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Properties
| Property Name | Value |
|---|
| TranscriptId | 572841 |
| Track | FilteredModels2 |
| ProteinId | 572755 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_1 | supercontig | scaffold_1:983532..985675 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_1575 ID=mRNA_1575|Name=jgi.p|Nanoce1779_2|572755|organism=Nannochloropsis oceanica|type=mRNA|length=1791bp
ACAGGCCAGGGGGAACCCACACGAGACACTATCTCGTCAGAGCAAGACAT
CAACCCAGACACATATTCGCATAACTCAAAGGCCAGCGAACTGCTCCTGC
AACGCCGCAGTGCCATCCTTCAACAACCCCAAGCCAGCAAGCATGTCATG
GTTTTTGGACCCCGCCCCCCTCTACGAGACCAGCGAATATGTCACCCGTG
ATCCTGTCAACCCCGTCCGCTTTGTGCAAGTGTTCCAATCTATCCCGGCA
CTCGAACCTCTCTACACCGAGTGGGAAAAGAATTTTAACGTCAAGGAGTC
CTACCGCATTATTCGAGACAACTGCTGGGTCCCTGTCATTGCCGTCATCC
TATATCTATCCTTCCTAGTCGAAGGCAGGAACTATGTGGAGCGACGAAAG
AAAGCAGGCAAAGGACCGGTTAATCTCGGTCGATTCCCGGCAATTTGGAA
TGGGTTCTTGGCCATCTTCTCGATACTTGGGGCTTTGCGCGTGGTCCCTC
ATTTCCTGTTTTTGTTCACACATAAGGATTTTAAGGAGACGGTTTGTGAG
GCTCCTGATACGGCGGGGTATGGTGATGGGGCGGCAGGGATGTGGGTGAT
GCTGTTTACGGTCTCGAAGGTGTTTGAGTTGATGGATACGGTGATTCTGG
TGTTGAAGGGAAAGAACCCAATGTTCTTGCACTGGTACCACCACGTGACA
GTGCTCCTCTACACATGGTTCTCCTACTCGGCCCGCAACCCAGGCCTATA
CTTTGTCGCCATGAACTACACCGTGCACGCCGTCATGTACTCTTACTACT
TCCTGATGGAGATCAAGCTCTGGCCGAAGTGGCTCAGCCCCATTTTCATC
ACCCTCATGCAAATCTCCCAAATGCTCGTCGGGGTCGGTATCACGGCCGC
CGCCTACATCTTTCAACGCGACCCTTCCTGCGGTGTTGTGCGCGACCTGA
TCCCCTGGTGTGCCGCCATGTACGCCACCTACCTCTATTTCTTTGTCGAG
TTTTTCGTGGAGCGCTTCTTGGCAGCGTCGAGTACGAAGGCAGGGAAAGA
GGAAGGTAAGGGAGGGAAGAGTCAACTGGCGAAAAAGGATATTGGGACCG
CGGCCTTCTCGCTGGTGACTGCCAATGGAGCGTCGGTGATGGGGAATGGG
AAGAAGGTGGTGTGAAAGATGCATTTTGAAGGAAGAATAGGGAAGACTGG
AGCCTCGGGAGGGATGCGGTGGGAAGAGGGTGGAGTGGACACTTGCTTGT
CCAATTTGATTATTAAAAGTAGACGGTGGAGAAGAAAATGAAGGACGGAC
GAGGAAGAGAAAGGGGAGATAGGTGGGGGAAAAAACAACGACTATGACCG
GTCAGCCGAGACACCCGCATGCACGCGCTCGGACTCGGTTCGGTCCGGAC
ACCGCTCATCCTGTCCACTGCATGTGGGCTAGAAGTAGGAGGAGAATGGG
TAAAGAGGGACCCTTTTGATGAAACAGGAGACCCTTTTGATGAAACAGGA
AGTGCAAAGAAGACACCTTTTGTTGTATATGGAGGGAGGAGGGTGGGAGG
ACCAGAGATAGTGGATGTATTTCTAAAAAAAGATTTTAAATTTGGTTGGA
ATGGGTTGAACGAGGTGGAACGAGAAAGAGGAAGAGATTACGAATGACCA
TAAATGAGGGAAATCAGAAGACGGAAGGGGAGGAAGGGAACCAAAAAGGA
AAAAAATGTGTGAGTAGTAGTAACGTAGCATGTGTAGCACAAGATACACA
