jgi.p|Nanoce1779_2|522015, mRNA_1578 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|522015
Unique Name	mRNA_1578
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1617
Alignment location	scaffold_1:989252..991042 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	522101
Track	FilteredModels2
ProteinId	522015

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:989252..991042 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522015	gene_1578	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|522015	mRNA_1578-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1578	CDS_1578	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:989252..991042+
coding sequence from alignment at scaffold_1:989252..991042+

mRNA sequence

>mRNA_1578 ID=mRNA_1578|Name=jgi.p|Nanoce1779_2|522015|organism=Nannochloropsis oceanica|type=mRNA|length=1617bp
ATGCAGCAACAACAACAGCAACAAGAGCAACAAAACCTCCAGCCTCAAAA
GCAAGAACAACAATTTCAACTCTCCGGCGAGCTTACCCTACAACAGCCGC
CCCTCCAACCATCTGCTCTCGCAGAAGCCAAAGATGCAATCTTTAAGCCA
TCACCCCTCCTCTCTGGCGGTGGCGCCGATATCTCCTCTTCTTCTTCCTC
TACCACCACCACCACCACCTCTTCCAACTTCCCTCCGGCGCACTTTATCG
AAGGCGAAGCTATCACCACTCCTGCACAACCAATCCGTCCGACAAGTAGC
AGCACCAGCAGCACTAGCGGTGGAGGAGGGGGGGGTCCGGCACCAGGTAG
CTCCGGAGGAGGAACGGGAGGAGGAGGGTACATTTTCGCGCCACTTCCTG
ATGACTGCACGCCAGTACTTGCGTTCGTGAACAGCCGGTCAGGGGTAAGT
CAGGGACCCTACTTAATTCACCAATTACGACGATTACTGAACCCTGTTCA
AGTCGTTGACCTCGCGAACGAAGATCCGACCCGTGCCCTCCGCCAGTTTC
TGGAGCTTCCACGATTGAGGGTATTGGTTTGTGGGGGCGATGGGACAGCG
AAATGGATCATGAACTGCCTGGAGGACATAGGGCCGGAATGCTGGCCCCC
GATAGCGATCTTGCCGTTAGGGACGGGGAATGATCTGGCCAGGGTGTTGG
GGTGGGGTGGGGGCTACAACAACGAGAGCATTGTGGAATTTCTGGCGCAG
GTGCAGAGAGCGCATGTGGTGGTGGTGGACCGGTGGGAGTTGAAGCTTAT
GCCAGCGGGGAAGGCGGCGAGGACTAAGATGGTGACGTTCAATAATTATT
TTGGGATCGGTGTGGATGCGCAGGCTGCTTTGAAATTTCATCATTTGAGG
GAACAGAAGCCACAATTGTTTTTCTCGCGACTGCTGAATAAGCTGTGGTA
CGGTATGCTAGGTGCTCAGGATTTGTTTCGACGTACATGCGTCTCCTTGC
CGGAACGCGTCAAAATCGTTGCAGATGGGAACGAGTTAATCTTACCCCCT
CATGTCCAGGGAGTCATTTTTCTGAATATTGAATCCTATGGTGGCGGAGT
TAAGCTTTGGAATCAGATTGCGGCGTTTACAGCGTCGTCGATGCAGGATG
GATTGTTGGAGGTAGTGGCCGTTAACGGGGTGGTGCACCTTGGTCAGCTG
CAGGTGGGTTTGAGTAAAGCGGTGAAGCTCTGTCAGTGTCGTGAGGCTGT
TATTACCACCACCAGAGATCTGCCGATGCAGGTGGATGGGGAGCCTTGGC
CGCAGGCGAGGAGTATCATCAAGATTGGACGGAAGAAGGATCCGGCGTAC
TTGCTGAGGAGGACGATGGATAGCGGCGGGGCGGTGGTTGGGGAGGTAGT
CGAGCTGCTGGAGAGCGCGGTGAATGATGGGGTGATTACGTTGCCCCAAA
AAAAGAGCCTGTTGGCGGAGTTTTCGCGGAGGGTCGAGATGAAAAGGAAG
GTGTTCGAGCAGGAATTGAGTCAGAATGAGGGTGTCCCCTCGCTGACGAA
AGGCTTTGATGTTTCTCGATTGAGGTTGACTCCCGATTCGCATACGAATG
ACTGTTCTGTCATGTAA

