jgi.p|Nanoce1779_2|563136, mRNA_158 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|563136
Unique NamemRNA_158
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length429
Alignment locationscaffold_3:405208..405636 +

Link to JBrowse

Properties
Property NameValue
TranscriptId563222
TrackFilteredModels2
ProteinId563136
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:405208..405636 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563136gene_158Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|563136mRNA_158-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_158CDS_158Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_158 ID=mRNA_158|Name=jgi.p|Nanoce1779_2|563136|organism=Nannochloropsis oceanica|type=mRNA|length=429bp
ATGCTGGACGCAACTGAATTGAACCCAGACCCACATGTAAGGAGAGGGTT
ATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAGGCCTGATGTGAGGG
ATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTGTTAGCAAGCATGAA
AAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCGAATGCTAGGGGACG
GCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGGAGGGAAGGAGGGAG
GGAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGTGCGGTGCTTGTG
GATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAGGAGTTGGATAGGGA
GAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTGGCAGGATGAGGAGA
AGGCAAAGCGCAGAGGATCAGGATGGTGA
back to top

protein sequence of jgi.p|Nanoce1779_2|563136

>mRNA_158-protein ID=mRNA_158-protein|Name=jgi.p|Nanoce1779_2|563136|organism=Nannochloropsis oceanica|type=polypeptide|length=143bp
MLDATELNPDPHVRRGLYDRLKSWLLRSRPDVRDVNALHGAVSTVVSKHE
KLENLKNELKEANARGRQRATTPRREKGGGKEGGKERGREGGREGGAVLV
DGVGEEEIKWKKELDRERMAQEEDGGEGWQDEEKAKRRGSGW*
back to top

mRNA from alignment at scaffold_3:405208..405636+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_158 ID=mRNA_158|Name=jgi.p|Nanoce1779_2|563136|organism=Nannochloropsis oceanica|type=mRNA|length=429bp|location=Sequence derived from alignment at scaffold_3:405208..405636+ (Nannochloropsis oceanica)
ATGCTGGACGCAACTGAATTGAACCCAGACCCACATGTAAGGAGAGGGTT ATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAGGCCTGATGTGAGGG ATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTGTTAGCAAGCATGAA AAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCGAATGCTAGGGGACG GCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGGAGGGAAGGAGGGAG GGAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGTGCGGTGCTTGTG GATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAGGAGTTGGATAGGGA GAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTGGCAGGATGAGGAGA AGGCAAAGCGCAGAGGATCAGGATGGTGA
back to top

Coding sequence (CDS) from alignment at scaffold_3:405208..405636+

>mRNA_158 ID=mRNA_158|Name=jgi.p|Nanoce1779_2|563136|organism=Nannochloropsis oceanica|type=CDS|length=429bp|location=Sequence derived from alignment at scaffold_3:405208..405636+ (Nannochloropsis oceanica)
ATGCTGGACGCAACTGAATTGAACCCAGACCCACATGTAAGGAGAGGGTT
ATATGATAGATTAAAAAGCTGGTTGCTGAGATCAAGGCCTGATGTGAGGG
ATGTTAACGCCCTTCACGGCGCTGTCTCGACGGTTGTTAGCAAGCATGAA
AAATTGGAAAATTTGAAAAATGAGTTGAAGGAAGCGAATGCTAGGGGACG
GCAACGGGCGACGACGCCCAGGAGGGAGAAGGGGGGAGGGAAGGAGGGAG
GGAAGGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGTGCGGTGCTTGTG
GATGGTGTGGGGGAGGAGGAGATAAAGTGGAAAAAGGAGTTGGATAGGGA
GAGAATGGCGCAGGAGGAGGATGGGGGAGAGGGGTGGCAGGATGAGGAGA
AGGCAAAGCGCAGAGGATCAGGATGGTGA
back to top
Synonyms
Publications