CAGGCGCGCGCAGCAGCAGAAGAGATAGGAGCGAAGGACAA back to topprotein sequence of jgi.p|Nanoce1779_2|572755 >mRNA_1575-protein ID=mRNA_1575-protein|Name=jgi.p|Nanoce1779_2|572755|organism=Nannochloropsis oceanica|type=polypeptide|length=341bp
MSWFLDPAPLYETSEYVTRDPVNPVRFVQVFQSIPALEPLYTEWEKNFNV
KESYRIIRDNCWVPVIAVILYLSFLVEGRNYVERRKKAGKGPVNLGRFPA
IWNGFLAIFSILGALRVVPHFLFLFTHKDFKETVCEAPDTAGYGDGAAGM
WVMLFTVSKVFELMDTVILVLKGKNPMFLHWYHHVTVLLYTWFSYSARNP
GLYFVAMNYTVHAVMYSYYFLMEIKLWPKWLSPIFITLMQISQMLVGVGI
TAAAYIFQRDPSCGVVRDLIPWCAAMYATYLYFFVEFFVERFLAASSTKA
GKEEGKGGKSQLAKKDIGTAAFSLVTANGASVMGNGKKVV* back to topmRNA from alignment at scaffold_1:983532..985675- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_1575 ID=mRNA_1575|Name=jgi.p|Nanoce1779_2|572755|organism=Nannochloropsis oceanica|type=mRNA|length=2144bp|location=Sequence derived from alignment at scaffold_1:983532..985675- (Nannochloropsis oceanica)
ACAGGCCAGGGGGAACCCACACGAGACACTATCTCGTCAGAGCAAGACAT
CAACCCAGACACATATTCGCATAACTCAAAGGCCAGCGAACTGCTCCTGC
AACGCCGCAGTGCCATCCTTCAACAACCCCAAGCCAGCAAGCATGTCATG
GTTTTTGGACCCCGCCCCCCTCTACGAGACCAGCGAATATGTCACCCGTG
ATCCTGTCAACCCCGTCCGCTTTGTGCAAGTGTTCCAATCTATCCCGGCA
CTCGAACCTCTCTACACCGAGTGGGAAAAGAATTTTAACGTCAAGGAGTC
CTACCGCATTATTCGAGACAACTGCTGGGTCCCTGTCATTGCCGTCATCC
TATATCTATCCTTCCTAGTCGAAGGCAGGAACTATGTGGAGCGACGAAAG
AAAGCAGGCAAAGGACCGGTTAATCTCGGTCGATTCCCGGCAATTTGGAA
TGGGTTCTTGGCCATCTTCTCGATACTTGGGGCTTTGCGCGTGGTCCCTC
ATTTCCTGTTTTTGTTCACACATAAGGATTTTAAGGAGACGGTTTGTGAG
GCTCCTGATACGGCGGGGTATGGTGATGGGGCGGCAGGGATGTGGGTGAT
GCTGTTTACGGTCTCGAAGGTGTTTGAGTTGATGGATACGGTGATTCTGG
TGTTGAAGGGAAAGAACCCAATGTTCTTGCACTGGTACGTTGGCGCGGAG
TGGCGGACGGAAGAAGGGAAACTGACGATGGACAAAGCGAAAGGTCTCTG
TAGCGACATCAAATCCATCTTCCTGTCGCGCACGCATGAGGTGCACTCAC
GCGTGCTTCTGGCACCCCTCTCCCTCCTTTCCTCCCTTTCTTGTCTCTCT
TCACCACAGGTACCACCACGTGACAGTGCTCCTCTACACATGGTTCTCCT
ACTCGGCCCGCAACCCAGGCCTATACTTTGTCGCCATGAACTACACCGTG
CACGCCGTCATGTACTCTTACTACTTCCTGATGGAGATCAAGCTCTGGCC
GAAGTGGCTCAGGTACGTCCCCCTTTCTTCCCCCCCTCTCTCCCTCCCTC
CTTCTCTTCCTCCTTTCCTCTCTTCCATCTTCTGTACCGCGCACCCCGCC
ATCTCACTCCTTCTCTCCATCAGAGTCTTCCTTATTATCCACATTAACGC
CCTCCTCCCTCTTCCTCTCTTCCCTCCCCCACTCCCTCAGCCCCATTTTC
ATCACCCTCATGCAAATCTCCCAAATGCTCGTCGGGGTCGGTATCACGGC
