jgi.p|Nanoce1779_2|572761, mRNA_1576 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|572761
Unique Name	mRNA_1576
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1367
Alignment location	scaffold_1:986238..987771 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	572847
Track	FilteredModels2
ProteinId	572761

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_1	supercontig	scaffold_1:986238..987771 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572761	gene_1576	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|572761	mRNA_1576-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_1576	CDS_1576	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_1:986238..987771+
coding sequence from alignment at scaffold_1:986238..987771+

mRNA sequence

>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Nanoce1779_2|572761|organism=Nannochloropsis oceanica|type=mRNA|length=1367bp
AATAGGAACATTGAGAGTCGAGCAAGCCATGACCCCGTCCTCGATCGCCT
GCAATATTCCAATTGCTTGCCATCTTCCTCGTCACCATCGTCGACTGGGA
CCGGCCTCCCTCCTCGCTTTCCTCGTCTGTTGCAGCACCACCATCGCCCC
CACCCTTGGTTTCTTGGTGAATCCACGCACAACTTTCCCCAGAATACACG
CACTTCCGAGCAGAGGACATCGCGGCGAAAGTAGCATCAGTCGTGGCAGG
AGGATGAGGCCGATGACCTTGGTGACAGCAGGCGAGCGATCCCCCTCATC
GACCTTCCCTGCCGTGCTCGGCGGCCTGAGCCTTCCCTTCCTCGCGTGCA
CAAGCCAGGCAGTTGTGGCCGCACCAGGAGCAGGTCGGATTGTGGGAAAA
GCCACGGATATCTCCCCCCCGACCCCTCCCTCCAACTCGCGCATCGAACG
AAGCATTACGCCCTGGTCGTCGTTTGAGTTTAGTCGATCCATTCCCAAGA
TCCGCATACAAGATGGCGACCTGATAAGCAATGACCGTGTGGTGGTACAC
GGCCGTCCCATCCAAAAAAAAGACGTGGCAATCATCGGTGGCTTTGTGGG
CGCGGCCATAGCACAATCCGAGCTGGCCAAGAGAAGAGAAAGGGAAGGAG
GGGCGGGAGGGTTGGATGGGGATGTGTTCCTGGTGACATACCAGGTCGCA
TTGTATGATAGGGACCAACACGGGTTGATGCAGGCGTTGCAACGGTTGGC
ACAGAGAGCGGAGACGACGACGAGCAGCGGGTTGGCGAGCCTGGCGTCGA
GTGTGTCTTTAGAATTGTTGAGGTCGTATGAGGGATGGGTGGCCGCGACG
GCGCAAAGTGGGAGATTCAAAGACATGGCAGCTGCAGAGAGGGCTTTTAA
TGAGGCGTCGGTGAAGGAGAGAAAGAAGTGGGGTTTTGAGAATAGCGTGG
AGGATCGCGCTGCAGCGGCTCTGGCGGCGCGCAAGCAGCAGGAAAGGGGA
GGGGCTGAGAGGGTGAAGGAGAACGAAATTGCTGCAGCGATGGCGGGAAA
GCAGTTGATTGTTTTGACGTTGATGGTAGCGTGTAGGCATATAGGTGGGA
AGAAGATCTTACCCAGGAAACAAGGCTCAGCCGAGGCGCTTGAAAATTCG
TTGGAGCGCTTTGCGGCGGCGCTGCTGGAGAAGAATGGGAAGAATGTGCT
AGCGGTTGACGTGAGTTGGACGCCTGATGGGGAGGGGGAGACATTGAGTC
GTAAGGATGTGATGACGAAGTGGCCCGAGCTGATTGATTTATGAGAGGGA
GGGAGGGAGGGAGGAATGGAGCGGTGGTGAAATGTAGATACGTGAATGAC
AACAGGGTGGGAATAGA

protein sequence of jgi.p|Nanoce1779_2|572761

>mRNA_1576-protein ID=mRNA_1576-protein|Name=jgi.p|Nanoce1779_2|572761|organism=Nannochloropsis oceanica|type=polypeptide|length=422bp
MTPSSIACNIPIACHLPRHHRRLGPASLLAFLVCCSTTIAPTLGFLVNPR
TTFPRIHALPSRGHRGESSISRGRRMRPMTLVTAGERSPSSTFPAVLGGL
SLPFLACTSQAVVAAPGAGRIVGKATDISPPTPPSNSRIERSITPWSSFE
FSRSIPKIRIQDGDLISNDRVVVHGRPIQKKDVAIIGGFVGAAIAQSELA
KRREREGGAGGLDGDVFLVTYQVALYDRDQHGLMQALQRLAQRAETTTSS
GLASLASSVSLELLRSYEGWVAATAQSGRFKDMAAAERAFNEASVKERKK
WGFENSVEDRAAAALAARKQQERGGAERVKENEIAAAMAGKQLIVLTLMV
ACRHIGGKKILPRKQGSAEALENSLERFAAALLEKNGKNVLAVDVSWTPD
GEGETLSRKDVMTKWPELIDL*

