATGCCGCTCTCTTGCCAGTGAGTGGAATTATAGTGTT
CTGTCTGCCTGGTGTATTAATCACAGATGCTGTGCTGCAAGCTATGTACA
AGAAGGTCGGACATGGGGTAGAGGTGTGGATACACGATGGCAAGGAAATT
TGTCGGTTGAGCTGGATGGTTTCACGTTTATCCTTGCGGCAGACGTATCG
CCTTGCGAATAAGCAGTTGAGGAAGACGGGCGCAGATCCGATGGCTGCTT
TGAATTGGATAGGGGAAATGGCATGTGAAGCCGTGGTGCACCCGCTTGTA
ACTGCTGGGGTAGTCTGGGAGAGGGCCAAGCGGGCGGTGGTGACGGCGGG
GAAGATTGTAGAGTGGGCGCAGAAGCAGGTGATGGAGAAGTAGATGGTGT
TAAGGACATGGGGGGAATCGAAGAAAGAGGAAGGAGGAGGAGATAGAGAA
CTGGGAGTTGAAATTTGGTTGTTTAAAAGGAGTGGGCCGGAGATGAGAGG
GGGAGGGAGAGGAGGAGCGGTAGAAGCGGCGTTCTGTAGCAGAGACTGCA
TGTAGACTAGACTTGACGGTGCATATTCAATGGGGTTTCAATGACTTTGC
GAAGAAGAAAGGGAAGTGAAGGAAAGTCCGTGTGAGAGGGAGAATTGAGA
GACATAAATGATGAGAGAAAGATGACACTGCTTGGAGGAGTGAAATAAAG
CCATGTTGACAAACGGGCACATACATATTAGGTATCATCTGAAGTCCTGC
ATTTGCAAAAACTTCGCCTGCCACTATGTGTGTATCTAAGTACGTGTTAT
CGTCGTGTATC

protein sequence of jgi.p|Nanoce1779_2|572780

>mRNA_1581-protein ID=mRNA_1581-protein|Name=jgi.p|Nanoce1779_2|572780|organism=Nannochloropsis oceanica|type=polypeptide|length=474bp
MASIKTKGLGSGAPTGGGYQGEGDVMLPAIDLGMAVTIARAVYDVCDDVL
DKLYEVTEKDCQAALDKTLKKSAALIKNLSDKLVEHQDQACESYVKLQAQ
QYAIKRIPEGANRLPDGEWWSIEDETDEYGEGYRDLESGEGGVVLSKVTM
AQDEAYAKKFRDHHSGMVGLLNDIEAACLDLTEEEMEELADVGLFCARIA
AEYAQGFARRSLAILEKDYDWETAEEKRREREEHVTVEEATEEEIAELYR
SRMEEPLPPFKTNTVKSGSKRSKTTTTSTHVKETKNSFFDDLCDPYALAP
PPSSGRCRRGRGAPSRLLWQPVGPSLLQALLSTPQQFQSHPFKTTGLYAA
LLPVSGIIVFCLPGVLITDAVLQAMYKKVGHGVEVWIHDGKEICRLSWMV
SRLSLRQTYRLANKQLRKTGADPMAALNWIGEMACEAVVHPLVTAGVVWE
RAKRAVVTAGKIVEWAQKQVMEK*

