jgi.p|Nanoce1779_2|11898, mRNA_1579 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|11898
Unique Name	mRNA_1579
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1959
Alignment location	scaffold_1:992923..994881 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	11984
Track	FilteredModels2
ProteinId	11898

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:992923..994881 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|11898	gene_1579	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|11898	mRNA_1579-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1579	CDS_1579	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:992923..994881+
coding sequence from alignment at scaffold_1:992923..994881+

mRNA sequence

>mRNA_1579 ID=mRNA_1579|Name=jgi.p|Nanoce1779_2|11898|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp
CACGTAAAGTGGGGGTGGGGATAAAGATACACGTGGTGCATAAGAATCCA
AGCATGGCTGCTTGTACTAATCGCGCAGAATCCACTTAACTTTCTGGAAA
GTCTTTCAATTTCATCATTAGCCCTTTTTCATTTCCCATCCTCGACGTTT
TTACCCACATCAGCGAAAGCACAACCGCGCCCCTGGCCGCTGAAGAATTT
GACTGCGAGGACGGAGAAGAGGTGCCTGTCACCCATAGCTCCGAGACCCC
CGTCGTCCTCCCCGCAGCCTACCACGCCACTCATCACTCCAACAACATGG
AAATCAACGGCGCGACCCCCTTCCACCCACCCCGTCGTATCTCGAGCAAC
AGCGAGGCTGACGACGAGGAGACCTTCAGGCAAGCAACAACAGCCGCCGA
AGTTGAGGCAAATGGCGGGGAGGAAGAAGCAGCTTACCAGCGTCAGCAAG
CGGCGGCTGCAGCGGCGAACGACAACAACAACTACTACGACGACGACAGC
CGTAGGACGTCCCCTCCTCTCAAAGGTTTTTTTGGTGCAGATGCCACTGA
GGAGGAAGACATCAACCTGAGTGCGGCTATTGCTGCTGCCCCTCTTCCCG
CAAACGACGCCACGTTTCGCCGTCGCCGTTTGACCTTTGCCATGCAAGGA
AATATTGCGCCTCACACCCCCCTGAGCCAGATCCAGCAGCGCATATTTCG
TTCTTTAGAAATCGGGGACGTGCCGAAGGTGCCACTTCCCTTTCGGGAAG
GTCAGGTGGGTACCTTTTCGTGTCACGGCATTGAACCGTCTTATCTTGAC
ACGCGGCCGTTCATCGCTAAGATCAACCAGGACCGAGGGGTGTGTGTTTA
CCCTTATGTGGGCCATGAGCGGATGGCATTGTTTTGTGTGTTTGACGGGC
ACGGGGAGCAAGGGGACAAGGTGTCAGAATTTTGTATGTATGAGTTGCCG
CGGACATTGGAAGCGCATCCTTCCCTCTTGGAAGGAGAGGGGGATGTAAC
GAGGGCGTTCAAGGAGACGTTTTTGGGGGTGGATGAGAAGTTGAGGAGGA
ATCCGAATATCGATCCTTTCTACAGTGGAACGACTGCCGTGGTGTGTTTG
GTGAAGGAGGGGAGATTGTGGGTGGCCAATGCGGGGGATTCTCGGTGCAC
TCTCGCCTCGATTGACCCGAAGGGAAGCGGGAGGCTCTTGGCGCAGGATT
TATCGATTGATCAAAACCCGGACTCGCCCATGGAGATGGCGAGGATCTTG
AGGAGTGGGGGCTATGTGAGCCCGCCGCCGGAGCCCGGGTTGTCGGCACG
GGTGTGGTTGGACGCGGATTTTACTCAGGTGGGTTTGGCGATGGCGCGAA
GCATTGGTGACCACGCGGTTAAGGGGGTGGGGGTTATTGCAGAGCCGGAG
GTGATGACGCACGAGTTGAGGGAGGGGGGGAGGGATCAATTTTTGCTTTT
GGCGAGTGATGGGGTGTGGGAGTTCATCAGCTCACAGGAGGCGGTTGATA
TTGTGGGGGGGGAGCTGGAGAGGGGGTTGGGGGTATCCGAGGCTTGTCAG
GTCCTGATTGAGCGGGCGGCGGCGAGGTGGAGGGATGTGGAGGGCGATTA
CAGAGACGATATCACGGCCTTGTTGATTATGTTGCCGCTTTTCAAGTAGG
GGGAGAGAGGAGGGGAAGGAAGGTGGGTATGAGGGAAAGGAAGGAAAGGT
GTAGATGAGGTGTGTGCATCATTGGTTTAATTTGGAATAGGAAGAAGAGA
GAGAGAGACGCGAGACGAGAGACGAGAGATCACATCGGTCCTGTTGTCAC
AGCTTTATTTCGAGGGGCATGGTTCGGGTAAGAGAGAAGGAGAAGGGTAG
AGATAGAGAGGCACCGTAGTTTGTGTGCATGCATGCTTTCGTGTTAGTGC
TTTTTCGCGTTTCGATGATTATATGGAGATGGAGAGAATGAGATTGGATC
CAATGATAG