protein sequence of jgi.p|Nanoce1779_2|522015

>mRNA_1578-protein ID=mRNA_1578-protein|Name=jgi.p|Nanoce1779_2|522015|organism=Nannochloropsis oceanica|type=polypeptide|length=539bp
MQQQQQQQEQQNLQPQKQEQQFQLSGELTLQQPPLQPSALAEAKDAIFKP
SPLLSGGGADISSSSSSTTTTTTSSNFPPAHFIEGEAITTPAQPIRPTSS
STSSTSGGGGGGPAPGSSGGGTGGGGYIFAPLPDDCTPVLAFVNSRSGVS
QGPYLIHQLRRLLNPVQVVDLANEDPTRALRQFLELPRLRVLVCGGDGTA
KWIMNCLEDIGPECWPPIAILPLGTGNDLARVLGWGGGYNNESIVEFLAQ
VQRAHVVVVDRWELKLMPAGKAARTKMVTFNNYFGIGVDAQAALKFHHLR
EQKPQLFFSRLLNKLWYGMLGAQDLFRRTCVSLPERVKIVADGNELILPP
HVQGVIFLNIESYGGGVKLWNQIAAFTASSMQDGLLEVVAVNGVVHLGQL
QVGLSKAVKLCQCREAVITTTRDLPMQVDGEPWPQARSIIKIGRKKDPAY
LLRRTMDSGGAVVGEVVELLESAVNDGVITLPQKKSLLAEFSRRVEMKRK
VFEQELSQNEGVPSLTKGFDVSRLRLTPDSHTNDCSVM*

mRNA from alignment at scaffold_1:989252..991042+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1578 ID=mRNA_1578|Name=jgi.p|Nanoce1779_2|522015|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp|location=Sequence derived from alignment at scaffold_1:989252..991042+ (Nannochloropsis oceanica)
ATGCAGCAACAACAACAGCAACAAGAGCAACAAAACCTCCAGCCTCAAAA
GCAAGAACAACAATTTCAACTCTCCGGCGAGCTTACCCTACAACAGCCGC
CCCTCCAACCATCTGCTCTCGCAGAAGCCAAAGATGCAATCTTTAAGCCA
TCACCCCTCCTCTCTGGCGGTGGCGCCGATATCTCCTCTTCTTCTTCCTC
TACCACCACCACCACCACCTCTTCCAACTTCCCTCCGGCGCACTTTATCG
AAGGCGAAGCTATCACCACTCCTGCACAACCAATCCGTCCGACAAGTAGC
AGCACCAGCAGCACTAGCGGTGGAGGAGGGGGGGGTCCGGCACCAGGTAG
CTCCGGAGGAGGAACGGGAGGAGGAGGGTACATTTTCGCGCCACTTCCTG
ATGACTGCACGCCAGTACTTGCGTTCGTGAACAGCCGGTCAGGGGTAAGT
CAGGGACCCTACTTAATTCACCAATTACGACGATTACTGAACCCTGTTCA
AGTCGTTGACCTCGCGAACGAAGATCCGACCCGTGCCCTCCGCCAGTTTC
TGGAGCTTCCACGATTGAGGGTATTGGTTTGTGGGGGCGATGGGACAGCG
AAATGGATCATGAACTGCCTGGAGGACATAGGGCCGGAATGCTGGCCCCC
GATAGCGATCTTGCCGTTAGGGACGGGGAATGATCTGGCCAGGGTGTTGG
GGTGGGGTGGGGGCTACAACAACGAGAGCATTGTGGAATTTCTGGCGCAG
GTGCAGAGAGCGCATGTGGTGGTGGTGGACCGGTGGGAGTTGAAGCTTAT
GCCAGCGGGGAAGGCGGCGAGGACTAAGATGGTGACGTTCAATAATTATT
TTGGGATCGGTGTGGATGCGCAGGCTGCTTTGAAATTTCATCATTTGAGG
GAACAGAAGCCACAATTGTTTTTCTCGCGACTGCTGAATAAGCTGTGGTA
CGGTATGCTAGGTGCTCAGGATTTGTTTCGACGTACATGCGTCTCCTTGC
CGGAACGCGTCAAAATCGTTGCAGATGGGAACGAGTTAATCTTACCCCCT
CATGTCCAGGGAGTCATTTTTCTGAATATTGAATCCTATGGTGGCGGAGT
TAAGCTTTGGAATGTCGATGGGGACGATGGGCAGGGTGGAGGTGGGGGCA
TCTCCGACGGCTCGTCCTCCTCCGCTCCCTCTTCAGACGATGGTGGAGGG
AGCGATGATGAGGGGAAGCGGCCAAGAAAGTGGAGAAGGAGGCGGGAGCA
GCAGCAACAACAGCAGCAACAGCAACAGCAGCATCAGCAGATTGCGGCGT
TTACAGCGTCGTCGATGCAGGATGGATTGTTGGAGGTAGTGGCCGTTAAC
GGGGTGGTGCACCTTGGTCAGCTGCAGGTGGGTTTGAGTAAAGCGGTGAA
GCTCTGTCAGTGTCGTGAGGCTGTTATTACCACCACCAGAGATCTGCCGA
TGCAGGTGGATGGGGAGCCTTGGCCGCAGGCGAGGAGTATCATCAAGATT
GGACGGAAGAAGGATCCGGCGTACTTGCTGAGGAGGACGATGGATAGCGG
CGGGGCGGTGGTTGGGGAGGTAGTCGAGCTGCTGGAGAGCGCGGTGAATG
ATGGGGTGATTACGTTGCCCCAAAAAAAGAGCCTGTTGGCGGAGTTTTCG
CGGAGGGTCGAGATGAAAAGGAAGGTGTTCGAGCAGGAATTGAGTCAGAA
TGAGGGTGTCCCCTCGCTGACGAAAGGCTTTGATGTTTCTCGATTGAGGT
TGACTCCCGATTCGCATACGAATGACTGTTCTGTCATGTAA