mRNA from alignment at scaffold_1:999282..1001142+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1581 ID=mRNA_1581|Name=jgi.p|Nanoce1779_2|572780|organism=Nannochloropsis oceanica|type=mRNA|length=1861bp|location=Sequence derived from alignment at scaffold_1:999282..1001142+ (Nannochloropsis oceanica)
CAGGACACCAGAAAGTCAAGCATGGCATCGATTAAGACGAAAGGGCTGGG
CAGCGGCGCCCCTACAGGTGGAGGATATCAGGGAGAAGGCGACGTCATGC
TGCCAGCAATCGATCTAGGAATGGCAGTAACGATCGCTCGGGCAGTGTAC
GACGTGTGCGACGACGTGTTGGATAAGCTGTACGAAGTGACGGAGAAGGA
TTGCCAGGCTGCGTTGGACAAGACCTTGAAAAAAAGTGCTGCGCTGATCA
AGAATTTGTCGGATAAATTGGTAGAACATCAAGACCAAGCCTGTGAGAGT
TACGTAAAACTCCAAGCGCAACAGTATGCAATAAAGCGGATCCCAGAGGG
TGCGAATCGGTTGCCTGATGGAGAGTGGTGGTCCATTGAGGACGAAACGG
ATGAGTATGGGGAAGGATACCGGGATTTGGAGAGCGGGGAAGGAGGGGTG
GTGCTCTCGAAGGTGACGATGGCGCAAGACGAAGCCTACGCAAAAAAGTT
CCGTGACCACCATTCGGGAATGGTGGGGCTTTTGAATGACATTGAGGCAG
CTTGCTTGGACTTAACGGAGGAGGAGATGGAAGAACTGGCGGACGTGGGG
TTGTTCTGCGCGAGGATTGCAGCTGAATACGCTCAGGGGTTCGCCCGCCG
GTCGTTGGCGATACTGGAGAAGGATTATGATTGGGAGACGGCTGAGGAGA
AGAGACGAGAAAGGGAGGAGCATGTAACAGTGGAAGAGGCTACGGAGGAG
GAGATCGCAGAGCTATATCGGAGCCGAATGGAGGAGCCACTGCCGCCTTT
CAAGACCAACACCGTGAAAAGCGGCAGCAAGAGGAGCAAAACCACTACCA
CCTCCACACACGTCAAAGAGACAAAGAATTCCTTTTTCGACGATCTCTGC
GATCCTTACGCCCTCGCCCCTCCACCCTCCTCAGGTCGCTGTCGCCGTGG
TCGTGGCGCACCTTCTCGCCTCCTCTGGCAACCGGTGGGGCCCTCCCTCC
TCCAAGCCCTCCTTTCGACCCCTCAGCAGTTCCAGTCACACCCGTTTAAA
ACGACGGGGTTGTATGCCGCTCTCTTGCCAGTGAGTGGAATTATAGTGTT
CTGTCTGCCTGGTGTATTAATCACAGATGCTGTGCTGCAAGCTATGTACA
AGAAGGTCGGACATGGGGTAGAGGTGTGGATACACGATGGCAAGGAAATT
TGTCGGTTGAGCTGGATGGTTTCACGTTTATCCTTGCGGCAGACGTATCG
CCTTGCGAATAAGCAGTTGAGGAAGACGGGCGCAGATCCGATGGCTGCTT
TGAATTGGATAGGGGAAATGGCATGTGAAGCCGTGGTGCACCCGCTTGTA
ACTGCTGGGGTAGTCTGGGAGAGGGCCAAGCGGGCGGTGGTGACGGCGGG
GAAGATTGTAGAGTGGGCGCAGAAGCAGGTGATGGAGAAGTAGATGGTGT
TAAGGACATGGGGGGAATCGAAGAAAGAGGAAGGAGGAGGAGATAGAGAA
CTGGGAGTTGAAATTTGGTTGTTTAAAAGGAGTGGGCCGGAGATGAGAGG
GGGAGGGAGAGGAGGAGCGGTAGAAGCGGCGTTCTGTAGCAGAGACTGCA
TGTAGACTAGACTTGACGGTGCATATTCAATGGGGTTTCAATGACTTTGC
GAAGAAGAAAGGGAAGTGAAGGAAAGTCCGTGTGAGAGGGAGAATTGAGA
GACATAAATGATGAGAGAAAGATGACACTGCTTGGAGGAGTGAAATAAAG
CCATGTTGACAAACGGGCACATACATATTAGGTATCATCTGAAGTCCTGC
ATTTGCAAAAACTTCGCCTGCCACTATGTGTGTATCTAAGTACGTGTTAT
CGTCGTGTATC