mRNA from alignment at scaffold_1:986238..987771+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Nanoce1779_2|572761|organism=Nannochloropsis oceanica|type=mRNA|length=1534bp|location=Sequence derived from alignment at scaffold_1:986238..987771+ (Nannochloropsis oceanica)
AATAGGAACATTGAGAGTCGAGCAAGCCATGACCCCGTCCTCGATCGCCT
GCAATATTCCAATTGCTTGCCATCTTCCTCGTCACCATCGTCGACTGGGA
CCGGCCTCCCTCCTCGCTTTCCTCGTCTGTTGCAGCACCACCATCGCCCC
CACCCTTGGTTTCTTGGTGAATCCACGCACAACTTTCCCCAGAATACACG
CACTTCCGAGCAGAGGACATCGCGGCGAAAGTAGCATCAGTCGTGGCAGG
AGGATGAGGCCGATGACCTTGGTGACAGCAGGCGAGCGATCCCCCTCATC
GACCTTCCCTGCCGTGCTCGGCGGCCTGAGCCTTCCCTTCCTCGCGTGCA
CAAGCCAGGCAGTTGTGGCCGCACCAGGAGCAGGTCGGATTGTGGGAAAA
GCCACGGATATCTCCCCCCCGACCCCTCCCTCCAACTCGCGCATCGAACG
AAGCATTACGCCCTGGTCGTCGTTTGAGTTTAGTCGATCCATTCCCAAGG
TACGCGCGTGAATAGTTGTTAGACCTCGATTTTGAGGGGCAGATATTCAG
TTGTTTTCCTCGTTGATGTATTTCTCTGCCTGCATGCCTTTCCGTCAACC
AACTCTTCTCTTTTCCCTCGGATATAAACTCACTCCCCCTCCACCTTCTC
CTCCTACGTCACCTAGATCCGCATACAAGATGGCGACCTGATAAGCAATG
ACCGTGTGGTGGTACACGGCCGTCCCATCCAAAAAAAAGACGTGGCAATC
ATCGGTGGCTTTGTGGGCGCGGCCATAGCACAATCCGAGCTGGCCAAGAG
AAGAGAAAGGGAAGGAGGGGCGGGAGGGTTGGATGGGGATGTGTTCCTGG
TGACATACCAGGTCGCATTGTATGATAGGGACCAACACGGGTTGATGCAG
GCGTTGCAACGGTTGGCACAGAGAGCGGAGACGACGACGAGCAGCGGGTT
GGCGAGCCTGGCGTCGAGTGTGTCTTTAGAATTGTTGAGGTCGTATGAGG
GATGGGTGGCCGCGACGGCGCAAAGTGGGAGATTCAAAGACATGGCAGCT
GCAGAGAGGGCTTTTAATGAGGCGTCGGTGAAGGAGAGAAAGAAGTGGGG
TTTTGAGAATAGCGTGGAGGATCGCGCTGCAGCGGCTCTGGCGGCGCGCA
AGCAGCAGGAAAGGGGAGGGGCTGAGAGGGTGAAGGAGAACGAAATTGCT
GCAGCGATGGCGGGAAAGCAGTTGATTGTTTTGACGTTGATGGTAGCGTG
TAGGCATATAGGTGGGAAGAAGATCTTACCCAGGAAACAAGGCTCAGCCG
AGGCGCTTGAAAATTCGTTGGAGCGCTTTGCGGCGGCGCTGCTGGAGAAG
AATGGGAAGAATGTGCTAGCGGTTGACGTGAGTTGGACGCCTGATGGGGA
GGGGGAGACATTGAGTCGTAAGGATGTGATGACGAAGTGGCCCGAGCTGA
TTGATTTATGAGAGGGAGGGAGGGAGGGAGGAATGGAGCGGTGGTGAAAT
GTAGATACGTGAATGACAACAGGGTGGGAATAGA