CGCCGCCTACATCTTTCAACGCGACCCTTCCTGCGGTGTTGTGCGCGACC
TGATCCCCTGGTGTGCCGCCATGTACGCCACCTACCTCTATTTCTTTGTC
GAGTTTTTCGTGGAGCGCTTCTTGGCAGCGTCGAGTACGAAGGCAGGGAA
AGAGGAAGGTAAGGGAGGGAAGAGTCAACTGGCGAAAAAGGATATTGGGA
CCGCGGCCTTCTCGCTGGTGACTGCCAATGGAGCGTCGGTGATGGGGAAT
GGGAAGAAGGTGGTGTGAAAGATGCATTTTGAAGGAAGAATAGGGAAGAC
TGGAGCCTCGGGAGGGATGCGGTGGGAAGAGGGTGGAGTGGACACTTGCT
TGTCCAATTTGATTATTAAAAGTAGACGGTGGAGAAGAAAATGAAGGACG
GACGAGGAAGAGAAAGGGGAGATAGGTGGGGGAAAAAACAACGACTATGA
CCGGTCAGCCGAGACACCCGCATGCACGCGCTCGGACTCGGTTCGGTCCG
GACACCGCTCATCCTGTCCACTGCATGTGGGCTAGAAGTAGGAGGAGAAT
GGGTAAAGAGGGACCCTTTTGATGAAACAGGAGACCCTTTTGATGAAACA
GGAAGTGCAAAGAAGACACCTTTTGTTGTATATGGAGGGAGGAGGGTGGG
AGGACCAGAGATAGTGGATGTATTTCTAAAAAAAGATTTTAAATTTGGTT
GGAATGGGTTGAACGAGGTGGAACGAGAAAGAGGAAGAGATTACGAATGA
CCATAAATGAGGGAAATCAGAAGACGGAAGGGGAGGAAGGGAACCAAAAA
GGAAAAAAATGTGTGAGTAGTAGTAACGTAGCATGTGTAGCACAAGATAC
ACACAGGCGCGCGCAGCAGCAGAAGAGATAGGAGCGAAGGACAA back to topCoding sequence (CDS) from alignment at scaffold_1:983532..985675- >mRNA_1575 ID=mRNA_1575|Name=jgi.p|Nanoce1779_2|572755|organism=Nannochloropsis oceanica|type=CDS|length=3069bp|location=Sequence derived from alignment at scaffold_1:983532..985675- (Nannochloropsis oceanica)
CCCCATTTTCATCACCCTCATGCAAATCTCCCAAATGCTCGTCGGGGTCG
GTATCACGGCCGCCGCCTACATCTTTCAACGCGACCCTTCCTGCGGTGTT
GTGCGCGACCTGATCCCCTGGTGTGCCGCCATGTACGCCACCTACCTCTA
TTTCTTTGTCGAGTTTTTCGTGGAGCGCTTCTTGGCAGCGTCGAGTACGA
AGGCAGGGAAAGAGGAAGGTAAGGGAGGGAAGAGTCAACTGGCGAAAAAG
GATATTGGGACCGCGGCCTTCTCGCTGGTGACTGCCAATGGAGCGTCGGT
GATGGGGAATGGGAAGAAGGTGGTGTGAGTACCACCACGTGACAGTGCTC
CTCTACACATGGTTCTCCTACTCGGCCCGCAACCCAGGCCTATACTTTGT
CGCCATGAACTACACCGTGCACGCCGTCATGTACTCTTACTACTTCCTGA
TGGAGATCAAGCTCTGGCCGAAGTGGCTCAGATGTCATGGTTTTTGGACC
CCGCCCCCCTCTACGAGACCAGCGAATATGTCACCCGTGATCCTGTCAAC
CCCGTCCGCTTTGTGCAAGTGTTCCAATCTATCCCGGCACTCGAACCTCT
CTACACCGAGTGGGAAAAGAATTTTAACGTCAAGGAGTCCTACCGCATTA
TTCGAGACAACTGCTGGGTCCCTGTCATTGCCGTCATCCTATATCTATCC
TTCCTAGTCGAAGGCAGGAACTATGTGGAGCGACGAAAGAAAGCAGGCAA
AGGACCGGTTAATCTCGGTCGATTCCCGGCAATTTGGAATGGGTTCTTGG
CCATCTTCTCGATACTTGGGGCTTTGCGCGTGGTCCCTCATTTCCTGTTT
TTGTTCACACATAAGGATTTTAAGGAGACGGTTTGTGAGGCTCCTGATAC
GGCGGGGTATGGTGATGGGGCGGCAGGGATGTGGGTGATGCTGTTTACGG
TCTCGAAGGTGTTTGAGTTGATGGATACGGTGATTCTGGTGTTGAAGGGA