Coding sequence (CDS) from alignment at scaffold_1:989252..991042+

>mRNA_1578 ID=mRNA_1578|Name=jgi.p|Nanoce1779_2|522015|organism=Nannochloropsis oceanica|type=CDS|length=3234bp|location=Sequence derived from alignment at scaffold_1:989252..991042+ (Nannochloropsis oceanica)
ATGCAGCAACAACAACAGCAACAAGAGCAACAAAACCTCCAGCCTCAAAA
GCAAGAACAACAATTTCAACTCTCCGGCGAGCTTACCCTACAACAGCCGC
CCCTCCAACCATCTGCTCTCGCAGAAGCCAAAGATGCAATCTTTAAGCCA
TCACCCCTCCTCTCTGGCGGTGGCGCCGATATCTCCTCTTCTTCTTCCTC
TACCACCACCACCACCACCTCTTCCAACTTCCCTCCGGCGCACTTTATCG
AAGGCGAAGCTATCACCACTCCTGCACAACCAATCCGTCCGACAAGTAGC
AGCACCAGCAGCACTAGCGGTGGAGGAGGGGGGGGTCCGGCACCAGGTAG
CTCCGGAGGAGGAACGGGAGGAGGAGGGTACATTTTCGCGCCACTTCCTG
ATGACTGCACGCCAGTACTTGCGTTCGTGAACAGCCGGTCAGGGGTAAGT
CAGGGACCCTACTTAATTCACCAATTACGACGATTACTGAACCCTGTTCA
AGTCGTTGACCTCGCGAACGAAGATCCGACCCGTGCCCTCCGCCAGTTTC
TGGAGCTTCCACGATTGAGGGTATTGGTTTGTGGGGGCGATGGGACAGCG
AAATGGATCATGAACTGCCTGGAGGACATAGGGCCGGAATGCTGGCCCCC
GATAGCGATCTTGCCGTTAGGGACGGGGAATGATCTGGCCAGGGTGTTGG
GGTGGGGTGGGGGCTACAACAACGAGAGCATTGTGGAATTTCTGGCGCAG
GTGCAGAGAGCGCATGTGGTGGTGGTGGACCGGTGGGAGTTGAAGCTTAT
GCCAGCGGGGAAGGCGGCGAGGACTAAGATGGTGACGTTCAATAATTATT
TTGGGATCGGTGTGGATGCGCAGGCTGCTTTGAAATTTCATCATTTGAGG
GAACAGAAGCCACAATTGTTTTTCTCGCGACTGCTGAATAAGCTGTGGTA
CGGTATGCTAGGTGCTCAGGATTTGTTTCGACGTACATGCGTCTCCTTGC
CGGAACGCGTCAAAATCGTTGCAGATGGGAACGAGTTAATCTTACCCCCT
CATGTCCAGGGAGTCATTTTTCTGAATATTGAATCCTATGGTGGCGGAGT
TAAGCTTTGGAATCAGATTGCGGCGTTTACAGCGTCGTCGATGCAGGATG
GATTGTTGGAGGTAGTGGCCGTTAACGGGGTGGTGCACCTTGGTCAGCTG
CAGGTGGGTTTGAGTAAAGCGGTGAAGCTCTGTCAGTGTCGTGAGGCTGT
TATTACCACCACCAGAGATCTGCCGATGCAGGTGGATGGGGAGCCTTGGC
CGCAGGCGAGGAGTATCATCAAGATTGGACGGAAGAAGGATCCGGCGTAC
TTGCTGAGGAGGACGATGGATAGCGGCGGGGCGGTGGTTGGGGAGGTAGT
CGAGCTGCTGGAGAGCGCGGTGAATGATGGGGTGATTACGTTGCCCCAAA
AAAAGAGCCTGTTGGCGGAGTTTTCGCGGAGGGTCGAGATGAAAAGGAAG