protein sequence of jgi.p|Nanoce1779_2|11898

>mRNA_1579-protein ID=mRNA_1579-protein|Name=jgi.p|Nanoce1779_2|11898|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MEINGATPFHPPRRISSNSEADDEETFRQATTAAEVEANGGEEEAAYQRQ
QAAAAAANDNNNYYDDDSRRTSPPLKGFFGADATEEEDINLSAAIAAAPL
PANDATFRRRRLTFAMQGNIAPHTPLSQIQQRIFRSLEIGDVPKVPLPFR
EGQVGTFSCHGIEPSYLDTRPFIAKINQDRGVCVYPYVGHERMALFCVFD
GHGEQGDKVSEFCMYELPRTLEAHPSLLEGEGDVTRAFKETFLGVDEKLR
RNPNIDPFYSGTTAVVCLVKEGRLWVANAGDSRCTLASIDPKGSGRLLAQ
DLSIDQNPDSPMEMARILRSGGYVSPPPEPGLSARVWLDADFTQVGLAMA
RSIGDHAVKGVGVIAEPEVMTHELREGGRDQFLLLASDGVWEFISSQEAV
DIVGGELERGLGVSEACQVLIERAAARWRDVEGDYRDDITALLIMLPLFK
*

mRNA from alignment at scaffold_1:992923..994881+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1579 ID=mRNA_1579|Name=jgi.p|Nanoce1779_2|11898|organism=Nannochloropsis oceanica|type=mRNA|length=1959bp|location=Sequence derived from alignment at scaffold_1:992923..994881+ (Nannochloropsis oceanica)
CACGTAAAGTGGGGGTGGGGATAAAGATACACGTGGTGCATAAGAATCCA
AGCATGGCTGCTTGTACTAATCGCGCAGAATCCACTTAACTTTCTGGAAA
GTCTTTCAATTTCATCATTAGCCCTTTTTCATTTCCCATCCTCGACGTTT
TTACCCACATCAGCGAAAGCACAACCGCGCCCCTGGCCGCTGAAGAATTT
GACTGCGAGGACGGAGAAGAGGTGCCTGTCACCCATAGCTCCGAGACCCC
CGTCGTCCTCCCCGCAGCCTACCACGCCACTCATCACTCCAACAACATGG
AAATCAACGGCGCGACCCCCTTCCACCCACCCCGTCGTATCTCGAGCAAC
AGCGAGGCTGACGACGAGGAGACCTTCAGGCAAGCAACAACAGCCGCCGA
AGTTGAGGCAAATGGCGGGGAGGAAGAAGCAGCTTACCAGCGTCAGCAAG
CGGCGGCTGCAGCGGCGAACGACAACAACAACTACTACGACGACGACAGC
CGTAGGACGTCCCCTCCTCTCAAAGGTTTTTTTGGTGCAGATGCCACTGA
GGAGGAAGACATCAACCTGAGTGCGGCTATTGCTGCTGCCCCTCTTCCCG
CAAACGACGCCACGTTTCGCCGTCGCCGTTTGACCTTTGCCATGCAAGGA
AATATTGCGCCTCACACCCCCCTGAGCCAGATCCAGCAGCGCATATTTCG
TTCTTTAGAAATCGGGGACGTGCCGAAGGTGCCACTTCCCTTTCGGGAAG
GTCAGGTGGGTACCTTTTCGTGTCACGGCATTGAACCGTCTTATCTTGAC
ACGCGGCCGTTCATCGCTAAGATCAACCAGGACCGAGGGGTGTGTGTTTA
CCCTTATGTGGGCCATGAGCGGATGGCATTGTTTTGTGTGTTTGACGGGC
ACGGGGAGCAAGGGGACAAGGTGTCAGAATTTTGTATGTATGAGTTGCCG
CGGACATTGGAAGCGCATCCTTCCCTCTTGGAAGGAGAGGGGGATGTAAC
GAGGGCGTTCAAGGAGACGTTTTTGGGGGTGGATGAGAAGTTGAGGAGGA
ATCCGAATATCGATCCTTTCTACAGTGGAACGACTGCCGTGGTGTGTTTG
GTGAAGGAGGGGAGATTGTGGGTGGCCAATGCGGGGGATTCTCGGTGCAC
TCTCGCCTCGATTGACCCGAAGGGAAGCGGGAGGCTCTTGGCGCAGGATT
TATCGATTGATCAAAACCCGGACTCGCCCATGGAGATGGCGAGGATCTTG
AGGAGTGGGGGCTATGTGAGCCCGCCGCCGGAGCCCGGGTTGTCGGCACG
GGTGTGGTTGGACGCGGATTTTACTCAGGTGGGTTTGGCGATGGCGCGAA
GCATTGGTGACCACGCGGTTAAGGGGGTGGGGGTTATTGCAGAGCCGGAG
GTGATGACGCACGAGTTGAGGGAGGGGGGGAGGGATCAATTTTTGCTTTT
GGCGAGTGATGGGGTGTGGGAGTTCATCAGCTCACAGGAGGCGGTTGATA
TTGTGGGGGGGGAGCTGGAGAGGGGGTTGGGGGTATCCGAGGCTTGTCAG
GTCCTGATTGAGCGGGCGGCGGCGAGGTGGAGGGATGTGGAGGGCGATTA
CAGAGACGATATCACGGCCTTGTTGATTATGTTGCCGCTTTTCAAGTAGG
GGGAGAGAGGAGGGGAAGGAAGGTGGGTATGAGGGAAAGGAAGGAAAGGT
GTAGATGAGGTGTGTGCATCATTGGTTTAATTTGGAATAGGAAGAAGAGA
GAGAGAGACGCGAGACGAGAGACGAGAGATCACATCGGTCCTGTTGTCAC
AGCTTTATTTCGAGGGGCATGGTTCGGGTAAGAGAGAAGGAGAAGGGTAG
AGATAGAGAGGCACCGTAGTTTGTGTGCATGCATGCTTTCGTGTTAGTGC
TTTTTCGCGTTTCGATGATTATATGGAGATGGAGAGAATGAGATTGGATC
CAATGATAG