Coding sequence (CDS) from alignment at scaffold_1:986238..987771+

>mRNA_1576 ID=mRNA_1576|Name=jgi.p|Nanoce1779_2|572761|organism=Nannochloropsis oceanica|type=CDS|length=2532bp|location=Sequence derived from alignment at scaffold_1:986238..987771+ (Nannochloropsis oceanica)
ATGACCCCGTCCTCGATCGCCTGCAATATTCCAATTGCTTGCCATCTTCC
TCGTCACCATCGTCGACTGGGACCGGCCTCCCTCCTCGCTTTCCTCGTCT
GTTGCAGCACCACCATCGCCCCCACCCTTGGTTTCTTGGTGAATCCACGC
ACAACTTTCCCCAGAATACACGCACTTCCGAGCAGAGGACATCGCGGCGA
AAGTAGCATCAGTCGTGGCAGGAGGATGAGGCCGATGACCTTGGTGACAG
CAGGCGAGCGATCCCCCTCATCGACCTTCCCTGCCGTGCTCGGCGGCCTG
AGCCTTCCCTTCCTCGCGTGCACAAGCCAGGCAGTTGTGGCCGCACCAGG
AGCAGGTCGGATTGTGGGAAAAGCCACGGATATCTCCCCCCCGACCCCTC
CCTCCAACTCGCGCATCGAACGAAGCATTACGCCCTGGTCGTCGTTTGAG
TTTAGTCGATCCATTCCCAAGATCCGCATACAAGATGGCGACCTGATAAG
CAATGACCGTGTGGTGGTACACGGCCGTCCCATCCAAAAAAAAGACGTGG
CAATCATCGGTGGCTTTGTGGGCGCGGCCATAGCACAATCCGAGCTGGCC
AAGAGAAGAGAAAGGGAAGGAGGGGCGGGAGGGTTGGATGGGGATGTGTT
CCTGGTGACATACCAGGTCGCATTGTATGATAGGGACCAACACGGGTTGA
TGCAGGCGTTGCAACGGTTGGCACAGAGAGCGGAGACGACGACGAGCAGC
GGGTTGGCGAGCCTGGCGTCGAGTGTGTCTTTAGAATTGTTGAGGTCGTA
TGAGGGATGGGTGGCCGCGACGGCGCAAAGTGGGAGATTCAAAGACATGG
CAGCTGCAGAGAGGGCTTTTAATGAGGCGTCGGTGAAGGAGAGAAAGAAG
TGGGGTTTTGAGAATAGCGTGGAGGATCGCGCTGCAGCGGCTCTGGCGGC
GCGCAAGCAGCAGGAAAGGGGAGGGGCTGAGAGGGTGAAGGAGAACGAAA
TTGCTGCAGCGATGGCGGGAAAGCAGTTGATTGTTTTGACGTTGATGGTA
GCGTGTAGGCATATAGGTGGGAAGAAGATCTTACCCAGGAAACAAGGCTC
AGCCGAGGCGCTTGAAAATTCGTTGGAGCGCTTTGCGGCGGCGCTGCTGG
AGAAGAATGGGAAGAATGTGCTAGCGGTTGACGTGAGTTGGACGCCTGAT
GGGGAGGGGGAGACATTGAGTCGTAAGGATGTGATGACGAAGTGGCCCGA
GCTGATTGATTTATGAATGACCCCGTCCTCGATCGCCTGCAATATTCCAA
TTGCTTGCCATCTTCCTCGTCACCATCGTCGACTGGGACCGGCCTCCCTC
CTCGCTTTCCTCGTCTGTTGCAGCACCACCATCGCCCCCACCCTTGGTTT
CTTGGTGAATCCACGCACAACTTTCCCCAGAATACACGCACTTCCGAGCA
GAGGACATCGCGGCGAAAGTAGCATCAGTCGTGGCAGGAGGATGAGGCCG
ATGACCTTGGTGACAGCAGGCGAGCGATCCCCCTCATCGACCTTCCCTGC
CGTGCTCGGCGGCCTGAGCCTTCCCTTCCTCGCGTGCACAAGCCAGGCAG
TTGTGGCCGCACCAGGAGCAGGTCGGATTGTGGGAAAAGCCACGGATATC
TCCCCCCCGACCCCTCCCTCCAACTCGCGCATCGAACGAAGCATTACGCC
CTGGTCGTCGTTTGAGTTTAGTCGATCCATTCCCAAGATCCGCATACAAG
ATGGCGACCTGATAAGCAATGACCGTGTGGTGGTACACGGCCGTCCCATC
CAAAAAAAAGACGTGGCAATCATCGGTGGCTTTGTGGGCGCGGCCATAGC
ACAATCCGAGCTGGCCAAGAGAAGAGAAAGGGAAGGAGGGGCGGGAGGGT
TGGATGGGGATGTGTTCCTGGTGACATACCAGGTCGCATTGTATGATAGG
GACCAACACGGGTTGATGCAGGCGTTGCAACGGTTGGCACAGAGAGCGGA
GACGACGACGAGCAGCGGGTTGGCGAGCCTGGCGTCGAGTGTGTCTTTAG
AATTGTTGAGGTCGTATGAGGGATGGGTGGCCGCGACGGCGCAAAGTGGG
AGATTCAAAGACATGGCAGCTGCAGAGAGGGCTTTTAATGAGGCGTCGGT
GAAGGAGAGAAAGAAGTGGGGTTTTGAGAATAGCGTGGAGGATCGCGCTG
CAGCGGCTCTGGCGGCGCGCAAGCAGCAGGAAAGGGGAGGGGCTGAGAGG
GTGAAGGAGAACGAAATTGCTGCAGCGATGGCGGGAAAGCAGTTGATTGT
TTTGACGTTGATGGTAGCGTGTAGGCATATAGGTGGGAAGAAGATCTTAC
CCAGGAAACAAGGCTCAGCCGAGGCGCTTGAAAATTCGTTGGAGCGCTTT
GCGGCGGCGCTGCTGGAGAAGAATGGGAAGAATGTGCTAGCGGTTGACGT
GAGTTGGACGCCTGATGGGGAGGGGGAGACATTGAGTCGTAAGGATGTGA
TGACGAAGTGGCCCGAGCTGATTGATTTATGA

Synonyms

Publications