AAGAACCCAATGTTCTTGCACTGCCCCATTTTCATCACCCTCATGCAAAT
CTCCCAAATGCTCGTCGGGGTCGGTATCACGGCCGCCGCCTACATCTTTC
AACGCGACCCTTCCTGCGGTGTTGTGCGCGACCTGATCCCCTGGTGTGCC
GCCATGTACGCCACCTACCTCTATTTCTTTGTCGAGTTTTTCGTGGAGCG
CTTCTTGGCAGCGTCGAGTACGAAGGCAGGGAAAGAGGAAGGTAAGGGAG
GGAAGAGTCAACTGGCGAAAAAGGATATTGGGACCGCGGCCTTCTCGCTG
GTGACTGCCAATGGAGCGTCGGTGATGGGGAATGGGAAGAAGGTGGTGTG
AGTACCACCACGTGACAGTGCTCCTCTACACATGGTTCTCCTACTCGGCC
CGCAACCCAGGCCTATACTTTGTCGCCATGAACTACACCGTGCACGCCGT
CATGTACTCTTACTACTTCCTGATGGAGATCAAGCTCTGGCCGAAGTGGC
TCAGATGTCATGGTTTTTGGACCCCGCCCCCCTCTACGAGACCAGCGAAT
ATGTCACCCGTGATCCTGTCAACCCCGTCCGCTTTGTGCAAGTGTTCCAA
TCTATCCCGGCACTCGAACCTCTCTACACCGAGTGGGAAAAGAATTTTAA
CGTCAAGGAGTCCTACCGCATTATTCGAGACAACTGCTGGGTCCCTGTCA
TTGCCGTCATCCTATATCTATCCTTCCTAGTCGAAGGCAGGAACTATGTG
GAGCGACGAAAGAAAGCAGGCAAAGGACCGGTTAATCTCGGTCGATTCCC
GGCAATTTGGAATGGGTTCTTGGCCATCTTCTCGATACTTGGGGCTTTGC
GCGTGGTCCCTCATTTCCTGTTTTTGTTCACACATAAGGATTTTAAGGAG
ACGGTTTGTGAGGCTCCTGATACGGCGGGGTATGGTGATGGGGCGGCAGG
GATGTGGGTGATGCTGTTTACGGTCTCGAAGGTGTTTGAGTTGATGGATA
CGGTGATTCTGGTGTTGAAGGGAAAGAACCCAATGTTCTTGCACTGCCCC
ATTTTCATCACCCTCATGCAAATCTCCCAAATGCTCGTCGGGGTCGGTAT
CACGGCCGCCGCCTACATCTTTCAACGCGACCCTTCCTGCGGTGTTGTGC
GCGACCTGATCCCCTGGTGTGCCGCCATGTACGCCACCTACCTCTATTTC
TTTGTCGAGTTTTTCGTGGAGCGCTTCTTGGCAGCGTCGAGTACGAAGGC
AGGGAAAGAGGAAGGTAAGGGAGGGAAGAGTCAACTGGCGAAAAAGGATA
TTGGGACCGCGGCCTTCTCGCTGGTGACTGCCAATGGAGCGTCGGTGATG
GGGAATGGGAAGAAGGTGGTGTGAGTACCACCACGTGACAGTGCTCCTCT
ACACATGGTTCTCCTACTCGGCCCGCAACCCAGGCCTATACTTTGTCGCC
ATGAACTACACCGTGCACGCCGTCATGTACTCTTACTACTTCCTGATGGA
GATCAAGCTCTGGCCGAAGTGGCTCAGATGTCATGGTTTTTGGACCCCGC
CCCCCTCTACGAGACCAGCGAATATGTCACCCGTGATCCTGTCAACCCCG
TCCGCTTTGTGCAAGTGTTCCAATCTATCCCGGCACTCGAACCTCTCTAC
ACCGAGTGGGAAAAGAATTTTAACGTCAAGGAGTCCTACCGCATTATTCG
AGACAACTGCTGGGTCCCTGTCATTGCCGTCATCCTATATCTATCCTTCC
TAGTCGAAGGCAGGAACTATGTGGAGCGACGAAAGAAAGCAGGCAAAGGA
CCGGTTAATCTCGGTCGATTCCCGGCAATTTGGAATGGGTTCTTGGCCAT
CTTCTCGATACTTGGGGCTTTGCGCGTGGTCCCTCATTTCCTGTTTTTGT
TCACACATAAGGATTTTAAGGAGACGGTTTGTGAGGCTCCTGATACGGCG
GGGTATGGTGATGGGGCGGCAGGGATGTGGGTGATGCTGTTTACGGTCTC
GAAGGTGTTTGAGTTGATGGATACGGTGATTCTGGTGTTGAAGGGAAAGA
ACCCAATGTTCTTGCACTG back to top
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