Coding sequence (CDS) from alignment at scaffold_1:992923..994881+

>mRNA_1579 ID=mRNA_1579|Name=jgi.p|Nanoce1779_2|11898|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_1:992923..994881+ (Nannochloropsis oceanica)
ATGGAAATCAACGGCGCGACCCCCTTCCACCCACCCCGTCGTATCTCGAG
CAACAGCGAGGCTGACGACGAGGAGACCTTCAGGCAAGCAACAACAGCCG
CCGAAGTTGAGGCAAATGGCGGGGAGGAAGAAGCAGCTTACCAGCGTCAG
CAAGCGGCGGCTGCAGCGGCGAACGACAACAACAACTACTACGACGACGA
CAGCCGTAGGACGTCCCCTCCTCTCAAAGGTTTTTTTGGTGCAGATGCCA
CTGAGGAGGAAGACATCAACCTGAGTGCGGCTATTGCTGCTGCCCCTCTT
CCCGCAAACGACGCCACGTTTCGCCGTCGCCGTTTGACCTTTGCCATGCA
AGGAAATATTGCGCCTCACACCCCCCTGAGCCAGATCCAGCAGCGCATAT
TTCGTTCTTTAGAAATCGGGGACGTGCCGAAGGTGCCACTTCCCTTTCGG
GAAGGTCAGGTGGGTACCTTTTCGTGTCACGGCATTGAACCGTCTTATCT
TGACACGCGGCCGTTCATCGCTAAGATCAACCAGGACCGAGGGGTGTGTG
TTTACCCTTATGTGGGCCATGAGCGGATGGCATTGTTTTGTGTGTTTGAC
GGGCACGGGGAGCAAGGGGACAAGGTGTCAGAATTTTGTATGTATGAGTT
GCCGCGGACATTGGAAGCGCATCCTTCCCTCTTGGAAGGAGAGGGGGATG
TAACGAGGGCGTTCAAGGAGACGTTTTTGGGGGTGGATGAGAAGTTGAGG
AGGAATCCGAATATCGATCCTTTCTACAGTGGAACGACTGCCGTGGTGTG
TTTGGTGAAGGAGGGGAGATTGTGGGTGGCCAATGCGGGGGATTCTCGGT
GCACTCTCGCCTCGATTGACCCGAAGGGAAGCGGGAGGCTCTTGGCGCAG
GATTTATCGATTGATCAAAACCCGGACTCGCCCATGGAGATGGCGAGGAT
CTTGAGGAGTGGGGGCTATGTGAGCCCGCCGCCGGAGCCCGGGTTGTCGG
CACGGGTGTGGTTGGACGCGGATTTTACTCAGGTGGGTTTGGCGATGGCG
CGAAGCATTGGTGACCACGCGGTTAAGGGGGTGGGGGTTATTGCAGAGCC
GGAGGTGATGACGCACGAGTTGAGGGAGGGGGGGAGGGATCAATTTTTGC
TTTTGGCGAGTGATGGGGTGTGGGAGTTCATCAGCTCACAGGAGGCGGTT
GATATTGTGGGGGGGGAGCTGGAGAGGGGGTTGGGGGTATCCGAGGCTTG
TCAGGTCCTGATTGAGCGGGCGGCGGCGAGGTGGAGGGATGTGGAGGGCG
ATTACAGAGACGATATCACGGCCTTGTTGATTATGTTGCCGCTTTTCAAG
TAG

Synonyms

Publications