GTGTTCGAGCAGGAATTGAGTCAGAATGAGGGTGTCCCCTCGCTGACGAA
AGGCTTTGATGTTTCTCGATTGAGGTTGACTCCCGATTCGCATACGAATG
ACTGTTCTGTCATGTAAATGCAGCAACAACAACAGCAACAAGAGCAACAA
AACCTCCAGCCTCAAAAGCAAGAACAACAATTTCAACTCTCCGGCGAGCT
TACCCTACAACAGCCGCCCCTCCAACCATCTGCTCTCGCAGAAGCCAAAG
ATGCAATCTTTAAGCCATCACCCCTCCTCTCTGGCGGTGGCGCCGATATC
TCCTCTTCTTCTTCCTCTACCACCACCACCACCACCTCTTCCAACTTCCC
TCCGGCGCACTTTATCGAAGGCGAAGCTATCACCACTCCTGCACAACCAA
TCCGTCCGACAAGTAGCAGCACCAGCAGCACTAGCGGTGGAGGAGGGGGG
GGTCCGGCACCAGGTAGCTCCGGAGGAGGAACGGGAGGAGGAGGGTACAT
TTTCGCGCCACTTCCTGATGACTGCACGCCAGTACTTGCGTTCGTGAACA
GCCGGTCAGGGGTAAGTCAGGGACCCTACTTAATTCACCAATTACGACGA
TTACTGAACCCTGTTCAAGTCGTTGACCTCGCGAACGAAGATCCGACCCG
TGCCCTCCGCCAGTTTCTGGAGCTTCCACGATTGAGGGTATTGGTTTGTG
GGGGCGATGGGACAGCGAAATGGATCATGAACTGCCTGGAGGACATAGGG
CCGGAATGCTGGCCCCCGATAGCGATCTTGCCGTTAGGGACGGGGAATGA
TCTGGCCAGGGTGTTGGGGTGGGGTGGGGGCTACAACAACGAGAGCATTG
TGGAATTTCTGGCGCAGGTGCAGAGAGCGCATGTGGTGGTGGTGGACCGG
TGGGAGTTGAAGCTTATGCCAGCGGGGAAGGCGGCGAGGACTAAGATGGT
GACGTTCAATAATTATTTTGGGATCGGTGTGGATGCGCAGGCTGCTTTGA
AATTTCATCATTTGAGGGAACAGAAGCCACAATTGTTTTTCTCGCGACTG
CTGAATAAGCTGTGGTACGGTATGCTAGGTGCTCAGGATTTGTTTCGACG
TACATGCGTCTCCTTGCCGGAACGCGTCAAAATCGTTGCAGATGGGAACG
AGTTAATCTTACCCCCTCATGTCCAGGGAGTCATTTTTCTGAATATTGAA
TCCTATGGTGGCGGAGTTAAGCTTTGGAATCAGATTGCGGCGTTTACAGC
GTCGTCGATGCAGGATGGATTGTTGGAGGTAGTGGCCGTTAACGGGGTGG
TGCACCTTGGTCAGCTGCAGGTGGGTTTGAGTAAAGCGGTGAAGCTCTGT
CAGTGTCGTGAGGCTGTTATTACCACCACCAGAGATCTGCCGATGCAGGT
GGATGGGGAGCCTTGGCCGCAGGCGAGGAGTATCATCAAGATTGGACGGA
AGAAGGATCCGGCGTACTTGCTGAGGAGGACGATGGATAGCGGCGGGGCG
GTGGTTGGGGAGGTAGTCGAGCTGCTGGAGAGCGCGGTGAATGATGGGGT
GATTACGTTGCCCCAAAAAAAGAGCCTGTTGGCGGAGTTTTCGCGGAGGG
TCGAGATGAAAAGGAAGGTGTTCGAGCAGGAATTGAGTCAGAATGAGGGT
GTCCCCTCGCTGACGAAAGGCTTTGATGTTTCTCGATTGAGGTTGACTCC
CGATTCGCATACGAATGACTGTTCTGTCATGTAA

Synonyms

Publications