Coding sequence (CDS) from alignment at scaffold_1:999282..1001142+

>mRNA_1581 ID=mRNA_1581|Name=jgi.p|Nanoce1779_2|572780|organism=Nannochloropsis oceanica|type=CDS|length=1422bp|location=Sequence derived from alignment at scaffold_1:999282..1001142+ (Nannochloropsis oceanica)
ATGGCATCGATTAAGACGAAAGGGCTGGGCAGCGGCGCCCCTACAGGTGG
AGGATATCAGGGAGAAGGCGACGTCATGCTGCCAGCAATCGATCTAGGAA
TGGCAGTAACGATCGCTCGGGCAGTGTACGACGTGTGCGACGACGTGTTG
GATAAGCTGTACGAAGTGACGGAGAAGGATTGCCAGGCTGCGTTGGACAA
GACCTTGAAAAAAAGTGCTGCGCTGATCAAGAATTTGTCGGATAAATTGG
TAGAACATCAAGACCAAGCCTGTGAGAGTTACGTAAAACTCCAAGCGCAA
CAGTATGCAATAAAGCGGATCCCAGAGGGTGCGAATCGGTTGCCTGATGG
AGAGTGGTGGTCCATTGAGGACGAAACGGATGAGTATGGGGAAGGATACC
GGGATTTGGAGAGCGGGGAAGGAGGGGTGGTGCTCTCGAAGGTGACGATG
GCGCAAGACGAAGCCTACGCAAAAAAGTTCCGTGACCACCATTCGGGAAT
GGTGGGGCTTTTGAATGACATTGAGGCAGCTTGCTTGGACTTAACGGAGG
AGGAGATGGAAGAACTGGCGGACGTGGGGTTGTTCTGCGCGAGGATTGCA
GCTGAATACGCTCAGGGGTTCGCCCGCCGGTCGTTGGCGATACTGGAGAA
GGATTATGATTGGGAGACGGCTGAGGAGAAGAGACGAGAAAGGGAGGAGC
ATGTAACAGTGGAAGAGGCTACGGAGGAGGAGATCGCAGAGCTATATCGG
AGCCGAATGGAGGAGCCACTGCCGCCTTTCAAGACCAACACCGTGAAAAG
CGGCAGCAAGAGGAGCAAAACCACTACCACCTCCACACACGTCAAAGAGA
CAAAGAATTCCTTTTTCGACGATCTCTGCGATCCTTACGCCCTCGCCCCT
CCACCCTCCTCAGGTCGCTGTCGCCGTGGTCGTGGCGCACCTTCTCGCCT
CCTCTGGCAACCGGTGGGGCCCTCCCTCCTCCAAGCCCTCCTTTCGACCC
CTCAGCAGTTCCAGTCACACCCGTTTAAAACGACGGGGTTGTATGCCGCT
CTCTTGCCAGTGAGTGGAATTATAGTGTTCTGTCTGCCTGGTGTATTAAT
CACAGATGCTGTGCTGCAAGCTATGTACAAGAAGGTCGGACATGGGGTAG
AGGTGTGGATACACGATGGCAAGGAAATTTGTCGGTTGAGCTGGATGGTT
TCACGTTTATCCTTGCGGCAGACGTATCGCCTTGCGAATAAGCAGTTGAG
GAAGACGGGCGCAGATCCGATGGCTGCTTTGAATTGGATAGGGGAAATGG
CATGTGAAGCCGTGGTGCACCCGCTTGTAACTGCTGGGGTAGTCTGGGAG
AGGGCCAAGCGGGCGGTGGTGACGGCGGGGAAGATTGTAGAGTGGGCGCA
GAAGCAGGTGATGGAGAAGTAG

Synonyms

Publications